EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000062651 (Gene tree)
Gene ID: 560141
Gene Symbol: zc3hc1
Alias: zgc:154099
Full Name: zinc finger%2C C3HC-type containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4675 bases
Position: chr4:15006217-15010891
Accession: ZDB-GENE-061013-94
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000085270	zf-C3HC	PF07967.13	3e-37	1	1
ENSDARP00000085270	Rsm1	PF08600.10	2.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000090837	-	2174	-	ENSDARP00000085270	492 (aa)	-	B0S6Y2
ENSDART00000146156	-	802	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000062651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000062651's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000062651	zc3hc1	95	45.996	ENSG00000091732	ZC3HC1	95	46.612	Homo_sapiens
ENSDARG00000062651	zc3hc1	100	61.310	ENSAPOG00000009078	zc3hc1	100	61.310	Acanthochromis_polyacanthus
ENSDARG00000062651	zc3hc1	97	46.108	ENSAMEG00000005425	ZC3HC1	97	46.707	Ailuropoda_melanoleuca
ENSDARG00000062651	zc3hc1	100	60.870	ENSACIG00000019513	zc3hc1	100	60.870	Amphilophus_citrinellus
ENSDARG00000062651	zc3hc1	100	61.310	ENSAOCG00000024310	zc3hc1	100	61.310	Amphiprion_ocellaris
ENSDARG00000062651	zc3hc1	99	61.323	ENSAPEG00000004907	zc3hc1	99	61.323	Amphiprion_percula
ENSDARG00000062651	zc3hc1	84	63.895	ENSATEG00000016898	zc3hc1	87	63.895	Anabas_testudineus
ENSDARG00000062651	zc3hc1	87	45.212	ENSAPLG00000003832	ZC3HC1	97	45.880	Anas_platyrhynchos
ENSDARG00000062651	zc3hc1	97	46.894	ENSACAG00000001638	ZC3HC1	96	46.894	Anolis_carolinensis
ENSDARG00000062651	zc3hc1	95	45.418	ENSANAG00000022213	ZC3HC1	95	46.029	Aotus_nancymaae
ENSDARG00000062651	zc3hc1	91	63.755	ENSACLG00000025033	zc3hc1	99	63.755	Astatotilapia_calliptera
ENSDARG00000062651	zc3hc1	94	59.052	ENSAMXG00000036792	zc3hc1	96	59.052	Astyanax_mexicanus
ENSDARG00000062651	zc3hc1	97	46.535	ENSBTAG00000011247	ZC3HC1	97	47.129	Bos_taurus
ENSDARG00000062651	zc3hc1	95	46.201	ENSCJAG00000010536	ZC3HC1	95	46.817	Callithrix_jacchus
ENSDARG00000062651	zc3hc1	95	47.551	ENSCAFG00000031850	-	95	47.551	Canis_familiaris
ENSDARG00000062651	zc3hc1	95	47.143	ENSCAFG00000028735	-	95	47.143	Canis_familiaris
ENSDARG00000062651	zc3hc1	95	47.262	ENSCAFG00000001499	-	94	47.262	Canis_familiaris
ENSDARG00000062651	zc3hc1	95	47.143	ENSCAFG00000029401	-	94	47.143	Canis_familiaris
ENSDARG00000062651	zc3hc1	95	46.341	ENSCAFG00020023333	-	95	46.341	Canis_lupus_dingo
ENSDARG00000062651	zc3hc1	95	47.347	ENSCAFG00020006829	-	95	47.347	Canis_lupus_dingo
ENSDARG00000062651	zc3hc1	97	42.600	ENSCHIG00000014103	ZC3HC1	97	43.200	Capra_hircus
ENSDARG00000062651	zc3hc1	97	45.000	ENSTSYG00000002843	ZC3HC1	97	45.600	Carlito_syrichta
ENSDARG00000062651	zc3hc1	86	38.117	ENSCAPG00000016300	ZC3HC1	92	40.179	Cavia_aperea
ENSDARG00000062651	zc3hc1	95	45.325	ENSCPOG00000014034	ZC3HC1	94	48.447	Cavia_porcellus
ENSDARG00000062651	zc3hc1	97	33.809	ENSCCAG00000020384	ZC3HC1	98	41.810	Cebus_capucinus
ENSDARG00000062651	zc3hc1	95	46.122	ENSCATG00000023130	ZC3HC1	95	46.735	Cercocebus_atys
ENSDARG00000062651	zc3hc1	95	34.845	ENSCLAG00000008260	ZC3HC1	93	35.052	Chinchilla_lanigera
ENSDARG00000062651	zc3hc1	73	43.817	ENSCSAG00000009881	ZC3HC1	96	44.624	Chlorocebus_sabaeus
ENSDARG00000062651	zc3hc1	86	48.984	ENSCHOG00000011846	ZC3HC1	95	48.984	Choloepus_hoffmanni
ENSDARG00000062651	zc3hc1	96	47.571	ENSCPBG00000017519	ZC3HC1	99	47.162	Chrysemys_picta_bellii
ENSDARG00000062651	zc3hc1	95	45.791	ENSCANG00000029091	ZC3HC1	95	46.407	Colobus_angolensis_palliatus
ENSDARG00000062651	zc3hc1	95	46.856	ENSCGRG00001018805	Zc3hc1	95	46.856	Cricetulus_griseus_chok1gshd
ENSDARG00000062651	zc3hc1	95	45.842	ENSCGRG00000017114	Zc3hc1	95	45.842	Cricetulus_griseus_crigri
ENSDARG00000062651	zc3hc1	100	58.071	ENSCSEG00000009284	zc3hc1	98	57.760	Cynoglossus_semilaevis
ENSDARG00000062651	zc3hc1	97	57.938	ENSCVAG00000011566	zc3hc1	97	57.938	Cyprinodon_variegatus
ENSDARG00000062651	zc3hc1	98	46.000	ENSDNOG00000045016	ZC3HC1	97	46.000	Dasypus_novemcinctus
ENSDARG00000062651	zc3hc1	97	44.534	ENSDORG00000008697	Zc3hc1	96	44.534	Dipodomys_ordii
ENSDARG00000062651	zc3hc1	95	46.266	ENSEASG00005008789	ZC3HC1	98	47.303	Equus_asinus_asinus
ENSDARG00000062651	zc3hc1	95	46.516	ENSECAG00000017886	ZC3HC1	95	47.131	Equus_caballus
ENSDARG00000062651	zc3hc1	77	46.405	ENSEEUG00000003123	ZC3HC1	76	47.059	Erinaceus_europaeus
ENSDARG00000062651	zc3hc1	99	61.811	ENSELUG00000023168	zc3hc1	100	62.402	Esox_lucius
ENSDARG00000062651	zc3hc1	95	46.804	ENSFCAG00000010429	ZC3HC1	95	47.423	Felis_catus
ENSDARG00000062651	zc3hc1	90	45.223	ENSFALG00000005006	ZC3HC1	98	45.223	Ficedula_albicollis
ENSDARG00000062651	zc3hc1	95	46.356	ENSFDAG00000019897	ZC3HC1	95	47.166	Fukomys_damarensis
ENSDARG00000062651	zc3hc1	97	56.619	ENSFHEG00000020149	zc3hc1	97	56.619	Fundulus_heteroclitus
ENSDARG00000062651	zc3hc1	99	55.422	ENSGMOG00000002914	zc3hc1	100	56.225	Gadus_morhua
ENSDARG00000062651	zc3hc1	98	44.181	ENSGALG00000008003	ZC3HC1	99	44.181	Gallus_gallus
ENSDARG00000062651	zc3hc1	99	57.460	ENSGAFG00000016095	zc3hc1	99	57.460	Gambusia_affinis
ENSDARG00000062651	zc3hc1	99	58.084	ENSGACG00000019706	zc3hc1	99	58.084	Gasterosteus_aculeatus
ENSDARG00000062651	zc3hc1	77	46.734	ENSGAGG00000016106	ZC3HC1	99	46.734	Gopherus_agassizii
ENSDARG00000062651	zc3hc1	95	46.201	ENSGGOG00000015504	ZC3HC1	95	46.817	Gorilla_gorilla
ENSDARG00000062651	zc3hc1	100	62.574	ENSHBUG00000008347	zc3hc1	100	62.574	Haplochromis_burtoni
ENSDARG00000062651	zc3hc1	95	46.531	ENSHGLG00000005085	ZC3HC1	95	47.347	Heterocephalus_glaber_female
ENSDARG00000062651	zc3hc1	95	46.626	ENSHGLG00100011395	ZC3HC1	95	47.444	Heterocephalus_glaber_male
ENSDARG00000062651	zc3hc1	100	57.374	ENSHCOG00000014309	zc3hc1	100	57.374	Hippocampus_comes
ENSDARG00000062651	zc3hc1	98	45.347	ENSSTOG00000023599	-	97	45.941	Ictidomys_tridecemlineatus
ENSDARG00000062651	zc3hc1	97	60.041	ENSKMAG00000015315	zc3hc1	91	60.041	Kryptolebias_marmoratus
ENSDARG00000062651	zc3hc1	99	58.696	ENSLBEG00000017325	zc3hc1	99	58.696	Labrus_bergylta
ENSDARG00000062651	zc3hc1	79	47.100	ENSLACG00000013032	ZC3HC1	99	47.126	Latimeria_chalumnae
ENSDARG00000062651	zc3hc1	99	60.437	ENSLOCG00000015963	zc3hc1	99	60.437	Lepisosteus_oculatus
ENSDARG00000062651	zc3hc1	97	45.618	ENSLAFG00000001292	ZC3HC1	95	46.545	Loxodonta_africana
ENSDARG00000062651	zc3hc1	95	45.791	ENSMFAG00000030176	ZC3HC1	95	46.407	Macaca_fascicularis
ENSDARG00000062651	zc3hc1	95	45.418	ENSMMUG00000006155	ZC3HC1	97	45.699	Macaca_mulatta
ENSDARG00000062651	zc3hc1	95	45.791	ENSMNEG00000011833	ZC3HC1	95	46.407	Macaca_nemestrina
ENSDARG00000062651	zc3hc1	95	45.791	ENSMLEG00000027328	ZC3HC1	97	44.892	Mandrillus_leucophaeus
ENSDARG00000062651	zc3hc1	100	62.648	ENSMAMG00000010691	zc3hc1	100	62.648	Mastacembelus_armatus
ENSDARG00000062651	zc3hc1	100	62.574	ENSMZEG00005007142	zc3hc1	100	62.574	Maylandia_zebra
ENSDARG00000062651	zc3hc1	96	43.651	ENSMGAG00000002977	ZC3HC1	97	43.960	Meleagris_gallopavo
ENSDARG00000062651	zc3hc1	82	43.914	ENSMAUG00000017032	Zc3hc1	90	44.391	Mesocricetus_auratus
ENSDARG00000062651	zc3hc1	95	46.761	ENSMICG00000009167	ZC3HC1	95	47.143	Microcebus_murinus
ENSDARG00000062651	zc3hc1	95	48.665	ENSMOCG00000015239	Zc3hc1	94	50.613	Microtus_ochrogaster
ENSDARG00000062651	zc3hc1	88	60.137	ENSMMOG00000002204	zc3hc1	99	60.137	Mola_mola
ENSDARG00000062651	zc3hc1	96	36.647	ENSMODG00000014630	ZC3HC1	96	37.087	Monodelphis_domestica
ENSDARG00000062651	zc3hc1	98	60.931	ENSMALG00000014447	zc3hc1	99	60.990	Monopterus_albus
ENSDARG00000062651	zc3hc1	96	46.640	MGP_CAROLIEiJ_G0028183	Zc3hc1	95	48.615	Mus_caroli
ENSDARG00000062651	zc3hc1	96	47.166	ENSMUSG00000039130	Zc3hc1	96	47.166	Mus_musculus
ENSDARG00000062651	zc3hc1	95	43.238	MGP_PahariEiJ_G0021941	Zc3hc1	95	43.238	Mus_pahari
ENSDARG00000062651	zc3hc1	96	47.166	MGP_SPRETEiJ_G0029183	Zc3hc1	96	47.166	Mus_spretus
ENSDARG00000062651	zc3hc1	91	47.537	ENSMPUG00000005297	ZC3HC1	92	47.589	Mustela_putorius_furo
ENSDARG00000062651	zc3hc1	67	41.379	ENSMLUG00000029228	-	98	41.379	Myotis_lucifugus
ENSDARG00000062651	zc3hc1	95	46.122	ENSMLUG00000000063	-	95	46.122	Myotis_lucifugus
ENSDARG00000062651	zc3hc1	95	47.667	ENSNGAG00000019014	Zc3hc1	95	47.667	Nannospalax_galili
ENSDARG00000062651	zc3hc1	100	62.970	ENSNBRG00000004577	zc3hc1	100	62.970	Neolamprologus_brichardi
ENSDARG00000062651	zc3hc1	95	46.217	ENSNLEG00000012698	ZC3HC1	95	46.830	Nomascus_leucogenys
ENSDARG00000062651	zc3hc1	96	47.581	ENSMEUG00000011023	ZC3HC1	97	47.581	Notamacropus_eugenii
ENSDARG00000062651	zc3hc1	60	50.607	ENSOPRG00000007867	-	63	51.613	Ochotona_princeps
ENSDARG00000062651	zc3hc1	95	46.061	ENSODEG00000014604	ZC3HC1	94	47.706	Octodon_degus
ENSDARG00000062651	zc3hc1	100	62.376	ENSONIG00000011644	zc3hc1	100	62.376	Oreochromis_niloticus
ENSDARG00000062651	zc3hc1	88	42.275	ENSOANG00000011460	ZC3HC1	97	42.275	Ornithorhynchus_anatinus
ENSDARG00000062651	zc3hc1	99	46.139	ENSOCUG00000017137	ZC3HC1	99	46.718	Oryctolagus_cuniculus
ENSDARG00000062651	zc3hc1	98	58.980	ENSORLG00000014409	zc3hc1	97	59.229	Oryzias_latipes
ENSDARG00000062651	zc3hc1	98	59.388	ENSORLG00020015874	zc3hc1	97	59.635	Oryzias_latipes_hni
ENSDARG00000062651	zc3hc1	98	58.980	ENSORLG00015014641	zc3hc1	97	59.229	Oryzias_latipes_hsok
ENSDARG00000062651	zc3hc1	99	60.000	ENSOMEG00000000215	zc3hc1	99	60.120	Oryzias_melastigma
ENSDARG00000062651	zc3hc1	99	60.000	ENSOMEG00000020604	zc3hc1	99	60.120	Oryzias_melastigma
ENSDARG00000062651	zc3hc1	95	40.808	ENSOGAG00000026193	ZC3HC1	95	42.424	Otolemur_garnettii
ENSDARG00000062651	zc3hc1	95	47.262	ENSOARG00000004907	ZC3HC1	94	47.870	Ovis_aries
ENSDARG00000062651	zc3hc1	95	46.201	ENSPPAG00000043172	ZC3HC1	95	46.817	Pan_paniscus
ENSDARG00000062651	zc3hc1	97	45.968	ENSPPRG00000001004	ZC3HC1	95	47.216	Panthera_pardus
ENSDARG00000062651	zc3hc1	95	46.804	ENSPTIG00000007823	ZC3HC1	95	47.423	Panthera_tigris_altaica
ENSDARG00000062651	zc3hc1	95	45.996	ENSPTRG00000019685	ZC3HC1	95	46.612	Pan_troglodytes
ENSDARG00000062651	zc3hc1	95	44.672	ENSPANG00000014229	ZC3HC1	95	45.287	Papio_anubis
ENSDARG00000062651	zc3hc1	99	59.681	ENSPKIG00000007172	zc3hc1	99	59.681	Paramormyrops_kingsleyae
ENSDARG00000062651	zc3hc1	94	44.877	ENSPSIG00000016646	ZC3HC1	94	45.306	Pelodiscus_sinensis
ENSDARG00000062651	zc3hc1	100	54.241	ENSPMGG00000003548	zc3hc1	99	54.635	Periophthalmus_magnuspinnatus
ENSDARG00000062651	zc3hc1	95	45.935	ENSPEMG00000000514	Zc3hc1	95	47.059	Peromyscus_maniculatus_bairdii
ENSDARG00000062651	zc3hc1	95	45.082	ENSPCIG00000020619	ZC3HC1	99	46.717	Phascolarctos_cinereus
ENSDARG00000062651	zc3hc1	99	57.948	ENSPFOG00000003466	zc3hc1	99	57.948	Poecilia_formosa
ENSDARG00000062651	zc3hc1	99	57.863	ENSPLAG00000022211	zc3hc1	99	57.863	Poecilia_latipinna
ENSDARG00000062651	zc3hc1	99	57.863	ENSPMEG00000001458	zc3hc1	99	57.863	Poecilia_mexicana
ENSDARG00000062651	zc3hc1	99	57.258	ENSPREG00000004004	zc3hc1	99	57.258	Poecilia_reticulata
ENSDARG00000062651	zc3hc1	97	42.222	ENSPPYG00000017998	ZC3HC1	95	43.149	Pongo_abelii
ENSDARG00000062651	zc3hc1	86	47.619	ENSPCAG00000001182	ZC3HC1	93	48.299	Procavia_capensis
ENSDARG00000062651	zc3hc1	95	47.047	ENSPCOG00000017354	ZC3HC1	95	47.047	Propithecus_coquereli
ENSDARG00000062651	zc3hc1	95	43.595	ENSPVAG00000003195	ZC3HC1	95	44.008	Pteropus_vampyrus
ENSDARG00000062651	zc3hc1	100	62.574	ENSPNYG00000020692	zc3hc1	100	62.574	Pundamilia_nyererei
ENSDARG00000062651	zc3hc1	98	61.111	ENSPNAG00000020746	zc3hc1	100	61.111	Pygocentrus_nattereri
ENSDARG00000062651	zc3hc1	95	46.122	ENSRNOG00000010154	Zc3hc1	95	46.122	Rattus_norvegicus
ENSDARG00000062651	zc3hc1	86	47.717	ENSRBIG00000029409	ZC3HC1	94	48.402	Rhinopithecus_bieti
ENSDARG00000062651	zc3hc1	95	45.791	ENSRROG00000041831	ZC3HC1	95	46.407	Rhinopithecus_roxellana
ENSDARG00000062651	zc3hc1	81	52.174	ENSSBOG00000032787	ZC3HC1	94	52.174	Saimiri_boliviensis_boliviensis
ENSDARG00000062651	zc3hc1	86	49.438	ENSSHAG00000002529	ZC3HC1	93	49.438	Sarcophilus_harrisii
ENSDARG00000062651	zc3hc1	100	60.636	ENSSFOG00015003667	zc3hc1	96	60.636	Scleropages_formosus
ENSDARG00000062651	zc3hc1	100	60.040	ENSSMAG00000000647	zc3hc1	90	60.239	Scophthalmus_maximus
ENSDARG00000062651	zc3hc1	100	62.376	ENSSDUG00000004241	zc3hc1	98	62.376	Seriola_dumerili
ENSDARG00000062651	zc3hc1	100	62.376	ENSSLDG00000025056	zc3hc1	98	62.376	Seriola_lalandi_dorsalis
ENSDARG00000062651	zc3hc1	96	44.130	ENSSARG00000012013	ZC3HC1	96	44.130	Sorex_araneus
ENSDARG00000062651	zc3hc1	92	41.737	ENSSPUG00000000778	ZC3HC1	89	41.737	Sphenodon_punctatus
ENSDARG00000062651	zc3hc1	100	61.706	ENSSPAG00000020041	zc3hc1	100	61.706	Stegastes_partitus
ENSDARG00000062651	zc3hc1	97	45.582	ENSSSCG00000016565	ZC3HC1	99	46.734	Sus_scrofa
ENSDARG00000062651	zc3hc1	100	56.137	ENSTRUG00000020077	zc3hc1	100	56.137	Takifugu_rubripes
ENSDARG00000062651	zc3hc1	99	54.491	ENSTNIG00000007585	zc3hc1	99	55.180	Tetraodon_nigroviridis
ENSDARG00000062651	zc3hc1	95	39.673	ENSTBEG00000005216	ZC3HC1	95	39.673	Tupaia_belangeri
ENSDARG00000062651	zc3hc1	96	47.262	ENSTTRG00000008458	ZC3HC1	100	47.262	Tursiops_truncatus
ENSDARG00000062651	zc3hc1	97	47.000	ENSUAMG00000020249	ZC3HC1	97	47.600	Ursus_americanus
ENSDARG00000062651	zc3hc1	97	46.200	ENSUMAG00000009268	ZC3HC1	97	46.800	Ursus_maritimus
ENSDARG00000062651	zc3hc1	67	41.964	ENSVPAG00000010846	ZC3HC1	65	42.857	Vicugna_pacos
ENSDARG00000062651	zc3hc1	91	47.537	ENSVVUG00000012386	ZC3HC1	94	47.537	Vulpes_vulpes
ENSDARG00000062651	zc3hc1	90	44.492	ENSXETG00000033900	zc3hc1	94	44.492	Xenopus_tropicalis
ENSDARG00000062651	zc3hc1	99	56.513	ENSXCOG00000013570	zc3hc1	99	56.513	Xiphophorus_couchianus
ENSDARG00000062651	zc3hc1	92	57.296	ENSXMAG00000010979	zc3hc1	98	57.296	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0008150	biological_process	-	ND	Process
GO:0008270	zinc ion binding	-	IEA	Function