EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000062983 (Gene tree)
Gene ID: 567995
Gene Symbol: fbxo18
Alias: si:dkey-22l11.2
Full Name: F-box DNA helicase 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 16034 bases
Position: chr4:9851810-9867843
Accession: ZDB-GENE-041210-99
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000118792	UvrD-helicase	PF00580.21	1.2e-11	1	1
ENSDARP00000086063	UvrD-helicase	PF00580.21	1.3e-11	1	1
ENSDARP00000149539	UvrD-helicase	PF00580.21	1.3e-11	1	1
ENSDARP00000157505	UvrD-helicase	PF00580.21	1.3e-11	1	1
ENSDARP00000144816	UvrD-helicase	PF00580.21	1.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000133169	-	3377	-	ENSDARP00000118792	988 (aa)	-	F6NLJ4
ENSDART00000185204	-	5766	XM_009300168	ENSDARP00000149539	1010 (aa)	XP_009298443	A0A2R8Q619
ENSDART00000185905	-	5982	-	ENSDARP00000157505	1022 (aa)	-	A0A2R8QU85
ENSDART00000180753	-	5834	XM_017355080	ENSDARP00000144816	1023 (aa)	XP_017210569	A0A2R8RHK4
ENSDART00000091630	-	3002	-	ENSDARP00000086063	992 (aa)	-	E9QBZ9

Gene Model

Click here to download ENSDARG00000062983's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000062983's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000062983	fbxo18	99	46.154	ENSG00000134452	FBH1	99	45.956	Homo_sapiens
ENSDARG00000062983	fbxo18	100	48.603	ENSAPOG00000007042	fbxo18	100	48.324	Acanthochromis_polyacanthus
ENSDARG00000062983	fbxo18	99	46.635	ENSAMEG00000002043	FBH1	99	46.445	Ailuropoda_melanoleuca
ENSDARG00000062983	fbxo18	99	49.107	ENSACIG00000006171	fbxo18	99	49.053	Amphilophus_citrinellus
ENSDARG00000062983	fbxo18	100	48.077	ENSAOCG00000014826	fbxo18	100	48.932	Amphiprion_ocellaris
ENSDARG00000062983	fbxo18	100	47.898	ENSAPEG00000022846	fbxo18	100	48.656	Amphiprion_percula
ENSDARG00000062983	fbxo18	100	49.255	ENSATEG00000004547	fbxo18	100	49.534	Anabas_testudineus
ENSDARG00000062983	fbxo18	97	43.078	ENSAPLG00000009754	FBH1	99	42.690	Anas_platyrhynchos
ENSDARG00000062983	fbxo18	86	46.914	ENSACAG00000002729	FBH1	83	47.267	Anolis_carolinensis
ENSDARG00000062983	fbxo18	99	45.972	ENSANAG00000032436	FBH1	99	45.731	Aotus_nancymaae
ENSDARG00000062983	fbxo18	100	48.131	ENSACLG00000004266	fbxo18	99	50.473	Astatotilapia_calliptera
ENSDARG00000062983	fbxo18	89	64.974	ENSAMXG00000020772	fbxo18	99	64.398	Astyanax_mexicanus
ENSDARG00000062983	fbxo18	99	45.687	ENSBTAG00000004147	FBH1	84	50.456	Bos_taurus
ENSDARG00000062983	fbxo18	99	46.110	ENSCJAG00000020531	FBH1	88	50.459	Callithrix_jacchus
ENSDARG00000062983	fbxo18	85	50.810	ENSCAFG00000005218	FBH1	88	51.103	Canis_familiaris
ENSDARG00000062983	fbxo18	85	50.810	ENSCAFG00020005396	FBH1	88	51.103	Canis_lupus_dingo
ENSDARG00000062983	fbxo18	86	49.886	ENSCHIG00000016303	FBH1	84	50.171	Capra_hircus
ENSDARG00000062983	fbxo18	99	44.687	ENSCPOG00000010580	FBH1	83	48.848	Cavia_porcellus
ENSDARG00000062983	fbxo18	99	46.249	ENSCCAG00000023218	FBH1	99	45.774	Cebus_capucinus
ENSDARG00000062983	fbxo18	99	41.267	ENSCATG00000035430	FBH1	87	54.684	Cercocebus_atys
ENSDARG00000062983	fbxo18	99	46.000	ENSCLAG00000008089	FBH1	84	50.853	Chinchilla_lanigera
ENSDARG00000062983	fbxo18	95	47.962	ENSCSAG00000013644	FBH1	90	50.741	Chlorocebus_sabaeus
ENSDARG00000062983	fbxo18	69	52.405	ENSCHOG00000007603	FBH1	68	52.405	Choloepus_hoffmanni
ENSDARG00000062983	fbxo18	99	44.148	ENSCPBG00000019260	FBH1	99	44.148	Chrysemys_picta_bellii
ENSDARG00000062983	fbxo18	99	45.869	ENSCANG00000023461	FBH1	99	45.810	Colobus_angolensis_palliatus
ENSDARG00000062983	fbxo18	99	46.395	ENSCGRG00001018795	Fbh1	99	46.314	Cricetulus_griseus_chok1gshd
ENSDARG00000062983	fbxo18	99	46.395	ENSCGRG00000008471	Fbh1	99	46.314	Cricetulus_griseus_crigri
ENSDARG00000062983	fbxo18	85	46.145	ENSCSEG00000018212	fbxo18	92	45.557	Cynoglossus_semilaevis
ENSDARG00000062983	fbxo18	82	46.823	ENSCVAG00000006828	fbxo18	99	46.659	Cyprinodon_variegatus
ENSDARG00000062983	fbxo18	99	45.790	ENSETEG00000019856	FBH1	99	45.066	Echinops_telfairi
ENSDARG00000062983	fbxo18	99	46.584	ENSEASG00005019192	FBH1	99	46.008	Equus_asinus_asinus
ENSDARG00000062983	fbxo18	99	46.395	ENSECAG00000006839	FBH1	99	45.877	Equus_caballus
ENSDARG00000062983	fbxo18	77	49.235	ENSEEUG00000000461	FBH1	79	49.787	Erinaceus_europaeus
ENSDARG00000062983	fbxo18	100	57.748	ENSELUG00000006556	fbxo18	100	58.394	Esox_lucius
ENSDARG00000062983	fbxo18	99	46.402	ENSFCAG00000009004	FBH1	82	50.626	Felis_catus
ENSDARG00000062983	fbxo18	99	46.235	ENSFDAG00000009830	FBH1	99	46.044	Fukomys_damarensis
ENSDARG00000062983	fbxo18	99	47.830	ENSFHEG00000007533	fbxo18	99	48.399	Fundulus_heteroclitus
ENSDARG00000062983	fbxo18	93	45.103	ENSGMOG00000010594	-	93	44.337	Gadus_morhua
ENSDARG00000062983	fbxo18	97	44.272	ENSGALG00000008162	FBH1	99	44.106	Gallus_gallus
ENSDARG00000062983	fbxo18	100	47.119	ENSGAFG00000004166	fbxo18	99	47.921	Gambusia_affinis
ENSDARG00000062983	fbxo18	97	47.725	ENSGACG00000019171	fbxo18	98	48.062	Gasterosteus_aculeatus
ENSDARG00000062983	fbxo18	100	45.109	ENSGAGG00000021773	FBH1	99	44.962	Gopherus_agassizii
ENSDARG00000062983	fbxo18	99	46.161	ENSGGOG00000013326	FBXO18	88	50.575	Gorilla_gorilla
ENSDARG00000062983	fbxo18	100	48.358	ENSHBUG00000016673	fbxo18	99	48.563	Haplochromis_burtoni
ENSDARG00000062983	fbxo18	99	45.739	ENSHGLG00000015581	FBXO18	83	50.745	Heterocephalus_glaber_female
ENSDARG00000062983	fbxo18	99	45.739	ENSHGLG00100009896	FBXO18	83	50.745	Heterocephalus_glaber_male
ENSDARG00000062983	fbxo18	57	52.432	ENSHCOG00000010937	-	77	52.432	Hippocampus_comes
ENSDARG00000062983	fbxo18	90	66.017	ENSIPUG00000019144	fbxo18	97	66.052	Ictalurus_punctatus
ENSDARG00000062983	fbxo18	86	50.976	ENSSTOG00000006496	FBH1	83	51.091	Ictidomys_tridecemlineatus
ENSDARG00000062983	fbxo18	99	47.475	ENSKMAG00000021437	fbxo18	96	46.907	Kryptolebias_marmoratus
ENSDARG00000062983	fbxo18	100	47.974	ENSLBEG00000023717	fbxo18	100	46.961	Labrus_bergylta
ENSDARG00000062983	fbxo18	75	39.824	ENSLACG00000013504	FBH1	99	40.200	Latimeria_chalumnae
ENSDARG00000062983	fbxo18	100	54.724	ENSLOCG00000015655	fbxo18	100	54.528	Lepisosteus_oculatus
ENSDARG00000062983	fbxo18	99	46.591	ENSLAFG00000013105	FBH1	100	46.307	Loxodonta_africana
ENSDARG00000062983	fbxo18	100	46.234	ENSMMUG00000015143	FBH1	100	45.920	Macaca_mulatta
ENSDARG00000062983	fbxo18	99	46.256	ENSMNEG00000043475	FBH1	99	46.059	Macaca_nemestrina
ENSDARG00000062983	fbxo18	99	46.256	ENSMLEG00000035307	FBH1	99	45.913	Mandrillus_leucophaeus
ENSDARG00000062983	fbxo18	100	47.541	ENSMAMG00000000527	fbxo18	100	47.359	Mastacembelus_armatus
ENSDARG00000062983	fbxo18	100	48.222	ENSMZEG00005015202	fbxo18	99	48.426	Maylandia_zebra
ENSDARG00000062983	fbxo18	90	45.094	ENSMGAG00000003231	FBH1	100	45.233	Meleagris_gallopavo
ENSDARG00000062983	fbxo18	99	46.307	ENSMICG00000009646	FBH1	98	51.594	Microcebus_murinus
ENSDARG00000062983	fbxo18	97	48.875	ENSMMOG00000010268	fbxo18	98	48.668	Mola_mola
ENSDARG00000062983	fbxo18	86	48.578	ENSMODG00000018516	FBH1	89	49.017	Monodelphis_domestica
ENSDARG00000062983	fbxo18	100	48.751	ENSMALG00000010440	fbxo18	100	47.826	Monopterus_albus
ENSDARG00000062983	fbxo18	99	46.381	MGP_CAROLIEiJ_G0023178	Fbh1	99	46.154	Mus_caroli
ENSDARG00000062983	fbxo18	99	46.381	ENSMUSG00000058594	Fbh1	99	46.425	Mus_musculus
ENSDARG00000062983	fbxo18	99	46.571	MGP_PahariEiJ_G0019237	Fbh1	99	46.154	Mus_pahari
ENSDARG00000062983	fbxo18	99	46.381	MGP_SPRETEiJ_G0024095	Fbh1	99	46.154	Mus_spretus
ENSDARG00000062983	fbxo18	99	46.635	ENSMPUG00000016343	FBH1	99	46.490	Mustela_putorius_furo
ENSDARG00000062983	fbxo18	99	44.204	ENSMLUG00000000133	FBH1	82	48.495	Myotis_lucifugus
ENSDARG00000062983	fbxo18	100	50.541	ENSNBRG00000018212	fbxo18	99	50.541	Neolamprologus_brichardi
ENSDARG00000062983	fbxo18	99	45.994	ENSNLEG00000011537	FBH1	99	45.817	Nomascus_leucogenys
ENSDARG00000062983	fbxo18	78	44.499	ENSMEUG00000000256	-	79	45.316	Notamacropus_eugenii
ENSDARG00000062983	fbxo18	99	44.392	ENSOPRG00000002898	FBH1	97	44.339	Ochotona_princeps
ENSDARG00000062983	fbxo18	99	45.611	ENSODEG00000004201	FBH1	83	51.273	Octodon_degus
ENSDARG00000062983	fbxo18	100	47.993	ENSONIG00000011830	fbxo18	100	53.082	Oreochromis_niloticus
ENSDARG00000062983	fbxo18	99	46.435	ENSOANG00000015459	FBH1	99	46.435	Ornithorhynchus_anatinus
ENSDARG00000062983	fbxo18	99	46.314	ENSOCUG00000006237	FBH1	100	46.132	Oryctolagus_cuniculus
ENSDARG00000062983	fbxo18	97	46.139	ENSORLG00000026493	fbxo18	98	46.045	Oryzias_latipes
ENSDARG00000062983	fbxo18	97	46.045	ENSORLG00020004678	fbxo18	98	45.857	Oryzias_latipes_hni
ENSDARG00000062983	fbxo18	97	45.814	ENSORLG00015001917	fbxo18	98	45.584	Oryzias_latipes_hsok
ENSDARG00000062983	fbxo18	87	49.381	ENSOMEG00000011975	fbxo18	81	49.381	Oryzias_melastigma
ENSDARG00000062983	fbxo18	99	45.706	ENSOGAG00000015682	FBH1	83	50.976	Otolemur_garnettii
ENSDARG00000062983	fbxo18	86	49.772	ENSOARG00000012605	FBH1	84	49.886	Ovis_aries
ENSDARG00000062983	fbxo18	99	46.066	ENSPPAG00000043946	FBH1	99	45.722	Pan_paniscus
ENSDARG00000062983	fbxo18	99	46.422	ENSPPRG00000009687	FBH1	81	50.739	Panthera_pardus
ENSDARG00000062983	fbxo18	99	46.371	ENSPTIG00000020396	FBH1	90	50.739	Panthera_tigris_altaica
ENSDARG00000062983	fbxo18	99	46.066	ENSPTRG00000002261	FBH1	99	45.722	Pan_troglodytes
ENSDARG00000062983	fbxo18	99	46.161	ENSPANG00000023427	FBH1	99	45.817	Papio_anubis
ENSDARG00000062983	fbxo18	100	56.065	ENSPKIG00000025529	fbxo18	100	56.065	Paramormyrops_kingsleyae
ENSDARG00000062983	fbxo18	99	44.906	ENSPSIG00000013802	FBH1	99	44.769	Pelodiscus_sinensis
ENSDARG00000062983	fbxo18	99	46.432	ENSPEMG00000023309	Fbh1	100	45.790	Peromyscus_maniculatus_bairdii
ENSDARG00000062983	fbxo18	99	44.434	ENSPCIG00000023460	FBH1	99	43.939	Phascolarctos_cinereus
ENSDARG00000062983	fbxo18	100	47.131	ENSPFOG00000005889	fbxo18	99	47.120	Poecilia_formosa
ENSDARG00000062983	fbxo18	100	47.601	ENSPLAG00000014934	fbxo18	99	47.309	Poecilia_latipinna
ENSDARG00000062983	fbxo18	100	47.561	ENSPMEG00000021117	fbxo18	99	47.552	Poecilia_mexicana
ENSDARG00000062983	fbxo18	67	54.108	ENSPREG00000017674	fbxo18	77	54.108	Poecilia_reticulata
ENSDARG00000062983	fbxo18	95	45.965	ENSPPYG00000002064	FBH1	99	45.706	Pongo_abelii
ENSDARG00000062983	fbxo18	99	43.318	ENSPCAG00000013584	FBH1	97	42.076	Procavia_capensis
ENSDARG00000062983	fbxo18	99	44.466	ENSPCOG00000011617	FBH1	79	49.085	Propithecus_coquereli
ENSDARG00000062983	fbxo18	99	46.190	ENSPVAG00000007082	FBH1	97	45.644	Pteropus_vampyrus
ENSDARG00000062983	fbxo18	91	54.494	ENSPNYG00000015327	fbxo18	95	54.749	Pundamilia_nyererei
ENSDARG00000062983	fbxo18	100	66.095	ENSPNAG00000008968	fbxo18	100	66.381	Pygocentrus_nattereri
ENSDARG00000062983	fbxo18	81	43.237	ENSPNAG00000001339	-	94	43.357	Pygocentrus_nattereri
ENSDARG00000062983	fbxo18	99	46.571	ENSRNOG00000018549	Fbh1	99	46.344	Rattus_norvegicus
ENSDARG00000062983	fbxo18	99	46.256	ENSRBIG00000038238	FBH1	100	45.825	Rhinopithecus_bieti
ENSDARG00000062983	fbxo18	99	46.256	ENSRROG00000029282	FBH1	97	45.913	Rhinopithecus_roxellana
ENSDARG00000062983	fbxo18	99	46.256	ENSSBOG00000026129	FBH1	99	45.913	Saimiri_boliviensis_boliviensis
ENSDARG00000062983	fbxo18	99	44.349	ENSSHAG00000009789	FBH1	99	43.828	Sarcophilus_harrisii
ENSDARG00000062983	fbxo18	100	56.772	ENSSFOG00015023855	fbxo18	98	55.818	Scleropages_formosus
ENSDARG00000062983	fbxo18	95	50.305	ENSSMAG00000012330	fbxo18	99	49.949	Scophthalmus_maximus
ENSDARG00000062983	fbxo18	99	48.735	ENSSDUG00000014911	fbxo18	99	48.199	Seriola_dumerili
ENSDARG00000062983	fbxo18	94	47.941	ENSSLDG00000014394	fbxo18	99	47.307	Seriola_lalandi_dorsalis
ENSDARG00000062983	fbxo18	99	41.659	ENSSPUG00000001370	FBH1	98	48.148	Sphenodon_punctatus
ENSDARG00000062983	fbxo18	97	48.876	ENSSPAG00000002282	fbxo18	98	48.912	Stegastes_partitus
ENSDARG00000062983	fbxo18	99	45.905	ENSSSCG00000030030	FBH1	83	51.096	Sus_scrofa
ENSDARG00000062983	fbxo18	83	47.791	ENSTNIG00000006893	fbxo18	99	48.402	Tetraodon_nigroviridis
ENSDARG00000062983	fbxo18	92	49.020	ENSTBEG00000003595	FBH1	72	51.791	Tupaia_belangeri
ENSDARG00000062983	fbxo18	99	44.583	ENSTTRG00000001338	FBH1	96	44.871	Tursiops_truncatus
ENSDARG00000062983	fbxo18	99	46.584	ENSUAMG00000007277	FBH1	99	45.956	Ursus_americanus
ENSDARG00000062983	fbxo18	85	50.810	ENSUMAG00000012189	FBH1	89	51.098	Ursus_maritimus
ENSDARG00000062983	fbxo18	99	46.388	ENSVVUG00000006823	FBH1	98	48.692	Vulpes_vulpes
ENSDARG00000062983	fbxo18	99	45.472	ENSXETG00000018125	fbh1	99	45.667	Xenopus_tropicalis
ENSDARG00000062983	fbxo18	100	47.838	ENSXMAG00000019200	fbxo18	99	47.256	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000724	double-strand break repair via homologous recombination	21873635.	IBA	Process
GO:0000725	recombinational repair	21873635.	IBA	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006281	DNA repair	21873635.	IBA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0031297	replication fork processing	21873635.	IBA	Process
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	21873635.	IBA	Function