EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000062987 (Gene tree)
Gene ID: 562076
Gene Symbol: tyw1
Alias: im:6898509|wu:fb74d01|zgc:153368
Full Name: tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 133441 bases
Position: chr15:16739160-16872600
Accession: ZDB-GENE-060929-688
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000117225	Wyosine_form	PF08608.12	1.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000142870	-	2633	XM_017350979	ENSDARP00000117225	754 (aa)	XP_017206468	F1QPL0
ENSDART00000152633	-	552	-	ENSDARP00000126892	49 (aa)	-	R4GEH9

Gene Model

Click here to download ENSDARG00000062987's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000062987's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000062987	tyw1	95	61.528	ENSG00000277149	TYW1B	98	61.528	Homo_sapiens
ENSDARG00000062987	tyw1	95	70.083	ENSG00000198874	TYW1	98	68.975	Homo_sapiens
ENSDARG00000062987	tyw1	99	74.468	ENSAPOG00000014391	tyw1	99	74.468	Acanthochromis_polyacanthus
ENSDARG00000062987	tyw1	95	73.204	ENSACIG00000007325	tyw1	99	71.607	Amphilophus_citrinellus
ENSDARG00000062987	tyw1	99	75.299	ENSAOCG00000016792	tyw1	99	75.432	Amphiprion_ocellaris
ENSDARG00000062987	tyw1	99	75.432	ENSAPEG00000015939	tyw1	99	76.113	Amphiprion_percula
ENSDARG00000062987	tyw1	86	74.886	ENSATEG00000006856	tyw1	91	73.556	Anabas_testudineus
ENSDARG00000062987	tyw1	95	69.114	ENSANAG00000037051	-	98	69.114	Aotus_nancymaae
ENSDARG00000062987	tyw1	99	74.232	ENSACLG00000018688	tyw1	99	73.082	Astatotilapia_calliptera
ENSDARG00000062987	tyw1	97	82.329	ENSAMXG00000004157	tyw1	100	82.329	Astyanax_mexicanus
ENSDARG00000062987	tyw1	96	69.315	ENSBTAG00000008446	TYW1	99	68.904	Bos_taurus
ENSDARG00000062987	tyw1	95	68.560	ENSCJAG00000004295	-	98	68.560	Callithrix_jacchus
ENSDARG00000062987	tyw1	96	67.531	ENSCAFG00000010867	-	99	67.258	Canis_familiaris
ENSDARG00000062987	tyw1	96	59.396	ENSCAFG00020005367	-	99	63.218	Canis_lupus_dingo
ENSDARG00000062987	tyw1	96	69.589	ENSCHIG00000019510	-	99	68.767	Capra_hircus
ENSDARG00000062987	tyw1	85	68.300	ENSTSYG00000008236	-	98	66.769	Carlito_syrichta
ENSDARG00000062987	tyw1	84	65.102	ENSCAPG00000013569	-	100	65.258	Cavia_aperea
ENSDARG00000062987	tyw1	94	66.345	ENSCPOG00000011182	-	98	66.255	Cavia_porcellus
ENSDARG00000062987	tyw1	95	69.114	ENSCCAG00000026643	-	98	69.252	Cebus_capucinus
ENSDARG00000062987	tyw1	95	69.668	ENSCATG00000043677	-	98	69.668	Cercocebus_atys
ENSDARG00000062987	tyw1	95	66.116	ENSCLAG00000006321	-	98	66.942	Chinchilla_lanigera
ENSDARG00000062987	tyw1	95	60.472	ENSCSAG00000018274	-	98	60.472	Chlorocebus_sabaeus
ENSDARG00000062987	tyw1	99	69.251	ENSCPBG00000014896	-	99	68.988	Chrysemys_picta_bellii
ENSDARG00000062987	tyw1	78	59.865	ENSCING00000004125	-	97	58.992	Ciona_intestinalis
ENSDARG00000062987	tyw1	79	52.443	ENSCSAVG00000005712	-	100	56.355	Ciona_savignyi
ENSDARG00000062987	tyw1	95	69.391	ENSCANG00000033209	-	98	69.391	Colobus_angolensis_palliatus
ENSDARG00000062987	tyw1	68	78.111	ENSCGRG00001003679	Tyw1	85	79.108	Cricetulus_griseus_chok1gshd
ENSDARG00000062987	tyw1	95	75.417	ENSCSEG00000005810	tyw1	94	76.422	Cynoglossus_semilaevis
ENSDARG00000062987	tyw1	90	71.594	ENSCVAG00000001054	tyw1	96	71.283	Cyprinodon_variegatus
ENSDARG00000062987	tyw1	99	68.609	ENSDNOG00000024165	-	99	70.041	Dasypus_novemcinctus
ENSDARG00000062987	tyw1	80	68.482	ENSDORG00000014772	Tyw1	88	68.482	Dipodomys_ordii
ENSDARG00000062987	tyw1	60	67.511	ENSEBUG00000004494	tyw1	96	67.511	Eptatretus_burgeri
ENSDARG00000062987	tyw1	96	68.767	ENSEASG00005008818	-	98	69.348	Equus_asinus_asinus
ENSDARG00000062987	tyw1	96	62.534	ENSECAG00000023164	-	98	84.195	Equus_caballus
ENSDARG00000062987	tyw1	58	80.412	ENSEEUG00000005950	-	53	79.592	Erinaceus_europaeus
ENSDARG00000062987	tyw1	99	71.904	ENSELUG00000008449	tyw1	98	70.659	Esox_lucius
ENSDARG00000062987	tyw1	96	68.126	ENSFCAG00000014262	-	99	67.305	Felis_catus
ENSDARG00000062987	tyw1	95	67.220	ENSFALG00000013810	-	99	66.620	Ficedula_albicollis
ENSDARG00000062987	tyw1	96	66.255	ENSFDAG00000013270	-	99	66.255	Fukomys_damarensis
ENSDARG00000062987	tyw1	89	70.425	ENSFHEG00000020824	tyw1	89	69.016	Fundulus_heteroclitus
ENSDARG00000062987	tyw1	97	67.385	ENSGALG00000001110	-	100	68.059	Gallus_gallus
ENSDARG00000062987	tyw1	95	72.541	ENSGACG00000012692	tyw1	99	73.315	Gasterosteus_aculeatus
ENSDARG00000062987	tyw1	95	71.016	ENSGAGG00000022393	-	99	70.742	Gopherus_agassizii
ENSDARG00000062987	tyw1	85	61.325	ENSGGOG00000001473	TYW1	98	61.325	Gorilla_gorilla
ENSDARG00000062987	tyw1	99	74.099	ENSHBUG00000002640	tyw1	99	72.948	Haplochromis_burtoni
ENSDARG00000062987	tyw1	85	68.232	ENSHGLG00000012093	-	100	67.919	Heterocephalus_glaber_female
ENSDARG00000062987	tyw1	96	67.260	ENSHGLG00100011743	TYW1	99	66.301	Heterocephalus_glaber_male
ENSDARG00000062987	tyw1	99	62.701	ENSHCOG00000019949	tyw1	99	62.433	Hippocampus_comes
ENSDARG00000062987	tyw1	99	79.039	ENSIPUG00000016330	tyw1	99	78.772	Ictalurus_punctatus
ENSDARG00000062987	tyw1	95	68.100	ENSSTOG00000004067	-	90	67.545	Ictidomys_tridecemlineatus
ENSDARG00000062987	tyw1	94	66.389	ENSJJAG00000022959	Tyw1	98	66.575	Jaculus_jaculus
ENSDARG00000062987	tyw1	99	73.502	ENSKMAG00000018599	tyw1	100	72.800	Kryptolebias_marmoratus
ENSDARG00000062987	tyw1	99	66.711	ENSLACG00000018917	tyw1	99	66.711	Latimeria_chalumnae
ENSDARG00000062987	tyw1	99	72.053	ENSLOCG00000004035	tyw1	99	72.053	Lepisosteus_oculatus
ENSDARG00000062987	tyw1	95	69.806	ENSMFAG00000035457	-	98	69.806	Macaca_fascicularis
ENSDARG00000062987	tyw1	95	69.806	ENSMMUG00000030374	-	98	69.806	Macaca_mulatta
ENSDARG00000062987	tyw1	95	69.806	ENSMNEG00000041992	-	98	69.806	Macaca_nemestrina
ENSDARG00000062987	tyw1	95	69.806	ENSMLEG00000039741	-	98	69.806	Mandrillus_leucophaeus
ENSDARG00000062987	tyw1	95	76.381	ENSMAMG00000016089	tyw1	98	73.467	Mastacembelus_armatus
ENSDARG00000062987	tyw1	87	77.795	ENSMZEG00005024386	tyw1	97	76.399	Maylandia_zebra
ENSDARG00000062987	tyw1	96	67.028	ENSMGAG00000002176	-	99	67.028	Meleagris_gallopavo
ENSDARG00000062987	tyw1	96	67.715	ENSMAUG00000002959	Tyw1	99	67.715	Mesocricetus_auratus
ENSDARG00000062987	tyw1	95	70.083	ENSMICG00000014374	-	99	70.083	Microcebus_murinus
ENSDARG00000062987	tyw1	96	66.349	ENSMOCG00000017720	Tyw1	99	64.960	Microtus_ochrogaster
ENSDARG00000062987	tyw1	97	68.076	ENSMMOG00000005064	tyw1	99	67.760	Mola_mola
ENSDARG00000062987	tyw1	96	66.263	ENSMODG00000025697	-	99	67.162	Monodelphis_domestica
ENSDARG00000062987	tyw1	95	76.796	ENSMALG00000010238	tyw1	96	76.072	Monopterus_albus
ENSDARG00000062987	tyw1	96	66.713	MGP_CAROLIEiJ_G0027801	Tyw1	99	66.437	Mus_caroli
ENSDARG00000062987	tyw1	96	67.213	ENSMUSG00000056310	Tyw1	98	67.867	Mus_musculus
ENSDARG00000062987	tyw1	96	68.094	MGP_PahariEiJ_G0024383	Tyw1	99	68.094	Mus_pahari
ENSDARG00000062987	tyw1	96	67.493	MGP_SPRETEiJ_G0028799	Tyw1	98	67.922	Mus_spretus
ENSDARG00000062987	tyw1	90	69.231	ENSMPUG00000016191	-	98	67.894	Mustela_putorius_furo
ENSDARG00000062987	tyw1	96	66.984	ENSMLUG00000013582	-	99	66.984	Myotis_lucifugus
ENSDARG00000062987	tyw1	96	66.207	ENSNGAG00000002742	Tyw1	99	66.207	Nannospalax_galili
ENSDARG00000062987	tyw1	87	75.189	ENSNBRG00000016996	tyw1	95	74.436	Neolamprologus_brichardi
ENSDARG00000062987	tyw1	95	69.391	ENSNLEG00000013210	-	97	69.391	Nomascus_leucogenys
ENSDARG00000062987	tyw1	90	53.880	ENSOPRG00000008734	-	90	53.655	Ochotona_princeps
ENSDARG00000062987	tyw1	95	59.889	ENSODEG00000014729	-	98	59.610	Octodon_degus
ENSDARG00000062987	tyw1	99	73.600	ENSONIG00000005872	tyw1	100	72.340	Oreochromis_niloticus
ENSDARG00000062987	tyw1	94	69.499	ENSOCUG00000003173	-	98	68.283	Oryctolagus_cuniculus
ENSDARG00000062987	tyw1	95	74.278	ENSORLG00000001393	tyw1	99	71.646	Oryzias_latipes
ENSDARG00000062987	tyw1	95	74.003	ENSORLG00020019361	tyw1	99	70.994	Oryzias_latipes_hni
ENSDARG00000062987	tyw1	95	73.793	ENSORLG00015008095	tyw1	95	72.790	Oryzias_latipes_hsok
ENSDARG00000062987	tyw1	90	72.247	ENSOGAG00000016555	-	99	67.984	Otolemur_garnettii
ENSDARG00000062987	tyw1	96	69.252	ENSOARG00000010673	-	99	68.435	Ovis_aries
ENSDARG00000062987	tyw1	96	68.457	ENSPPRG00000004945	-	99	67.631	Panthera_pardus
ENSDARG00000062987	tyw1	96	68.457	ENSPTIG00000019545	-	99	67.631	Panthera_tigris_altaica
ENSDARG00000062987	tyw1	95	64.690	ENSPTRG00000023076	TYW1B	97	64.690	Pan_troglodytes
ENSDARG00000062987	tyw1	95	69.529	ENSPANG00000019053	-	98	69.529	Papio_anubis
ENSDARG00000062987	tyw1	99	71.372	ENSPKIG00000006545	tyw1	100	70.972	Paramormyrops_kingsleyae
ENSDARG00000062987	tyw1	93	73.475	ENSPMGG00000004240	tyw1	100	73.191	Periophthalmus_magnuspinnatus
ENSDARG00000062987	tyw1	96	68.895	ENSPEMG00000008274	Tyw1	99	68.895	Peromyscus_maniculatus_bairdii
ENSDARG00000062987	tyw1	97	74.355	ENSPFOG00000015855	tyw1	100	72.863	Poecilia_formosa
ENSDARG00000062987	tyw1	99	71.825	ENSPLAG00000000838	tyw1	88	86.316	Poecilia_latipinna
ENSDARG00000062987	tyw1	99	72.149	ENSPMEG00000019437	tyw1	100	71.751	Poecilia_mexicana
ENSDARG00000062987	tyw1	96	70.467	ENSPREG00000018773	tyw1	98	69.589	Poecilia_reticulata
ENSDARG00000062987	tyw1	95	69.391	ENSPPYG00000017514	TYW1	98	68.560	Pongo_abelii
ENSDARG00000062987	tyw1	82	66.055	ENSPCOG00000015294	-	92	66.239	Propithecus_coquereli
ENSDARG00000062987	tyw1	99	74.232	ENSPNYG00000022381	tyw1	99	73.082	Pundamilia_nyererei
ENSDARG00000062987	tyw1	97	80.959	ENSPNAG00000009001	tyw1	100	80.685	Pygocentrus_nattereri
ENSDARG00000062987	tyw1	96	67.215	ENSRNOG00000024352	Tyw1	99	67.995	Rattus_norvegicus
ENSDARG00000062987	tyw1	95	69.529	ENSRBIG00000039619	-	98	69.529	Rhinopithecus_bieti
ENSDARG00000062987	tyw1	95	69.529	ENSRROG00000039780	-	98	69.529	Rhinopithecus_roxellana
ENSDARG00000062987	tyw1	86	41.053	YPL207W	-	51	53.095	Saccharomyces_cerevisiae
ENSDARG00000062987	tyw1	95	68.698	ENSSBOG00000025873	-	98	67.773	Saimiri_boliviensis_boliviensis
ENSDARG00000062987	tyw1	96	68.169	ENSSHAG00000010346	-	99	68.044	Sarcophilus_harrisii
ENSDARG00000062987	tyw1	99	73.733	ENSSFOG00015001054	tyw1	100	73.467	Scleropages_formosus
ENSDARG00000062987	tyw1	95	75.623	ENSSMAG00000020514	tyw1	100	71.638	Scophthalmus_maximus
ENSDARG00000062987	tyw1	99	75.629	ENSSDUG00000001552	tyw1	98	76.471	Seriola_dumerili
ENSDARG00000062987	tyw1	99	75.629	ENSSLDG00000003554	tyw1	99	74.437	Seriola_lalandi_dorsalis
ENSDARG00000062987	tyw1	96	68.852	ENSSPUG00000002715	-	99	68.579	Sphenodon_punctatus
ENSDARG00000062987	tyw1	96	68.219	ENSSSCG00000007733	-	99	68.219	Sus_scrofa
ENSDARG00000062987	tyw1	87	68.627	ENSTGUG00000003428	-	99	67.976	Taeniopygia_guttata
ENSDARG00000062987	tyw1	95	76.422	ENSTRUG00000016107	tyw1	93	75.104	Takifugu_rubripes
ENSDARG00000062987	tyw1	87	78.679	ENSTNIG00000018999	tyw1	100	77.327	Tetraodon_nigroviridis
ENSDARG00000062987	tyw1	95	68.283	ENSUMAG00000015343	-	98	67.452	Ursus_maritimus
ENSDARG00000062987	tyw1	96	67.305	ENSVVUG00000016457	-	99	67.031	Vulpes_vulpes
ENSDARG00000062987	tyw1	96	70.233	ENSXETG00000010094	tyw1	99	69.697	Xenopus_tropicalis
ENSDARG00000062987	tyw1	99	72.074	ENSXMAG00000013125	tyw1	98	73.748	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0008033	tRNA processing	-	IEA	Process
GO:0010181	FMN binding	-	IEA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016829	lyase activity	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0051536	iron-sulfur cluster binding	-	IEA	Function
GO:0051539	4 iron, 4 sulfur cluster binding	-	IEA	Function
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:0102521	tRNA-4-demethylwyosine synthase activity	-	IEA	Function