EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000063663 (Gene tree)
Gene ID: 565621
Gene Symbol: clp1
Alias: fa28a12|wu:fa28a12
Full Name: cleavage and polyadenylation factor I subunit 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 16396 bases
Position: chr14:48982236-48998631
Accession: ZDB-GENE-030131-5306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000087664	Clp1	PF06807.14	9.2e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000093232	-	4292	-	ENSDARP00000087664	443 (aa)	-	E7F3I6

Gene Model

Click here to download ENSDARG00000063663's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000063663's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000063663	clp1	95	79.952	ENSG00000172409	CLP1	97	79.952	Homo_sapiens
ENSDARG00000063663	clp1	100	84.305	ENSAPOG00000008242	clp1	99	85.034	Acanthochromis_polyacanthus
ENSDARG00000063663	clp1	95	79.714	ENSAMEG00000014551	CLP1	95	79.714	Ailuropoda_melanoleuca
ENSDARG00000063663	clp1	100	83.632	ENSACIG00000006310	clp1	99	83.184	Amphilophus_citrinellus
ENSDARG00000063663	clp1	99	85.034	ENSAOCG00000010681	clp1	98	87.678	Amphiprion_ocellaris
ENSDARG00000063663	clp1	99	85.034	ENSAPEG00000012165	clp1	98	87.678	Amphiprion_percula
ENSDARG00000063663	clp1	100	84.081	ENSATEG00000012374	clp1	100	83.632	Anabas_testudineus
ENSDARG00000063663	clp1	94	79.426	ENSACAG00000007139	CLP1	97	79.426	Anolis_carolinensis
ENSDARG00000063663	clp1	95	79.952	ENSANAG00000034935	CLP1	97	79.952	Aotus_nancymaae
ENSDARG00000063663	clp1	100	83.632	ENSACLG00000013573	clp1	100	83.184	Astatotilapia_calliptera
ENSDARG00000063663	clp1	100	91.236	ENSAMXG00000014194	clp1	98	93.824	Astyanax_mexicanus
ENSDARG00000063663	clp1	95	79.714	ENSBTAG00000006493	CLP1	97	79.714	Bos_taurus
ENSDARG00000063663	clp1	94	47.981	WBGene00010304	clpf-1	97	47.981	Caenorhabditis_elegans
ENSDARG00000063663	clp1	95	79.952	ENSCJAG00000008748	CLP1	97	79.952	Callithrix_jacchus
ENSDARG00000063663	clp1	95	79.714	ENSCAFG00000007815	CLP1	97	79.714	Canis_familiaris
ENSDARG00000063663	clp1	95	79.714	ENSCAFG00020000903	CLP1	97	79.714	Canis_lupus_dingo
ENSDARG00000063663	clp1	95	79.714	ENSCHIG00000023497	CLP1	97	79.714	Capra_hircus
ENSDARG00000063663	clp1	96	78.689	ENSTSYG00000006824	CLP1	96	79.952	Carlito_syrichta
ENSDARG00000063663	clp1	97	78.140	ENSCAPG00000009703	CLP1	97	79.952	Cavia_aperea
ENSDARG00000063663	clp1	95	79.952	ENSCPOG00000012554	CLP1	99	79.952	Cavia_porcellus
ENSDARG00000063663	clp1	95	79.714	ENSCCAG00000031957	CLP1	97	79.714	Cebus_capucinus
ENSDARG00000063663	clp1	95	79.952	ENSCATG00000044628	CLP1	97	79.952	Cercocebus_atys
ENSDARG00000063663	clp1	95	79.952	ENSCLAG00000004094	CLP1	97	79.952	Chinchilla_lanigera
ENSDARG00000063663	clp1	95	79.952	ENSCSAG00000005994	CLP1	97	79.952	Chlorocebus_sabaeus
ENSDARG00000063663	clp1	96	78.454	ENSCPBG00000016843	CLP1	97	79.904	Chrysemys_picta_bellii
ENSDARG00000063663	clp1	94	61.631	ENSCING00000003779	-	96	61.631	Ciona_intestinalis
ENSDARG00000063663	clp1	94	62.019	ENSCSAVG00000003437	-	96	62.019	Ciona_savignyi
ENSDARG00000063663	clp1	95	79.952	ENSCANG00000034335	CLP1	97	79.952	Colobus_angolensis_palliatus
ENSDARG00000063663	clp1	95	79.475	ENSCGRG00001002227	CLP1	97	79.475	Cricetulus_griseus_chok1gshd
ENSDARG00000063663	clp1	95	79.475	ENSCGRG00000004328	CLP1	97	79.475	Cricetulus_griseus_crigri
ENSDARG00000063663	clp1	99	83.900	ENSCSEG00000008614	clp1	95	86.493	Cynoglossus_semilaevis
ENSDARG00000063663	clp1	100	84.305	ENSCVAG00000020101	clp1	100	84.081	Cyprinodon_variegatus
ENSDARG00000063663	clp1	94	79.426	ENSDNOG00000042415	CLP1	87	79.426	Dasypus_novemcinctus
ENSDARG00000063663	clp1	95	79.714	ENSDORG00000014685	Clp1	97	79.714	Dipodomys_ordii
ENSDARG00000063663	clp1	94	52.719	FBgn0033842	cbc	97	52.857	Drosophila_melanogaster
ENSDARG00000063663	clp1	95	79.952	ENSETEG00000003009	CLP1	97	79.952	Echinops_telfairi
ENSDARG00000063663	clp1	97	65.661	ENSEBUG00000011648	clp1	97	66.826	Eptatretus_burgeri
ENSDARG00000063663	clp1	95	79.952	ENSEASG00005002093	CLP1	97	79.952	Equus_asinus_asinus
ENSDARG00000063663	clp1	95	79.952	ENSECAG00000011597	CLP1	97	79.952	Equus_caballus
ENSDARG00000063663	clp1	95	79.475	ENSEEUG00000012771	CLP1	97	79.475	Erinaceus_europaeus
ENSDARG00000063663	clp1	100	88.315	ENSELUG00000024048	clp1	100	88.090	Esox_lucius
ENSDARG00000063663	clp1	95	79.714	ENSFCAG00000006633	CLP1	97	79.714	Felis_catus
ENSDARG00000063663	clp1	96	77.934	ENSFALG00000011145	CLP1	97	79.187	Ficedula_albicollis
ENSDARG00000063663	clp1	95	79.952	ENSFDAG00000000234	CLP1	97	79.952	Fukomys_damarensis
ENSDARG00000063663	clp1	100	84.081	ENSFHEG00000014760	CLP1	100	84.081	Fundulus_heteroclitus
ENSDARG00000063663	clp1	100	89.842	ENSGMOG00000019340	clp1	100	89.391	Gadus_morhua
ENSDARG00000063663	clp1	96	78.169	ENSGALG00000007370	CLP1	97	79.426	Gallus_gallus
ENSDARG00000063663	clp1	100	85.202	ENSGAFG00000003020	clp1	100	85.202	Gambusia_affinis
ENSDARG00000063663	clp1	95	86.854	ENSGACG00000017832	clp1	95	87.441	Gasterosteus_aculeatus
ENSDARG00000063663	clp1	96	78.689	ENSGAGG00000013279	CLP1	97	80.144	Gopherus_agassizii
ENSDARG00000063663	clp1	95	79.952	ENSGGOG00000023006	CLP1	97	79.952	Gorilla_gorilla
ENSDARG00000063663	clp1	100	83.857	ENSHBUG00000010436	clp1	100	83.408	Haplochromis_burtoni
ENSDARG00000063663	clp1	95	79.952	ENSHGLG00000009914	CLP1	97	79.952	Heterocephalus_glaber_female
ENSDARG00000063663	clp1	95	79.952	ENSHGLG00100006105	CLP1	97	79.952	Heterocephalus_glaber_male
ENSDARG00000063663	clp1	100	84.529	ENSHCOG00000010072	clp1	95	87.678	Hippocampus_comes
ENSDARG00000063663	clp1	100	91.704	ENSIPUG00000016238	clp1	99	90.807	Ictalurus_punctatus
ENSDARG00000063663	clp1	95	79.714	ENSSTOG00000029257	CLP1	97	79.714	Ictidomys_tridecemlineatus
ENSDARG00000063663	clp1	95	79.714	ENSJJAG00000023691	Clp1	97	79.714	Jaculus_jaculus
ENSDARG00000063663	clp1	100	84.978	ENSKMAG00000011990	clp1	100	84.753	Kryptolebias_marmoratus
ENSDARG00000063663	clp1	100	84.753	ENSLBEG00000010201	clp1	100	84.305	Labrus_bergylta
ENSDARG00000063663	clp1	95	78.043	ENSLACG00000003160	CLP1	97	78.043	Latimeria_chalumnae
ENSDARG00000063663	clp1	71	86.025	ENSLOCG00000008074	clp1	100	87.267	Lepisosteus_oculatus
ENSDARG00000063663	clp1	95	79.714	ENSLAFG00000014907	CLP1	97	79.714	Loxodonta_africana
ENSDARG00000063663	clp1	95	79.952	ENSMFAG00000046074	CLP1	97	79.952	Macaca_fascicularis
ENSDARG00000063663	clp1	95	79.952	ENSMMUG00000038007	CLP1	96	79.952	Macaca_mulatta
ENSDARG00000063663	clp1	95	79.952	ENSMNEG00000000259	CLP1	97	79.952	Macaca_nemestrina
ENSDARG00000063663	clp1	95	79.952	ENSMLEG00000043556	CLP1	97	79.952	Mandrillus_leucophaeus
ENSDARG00000063663	clp1	100	84.978	ENSMAMG00000002149	clp1	99	85.488	Mastacembelus_armatus
ENSDARG00000063663	clp1	100	83.632	ENSMZEG00005002850	clp1	100	83.184	Maylandia_zebra
ENSDARG00000063663	clp1	96	78.169	ENSMGAG00000009643	CLP1	97	79.426	Meleagris_gallopavo
ENSDARG00000063663	clp1	94	79.187	ENSMAUG00000016261	Clp1	97	79.187	Mesocricetus_auratus
ENSDARG00000063663	clp1	95	79.714	ENSMICG00000004895	CLP1	97	79.714	Microcebus_murinus
ENSDARG00000063663	clp1	95	79.714	ENSMOCG00000005498	Clp1	97	79.714	Microtus_ochrogaster
ENSDARG00000063663	clp1	100	82.960	ENSMMOG00000003229	clp1	95	86.256	Mola_mola
ENSDARG00000063663	clp1	94	79.426	ENSMODG00000024148	-	97	79.426	Monodelphis_domestica
ENSDARG00000063663	clp1	94	79.426	ENSMODG00000020107	-	97	79.426	Monodelphis_domestica
ENSDARG00000063663	clp1	100	84.978	ENSMALG00000014239	clp1	100	84.529	Monopterus_albus
ENSDARG00000063663	clp1	95	79.475	MGP_CAROLIEiJ_G0023726	Clp1	97	79.475	Mus_caroli
ENSDARG00000063663	clp1	95	79.475	ENSMUSG00000027079	Clp1	97	79.475	Mus_musculus
ENSDARG00000063663	clp1	95	79.475	MGP_PahariEiJ_G0025177	Clp1	97	79.475	Mus_pahari
ENSDARG00000063663	clp1	95	79.475	MGP_SPRETEiJ_G0024646	Clp1	97	79.475	Mus_spretus
ENSDARG00000063663	clp1	95	79.714	ENSMPUG00000000268	CLP1	97	79.714	Mustela_putorius_furo
ENSDARG00000063663	clp1	95	79.714	ENSMLUG00000007904	CLP1	97	79.714	Myotis_lucifugus
ENSDARG00000063663	clp1	95	79.475	ENSNGAG00000006165	Clp1	97	79.475	Nannospalax_galili
ENSDARG00000063663	clp1	100	83.857	ENSNBRG00000005225	clp1	100	83.408	Neolamprologus_brichardi
ENSDARG00000063663	clp1	77	76.190	ENSNLEG00000012809	-	96	76.190	Nomascus_leucogenys
ENSDARG00000063663	clp1	95	79.236	ENSMEUG00000010949	CLP1	97	79.236	Notamacropus_eugenii
ENSDARG00000063663	clp1	69	79.934	ENSOPRG00000007329	CLP1	100	79.934	Ochotona_princeps
ENSDARG00000063663	clp1	95	79.952	ENSODEG00000011410	CLP1	97	79.952	Octodon_degus
ENSDARG00000063663	clp1	100	84.081	ENSONIG00000005089	clp1	100	83.632	Oreochromis_niloticus
ENSDARG00000063663	clp1	95	79.714	ENSOCUG00000007045	CLP1	97	79.714	Oryctolagus_cuniculus
ENSDARG00000063663	clp1	99	85.488	ENSORLG00000003647	clp1	99	85.488	Oryzias_latipes
ENSDARG00000063663	clp1	99	85.261	ENSORLG00020016676	clp1	99	85.261	Oryzias_latipes_hni
ENSDARG00000063663	clp1	99	85.488	ENSORLG00015019484	clp1	99	85.488	Oryzias_latipes_hsok
ENSDARG00000063663	clp1	99	85.488	ENSOMEG00000021303	clp1	100	84.529	Oryzias_melastigma
ENSDARG00000063663	clp1	95	79.714	ENSOGAG00000004508	CLP1	97	79.714	Otolemur_garnettii
ENSDARG00000063663	clp1	95	78.520	ENSOARG00000010145	CLP1	96	78.520	Ovis_aries
ENSDARG00000063663	clp1	95	79.952	ENSPPAG00000041519	CLP1	97	79.952	Pan_paniscus
ENSDARG00000063663	clp1	95	79.714	ENSPPRG00000006135	CLP1	97	79.714	Panthera_pardus
ENSDARG00000063663	clp1	95	79.714	ENSPTIG00000015866	CLP1	97	79.714	Panthera_tigris_altaica
ENSDARG00000063663	clp1	95	79.952	ENSPTRG00000047318	CLP1	97	79.952	Pan_troglodytes
ENSDARG00000063663	clp1	95	79.952	ENSPANG00000017078	CLP1	95	79.952	Papio_anubis
ENSDARG00000063663	clp1	100	89.616	ENSPKIG00000007697	clp1	100	89.616	Paramormyrops_kingsleyae
ENSDARG00000063663	clp1	91	75.743	ENSPSIG00000005468	CLP1	97	77.215	Pelodiscus_sinensis
ENSDARG00000063663	clp1	100	84.305	ENSPMGG00000012171	clp1	100	83.632	Periophthalmus_magnuspinnatus
ENSDARG00000063663	clp1	95	79.714	ENSPEMG00000011213	-	97	79.714	Peromyscus_maniculatus_bairdii
ENSDARG00000063663	clp1	94	68.735	ENSPMAG00000006707	clp1	97	68.735	Petromyzon_marinus
ENSDARG00000063663	clp1	94	79.665	ENSPCIG00000011899	CLP1	97	79.665	Phascolarctos_cinereus
ENSDARG00000063663	clp1	100	84.978	ENSPFOG00000008169	clp1	100	84.978	Poecilia_formosa
ENSDARG00000063663	clp1	100	84.978	ENSPLAG00000022388	clp1	97	88.124	Poecilia_latipinna
ENSDARG00000063663	clp1	100	84.978	ENSPMEG00000021088	clp1	97	88.124	Poecilia_mexicana
ENSDARG00000063663	clp1	100	84.753	ENSPREG00000017802	clp1	100	84.753	Poecilia_reticulata
ENSDARG00000063663	clp1	52	76.522	ENSPPYG00000003266	-	100	76.522	Pongo_abelii
ENSDARG00000063663	clp1	95	79.714	ENSPCOG00000000360	CLP1	96	79.714	Propithecus_coquereli
ENSDARG00000063663	clp1	95	79.714	ENSPVAG00000016270	CLP1	97	79.714	Pteropus_vampyrus
ENSDARG00000063663	clp1	100	83.857	ENSPNYG00000017274	clp1	99	83.408	Pundamilia_nyererei
ENSDARG00000063663	clp1	100	93.034	ENSPNAG00000026460	clp1	100	93.034	Pygocentrus_nattereri
ENSDARG00000063663	clp1	95	79.475	ENSRNOG00000007416	Clp1	97	79.475	Rattus_norvegicus
ENSDARG00000063663	clp1	95	79.952	ENSRBIG00000018191	CLP1	97	79.952	Rhinopithecus_bieti
ENSDARG00000063663	clp1	95	79.952	ENSRROG00000039265	CLP1	97	79.952	Rhinopithecus_roxellana
ENSDARG00000063663	clp1	93	64.806	ENSSBOG00000010558	-	93	64.806	Saimiri_boliviensis_boliviensis
ENSDARG00000063663	clp1	95	79.952	ENSSBOG00000032517	-	97	79.952	Saimiri_boliviensis_boliviensis
ENSDARG00000063663	clp1	95	79.475	ENSSHAG00000015695	CLP1	97	79.475	Sarcophilus_harrisii
ENSDARG00000063663	clp1	100	87.556	ENSSFOG00015000628	clp1	100	87.556	Scleropages_formosus
ENSDARG00000063663	clp1	99	85.034	ENSSMAG00000019423	clp1	99	85.034	Scophthalmus_maximus
ENSDARG00000063663	clp1	100	84.753	ENSSDUG00000014495	clp1	100	84.305	Seriola_dumerili
ENSDARG00000063663	clp1	100	84.529	ENSSLDG00000000937	clp1	100	84.081	Seriola_lalandi_dorsalis
ENSDARG00000063663	clp1	52	75.983	ENSSARG00000002459	CLP1	100	75.983	Sorex_araneus
ENSDARG00000063663	clp1	94	79.187	ENSSPUG00000016811	CLP1	97	79.187	Sphenodon_punctatus
ENSDARG00000063663	clp1	99	85.034	ENSSPAG00000016052	clp1	99	85.034	Stegastes_partitus
ENSDARG00000063663	clp1	95	79.714	ENSSSCG00000031442	CLP1	97	79.714	Sus_scrofa
ENSDARG00000063663	clp1	96	77.934	ENSTGUG00000007002	CLP1	97	79.187	Taeniopygia_guttata
ENSDARG00000063663	clp1	96	84.813	ENSTRUG00000012602	clp1	95	85.782	Takifugu_rubripes
ENSDARG00000063663	clp1	96	84.346	ENSTNIG00000013125	clp1	95	85.071	Tetraodon_nigroviridis
ENSDARG00000063663	clp1	94	79.187	ENSTBEG00000009975	CLP1	97	79.187	Tupaia_belangeri
ENSDARG00000063663	clp1	95	80.191	ENSTTRG00000002096	CLP1	97	80.191	Tursiops_truncatus
ENSDARG00000063663	clp1	95	79.714	ENSUAMG00000011388	CLP1	97	79.714	Ursus_americanus
ENSDARG00000063663	clp1	95	79.714	ENSUMAG00000018317	CLP1	97	79.714	Ursus_maritimus
ENSDARG00000063663	clp1	95	79.714	ENSVVUG00000017138	CLP1	94	79.714	Vulpes_vulpes
ENSDARG00000063663	clp1	95	73.031	ENSXETG00000007088	clp1	95	73.747	Xenopus_tropicalis
ENSDARG00000063663	clp1	100	84.978	ENSXCOG00000002287	clp1	100	84.978	Xiphophorus_couchianus
ENSDARG00000063663	clp1	100	84.978	ENSXMAG00000009783	clp1	100	84.978	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000214	tRNA-intron endonuclease complex	-	IEA	Component
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005849	mRNA cleavage factor complex	-	IEA	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISS	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0007420	brain development	24766810.	IMP	Process
GO:0008033	tRNA processing	-	IEA	Process
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0021522	spinal cord motor neuron differentiation	24766810.	IMP	Process
GO:0021695	cerebellar cortex development	-	ISS	Process
GO:0031124	mRNA 3'-end processing	-	IEA	Process
GO:0035087	siRNA loading onto RISC involved in RNA interference	-	IEA	Process
GO:0046404	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	-	IEA	Function
GO:0051734	ATP-dependent polynucleotide kinase activity	-	IEA	Function
GO:0051736	ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity	24766810.	IMP	Function