EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000063555 (Gene tree)
Gene ID: 100150156
Gene Symbol: si:ch211-166g5.4
Alias: -
Full Name: si:ch211-166g5.4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 12292 bases
Position: chr12:3766557-3778848
Accession: ZDB-GENE-121214-319
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000127012	zf-C2H2	PF00096.26	3.4e-28	1	5
ENSDARP00000127012	zf-C2H2	PF00096.26	3.4e-28	2	5
ENSDARP00000127012	zf-C2H2	PF00096.26	3.4e-28	3	5
ENSDARP00000127012	zf-C2H2	PF00096.26	3.4e-28	4	5
ENSDARP00000127012	zf-C2H2	PF00096.26	3.4e-28	5	5
ENSDARP00000087415	zf-C2H2	PF00096.26	3.9e-25	1	4
ENSDARP00000087415	zf-C2H2	PF00096.26	3.9e-25	2	4
ENSDARP00000087415	zf-C2H2	PF00096.26	3.9e-25	3	4
ENSDARP00000087415	zf-C2H2	PF00096.26	3.9e-25	4	4
ENSDARP00000087415	zf-met	PF12874.7	3.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000152128	-	2527	XM_001918941	ENSDARP00000127012	459 (aa)	XP_001918976	R4GEU9
ENSDART00000092983	-	792	-	ENSDARP00000087415	263 (aa)	-	F1RDH0

Gene Model

Click here to download ENSDARG00000063555's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000063555's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000063555	si:ch211-166g5.4	86	77.778	ENSG00000103495	MAZ	96	60.526	Homo_sapiens
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSANAG00000036195	-	71	48.958	Aotus_nancymaae
ENSDARG00000063555	si:ch211-166g5.4	76	65.517	ENSANAG00000037536	-	90	65.517	Aotus_nancymaae
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSBTAG00000052323	MAZ	88	49.379	Bos_taurus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCJAG00000007189	MAZ	70	48.586	Callithrix_jacchus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCAFG00000016964	MAZ	94	45.618	Canis_familiaris
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCAFG00020017751	MAZ	88	49.379	Canis_lupus_dingo
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCHIG00000020711	MAZ	50	78.289	Capra_hircus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCCAG00000037524	MAZ	52	78.289	Cebus_capucinus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCATG00000033033	MAZ	70	48.711	Cercocebus_atys
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCSAG00000006110	MAZ	95	58.519	Chlorocebus_sabaeus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCANG00000035162	MAZ	79	71.905	Colobus_angolensis_palliatus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSCGRG00001008879	Maz	52	78.289	Cricetulus_griseus_chok1gshd
ENSDARG00000063555	si:ch211-166g5.4	79	71.859	ENSCGRG00000014850	-	94	71.859	Cricetulus_griseus_crigri
ENSDARG00000063555	si:ch211-166g5.4	100	78.388	ENSCVAG00000015597	si:ch211-166g5.4	99	64.808	Cyprinodon_variegatus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSEASG00005013172	MAZ	51	78.289	Equus_asinus_asinus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSECAG00000024341	MAZ	88	49.693	Equus_caballus
ENSDARG00000063555	si:ch211-166g5.4	100	73.091	ENSELUG00000024246	MAZ	98	59.055	Esox_lucius
ENSDARG00000063555	si:ch211-166g5.4	100	81.618	ENSELUG00000022514	si:ch211-166g5.4	80	92.511	Esox_lucius
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSFCAG00000014146	MAZ	73	48.711	Felis_catus
ENSDARG00000063555	si:ch211-166g5.4	76	53.234	ENSFDAG00000010852	-	94	53.234	Fukomys_damarensis
ENSDARG00000063555	si:ch211-166g5.4	100	73.307	ENSFHEG00000000918	MAZ	97	72.908	Fundulus_heteroclitus
ENSDARG00000063555	si:ch211-166g5.4	100	81.319	ENSGAFG00000000293	si:ch211-166g5.4	99	68.303	Gambusia_affinis
ENSDARG00000063555	si:ch211-166g5.4	77	93.421	ENSGACG00000014840	maza	99	81.275	Gasterosteus_aculeatus
ENSDARG00000063555	si:ch211-166g5.4	91	76.875	ENSGAGG00000008124	MAZ	76	74.627	Gopherus_agassizii
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSHGLG00000018743	-	92	60.920	Heterocephalus_glaber_female
ENSDARG00000063555	si:ch211-166g5.4	80	60.952	ENSHGLG00000011024	-	79	60.952	Heterocephalus_glaber_female
ENSDARG00000063555	si:ch211-166g5.4	71	65.608	ENSHGLG00100017872	-	84	65.608	Heterocephalus_glaber_male
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSSTOG00000027842	MAZ	89	62.903	Ictidomys_tridecemlineatus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSJJAG00000020922	-	89	62.903	Jaculus_jaculus
ENSDARG00000063555	si:ch211-166g5.4	76	74.129	ENSLACG00000010161	MAZ	89	50.131	Latimeria_chalumnae
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSMFAG00000040127	MAZ	79	71.905	Macaca_fascicularis
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSMMUG00000019826	MAZ	60	78.289	Macaca_mulatta
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSMNEG00000037329	MAZ	79	71.905	Macaca_nemestrina
ENSDARG00000063555	si:ch211-166g5.4	63	78.289	ENSMLEG00000036147	-	75	77.778	Mandrillus_leucophaeus
ENSDARG00000063555	si:ch211-166g5.4	100	78.409	ENSMAMG00000018743	-	90	75.812	Mastacembelus_armatus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSMAUG00000011903	Maz	58	65.775	Mesocricetus_auratus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSMICG00000030392	MAZ	87	49.689	Microcebus_murinus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSMOCG00000003611	Maz	52	78.289	Microtus_ochrogaster
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSMUSG00000030678	Maz	52	78.289	Mus_musculus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	MGP_PahariEiJ_G0013693	Maz	53	78.289	Mus_pahari
ENSDARG00000063555	si:ch211-166g5.4	80	51.429	ENSMEUG00000009482	MAZ	81	36.878	Notamacropus_eugenii
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSODEG00000014451	MAZ	91	61.240	Octodon_degus
ENSDARG00000063555	si:ch211-166g5.4	63	77.778	ENSOANG00000004112	-	75	77.778	Ornithorhynchus_anatinus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSOARG00000005520	MAZ	87	51.952	Ovis_aries
ENSDARG00000063555	si:ch211-166g5.4	76	73.438	ENSPPAG00000041571	-	75	71.144	Pan_paniscus
ENSDARG00000063555	si:ch211-166g5.4	80	59.524	ENSPPRG00000011596	-	78	60.476	Panthera_pardus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSPPRG00000016750	-	53	78.289	Panthera_pardus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSPTRG00000007968	MAZ	88	54.244	Pan_troglodytes
ENSDARG00000063555	si:ch211-166g5.4	77	78.289	ENSPANG00000016381	-	79	71.905	Papio_anubis
ENSDARG00000063555	si:ch211-166g5.4	100	79.848	ENSPKIG00000018202	-	92	79.848	Paramormyrops_kingsleyae
ENSDARG00000063555	si:ch211-166g5.4	76	63.682	ENSPEMG00000008318	-	95	64.677	Peromyscus_maniculatus_bairdii
ENSDARG00000063555	si:ch211-166g5.4	53	44.444	ENSPMAG00000004866	-	99	39.867	Petromyzon_marinus
ENSDARG00000063555	si:ch211-166g5.4	100	80.586	ENSPFOG00000005397	si:ch211-166g5.4	99	69.734	Poecilia_formosa
ENSDARG00000063555	si:ch211-166g5.4	85	82.609	ENSPLAG00000017219	si:ch211-166g5.4	80	91.284	Poecilia_latipinna
ENSDARG00000063555	si:ch211-166g5.4	81	85.068	ENSPMEG00000017552	si:ch211-166g5.4	80	91.284	Poecilia_mexicana
ENSDARG00000063555	si:ch211-166g5.4	100	80.220	ENSPREG00000023113	si:ch211-166g5.4	99	69.342	Poecilia_reticulata
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSPCOG00000022370	MAZ	52	78.289	Propithecus_coquereli
ENSDARG00000063555	si:ch211-166g5.4	100	83.824	ENSPNAG00000004042	si:ch211-166g5.4	100	80.562	Pygocentrus_nattereri
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSRBIG00000001823	MAZ	79	71.905	Rhinopithecus_bieti
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSRROG00000026952	MAZ	79	71.905	Rhinopithecus_roxellana
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSSBOG00000020791	-	79	71.905	Saimiri_boliviensis_boliviensis
ENSDARG00000063555	si:ch211-166g5.4	100	80.989	ENSSFOG00015021699	si:ch211-166g5.4	76	82.510	Scleropages_formosus
ENSDARG00000063555	si:ch211-166g5.4	76	74.627	ENSSPUG00000010618	MAZ	56	79.605	Sphenodon_punctatus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSSSCG00000025321	MAZ	73	48.711	Sus_scrofa
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSTTRG00000005420	MAZ	77	50.725	Tursiops_truncatus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSUAMG00000004622	MAZ	79	71.905	Ursus_americanus
ENSDARG00000063555	si:ch211-166g5.4	80	71.905	ENSVVUG00000026097	MAZ	79	71.905	Vulpes_vulpes
ENSDARG00000063555	si:ch211-166g5.4	100	80.586	ENSXMAG00000023386	si:ch211-166g5.4	99	69.877	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function