EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000067639 (Gene tree)
Gene ID: 326944
Gene Symbol: prpf4
Alias: mg:ab03a02|zgc:65943
Full Name: PRP4 pre-mRNA processing factor 4 homolog (yeast)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 11521 bases
Position: chr5:57442271-57453791
Accession: ZDB-GENE-030131-5143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000088166	PRP4	PF08799.11	8.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000097395	-	1812	-	ENSDARP00000088166	507 (aa)	-	Q6PH45

Gene Model

Click here to download ENSDARG00000067639's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000067639's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000067639	prpf4	54	30.846	ENSDARG00000042553	pex7	77	30.846
ENSDARG00000067639	prpf4	57	32.895	ENSDARG00000052344	tbl3	65	32.895
ENSDARG00000067639	prpf4	57	36.364	ENSDARG00000016903	wdr5	93	36.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000067639	prpf4	99	80.000	ENSG00000136875	PRPF4	97	80.000	Homo_sapiens
ENSDARG00000067639	prpf4	99	79.503	ENSAPOG00000014132	prpf4	99	79.503	Acanthochromis_polyacanthus
ENSDARG00000067639	prpf4	99	79.802	ENSAMEG00000013048	PRPF4	95	79.802	Ailuropoda_melanoleuca
ENSDARG00000067639	prpf4	100	80.784	ENSACIG00000005579	prpf4	100	80.784	Amphilophus_citrinellus
ENSDARG00000067639	prpf4	100	80.000	ENSAOCG00000005457	prpf4	100	80.000	Amphiprion_ocellaris
ENSDARG00000067639	prpf4	100	79.804	ENSAPEG00000000776	prpf4	100	79.804	Amphiprion_percula
ENSDARG00000067639	prpf4	100	80.392	ENSATEG00000023013	prpf4	100	80.392	Anabas_testudineus
ENSDARG00000067639	prpf4	99	79.802	ENSAPLG00000006534	PRPF4	94	79.802	Anas_platyrhynchos
ENSDARG00000067639	prpf4	99	78.937	ENSACAG00000015110	PRPF4	97	78.937	Anolis_carolinensis
ENSDARG00000067639	prpf4	99	79.802	ENSANAG00000022464	PRPF4	93	79.802	Aotus_nancymaae
ENSDARG00000067639	prpf4	100	79.804	ENSACLG00000019031	prpf4	100	79.804	Astatotilapia_calliptera
ENSDARG00000067639	prpf4	100	68.451	ENSAMXG00000006756	prpf4	100	82.051	Astyanax_mexicanus
ENSDARG00000067639	prpf4	99	80.000	ENSBTAG00000004571	PRPF4	97	80.000	Bos_taurus
ENSDARG00000067639	prpf4	92	45.824	WBGene00007972	prp-4	94	45.824	Caenorhabditis_elegans
ENSDARG00000067639	prpf4	99	79.802	ENSCJAG00000017856	PRPF4	97	79.802	Callithrix_jacchus
ENSDARG00000067639	prpf4	99	79.802	ENSCAFG00000003224	PRPF4	94	79.802	Canis_familiaris
ENSDARG00000067639	prpf4	99	79.802	ENSCAFG00020022637	PRPF4	97	79.802	Canis_lupus_dingo
ENSDARG00000067639	prpf4	99	79.604	ENSCHIG00000024648	-	97	79.604	Capra_hircus
ENSDARG00000067639	prpf4	99	79.604	ENSTSYG00000010366	PRPF4	97	79.604	Carlito_syrichta
ENSDARG00000067639	prpf4	89	74.209	ENSCAPG00000008935	PRPF4	97	73.031	Cavia_aperea
ENSDARG00000067639	prpf4	99	74.257	ENSCPOG00000014729	-	97	74.257	Cavia_porcellus
ENSDARG00000067639	prpf4	99	79.406	ENSCPOG00000010747	-	97	79.406	Cavia_porcellus
ENSDARG00000067639	prpf4	99	80.000	ENSCCAG00000028990	PRPF4	97	80.000	Cebus_capucinus
ENSDARG00000067639	prpf4	99	79.802	ENSCATG00000021552	PRPF4	97	79.802	Cercocebus_atys
ENSDARG00000067639	prpf4	99	79.802	ENSCLAG00000013448	PRPF4	97	79.802	Chinchilla_lanigera
ENSDARG00000067639	prpf4	89	80.531	ENSCHOG00000007233	PRPF4	100	80.531	Choloepus_hoffmanni
ENSDARG00000067639	prpf4	100	79.093	ENSCPBG00000019136	PRPF4	73	79.093	Chrysemys_picta_bellii
ENSDARG00000067639	prpf4	94	61.237	ENSCING00000001299	-	95	61.237	Ciona_intestinalis
ENSDARG00000067639	prpf4	99	59.608	ENSCSAVG00000009178	-	99	61.290	Ciona_savignyi
ENSDARG00000067639	prpf4	99	79.802	ENSCANG00000003246	PRPF4	97	79.802	Colobus_angolensis_palliatus
ENSDARG00000067639	prpf4	99	79.802	ENSCGRG00001016992	Prpf4	97	79.802	Cricetulus_griseus_chok1gshd
ENSDARG00000067639	prpf4	99	79.802	ENSCGRG00000017560	Prpf4	97	79.802	Cricetulus_griseus_crigri
ENSDARG00000067639	prpf4	99	80.000	ENSCSEG00000020451	prpf4	99	80.000	Cynoglossus_semilaevis
ENSDARG00000067639	prpf4	99	79.406	ENSDNOG00000013203	PRPF4	97	79.406	Dasypus_novemcinctus
ENSDARG00000067639	prpf4	99	79.406	ENSDORG00000026275	Prpf4	97	79.406	Dipodomys_ordii
ENSDARG00000067639	prpf4	99	50.727	FBgn0036733	U4-U6-60K	99	50.909	Drosophila_melanogaster
ENSDARG00000067639	prpf4	99	79.010	ENSETEG00000020389	PRPF4	97	79.010	Echinops_telfairi
ENSDARG00000067639	prpf4	99	69.369	ENSEBUG00000015229	prpf4	88	69.820	Eptatretus_burgeri
ENSDARG00000067639	prpf4	99	79.802	ENSEASG00005022678	PRPF4	97	79.802	Equus_asinus_asinus
ENSDARG00000067639	prpf4	99	79.802	ENSECAG00000007072	PRPF4	97	79.802	Equus_caballus
ENSDARG00000067639	prpf4	99	62.132	ENSEEUG00000007480	PRPF4	96	62.132	Erinaceus_europaeus
ENSDARG00000067639	prpf4	100	87.179	ENSELUG00000007510	prpf4	100	87.179	Esox_lucius
ENSDARG00000067639	prpf4	99	79.802	ENSFCAG00000005514	PRPF4	97	79.802	Felis_catus
ENSDARG00000067639	prpf4	99	77.828	ENSFALG00000005423	PRPF4	85	77.828	Ficedula_albicollis
ENSDARG00000067639	prpf4	99	80.000	ENSFDAG00000005839	PRPF4	97	80.000	Fukomys_damarensis
ENSDARG00000067639	prpf4	100	80.980	ENSFHEG00000001300	prpf4	100	80.980	Fundulus_heteroclitus
ENSDARG00000067639	prpf4	99	79.842	ENSGALG00000008857	PRPF4	94	79.842	Gallus_gallus
ENSDARG00000067639	prpf4	94	76.596	ENSGAFG00000012164	prpf4	69	76.596	Gambusia_affinis
ENSDARG00000067639	prpf4	100	72.745	ENSGACG00000015476	prpf4	100	72.549	Gasterosteus_aculeatus
ENSDARG00000067639	prpf4	100	78.698	ENSGAGG00000025029	PRPF4	94	78.698	Gopherus_agassizii
ENSDARG00000067639	prpf4	99	80.000	ENSGGOG00000006943	PRPF4	97	80.000	Gorilla_gorilla
ENSDARG00000067639	prpf4	100	79.804	ENSHBUG00000000562	prpf4	100	79.804	Haplochromis_burtoni
ENSDARG00000067639	prpf4	99	64.554	ENSHGLG00000003838	-	97	64.554	Heterocephalus_glaber_female
ENSDARG00000067639	prpf4	96	67.146	ENSHGLG00000016628	-	95	67.762	Heterocephalus_glaber_female
ENSDARG00000067639	prpf4	99	79.406	ENSHGLG00000015191	PRPF4	97	79.406	Heterocephalus_glaber_female
ENSDARG00000067639	prpf4	99	64.554	ENSHGLG00100005571	-	97	64.554	Heterocephalus_glaber_male
ENSDARG00000067639	prpf4	100	87.179	ENSIPUG00000017956	PRPF4	100	87.179	Ictalurus_punctatus
ENSDARG00000067639	prpf4	99	79.604	ENSSTOG00000027833	PRPF4	97	79.604	Ictidomys_tridecemlineatus
ENSDARG00000067639	prpf4	99	79.604	ENSJJAG00000008838	Prpf4	97	79.604	Jaculus_jaculus
ENSDARG00000067639	prpf4	100	79.608	ENSKMAG00000013236	prpf4	100	79.608	Kryptolebias_marmoratus
ENSDARG00000067639	prpf4	100	80.512	ENSLBEG00000020611	prpf4	100	80.512	Labrus_bergylta
ENSDARG00000067639	prpf4	100	77.407	ENSLACG00000016317	PRPF4	97	77.407	Latimeria_chalumnae
ENSDARG00000067639	prpf4	100	85.404	ENSLOCG00000000581	prpf4	100	85.404	Lepisosteus_oculatus
ENSDARG00000067639	prpf4	99	79.802	ENSLAFG00000018225	PRPF4	97	79.802	Loxodonta_africana
ENSDARG00000067639	prpf4	99	79.604	ENSMFAG00000039397	PRPF4	97	79.604	Macaca_fascicularis
ENSDARG00000067639	prpf4	99	79.802	ENSMMUG00000005844	PRPF4	97	79.802	Macaca_mulatta
ENSDARG00000067639	prpf4	99	71.485	ENSMNEG00000033737	PRPF4	97	71.485	Macaca_nemestrina
ENSDARG00000067639	prpf4	99	79.802	ENSMLEG00000040284	PRPF4	97	79.802	Mandrillus_leucophaeus
ENSDARG00000067639	prpf4	99	79.882	ENSMAMG00000020141	prpf4	99	79.882	Mastacembelus_armatus
ENSDARG00000067639	prpf4	100	79.804	ENSMZEG00005023205	prpf4	100	79.804	Maylandia_zebra
ENSDARG00000067639	prpf4	99	79.249	ENSMGAG00000001796	PRPF4	94	79.249	Meleagris_gallopavo
ENSDARG00000067639	prpf4	99	79.802	ENSMAUG00000018022	Prpf4	97	79.802	Mesocricetus_auratus
ENSDARG00000067639	prpf4	99	79.802	ENSMICG00000015022	PRPF4	97	79.802	Microcebus_murinus
ENSDARG00000067639	prpf4	99	79.406	ENSMOCG00000018273	Prpf4	97	79.406	Microtus_ochrogaster
ENSDARG00000067639	prpf4	99	80.000	ENSMMOG00000021177	prpf4	99	80.000	Mola_mola
ENSDARG00000067639	prpf4	99	79.802	ENSMODG00000025096	-	94	79.802	Monodelphis_domestica
ENSDARG00000067639	prpf4	99	79.604	ENSMODG00000004444	-	97	79.604	Monodelphis_domestica
ENSDARG00000067639	prpf4	100	80.784	ENSMALG00000013624	prpf4	100	80.784	Monopterus_albus
ENSDARG00000067639	prpf4	99	79.802	MGP_CAROLIEiJ_G0026078	Prpf4	97	79.802	Mus_caroli
ENSDARG00000067639	prpf4	99	79.802	ENSMUSG00000066148	Prpf4	97	79.802	Mus_musculus
ENSDARG00000067639	prpf4	99	79.802	MGP_PahariEiJ_G0028413	Prpf4	97	79.802	Mus_pahari
ENSDARG00000067639	prpf4	99	79.802	MGP_SPRETEiJ_G0027042	Prpf4	97	79.802	Mus_spretus
ENSDARG00000067639	prpf4	99	79.802	ENSMPUG00000007883	PRPF4	97	79.802	Mustela_putorius_furo
ENSDARG00000067639	prpf4	99	79.802	ENSMLUG00000015309	-	94	79.802	Myotis_lucifugus
ENSDARG00000067639	prpf4	99	78.416	ENSMLUG00000008626	-	94	78.416	Myotis_lucifugus
ENSDARG00000067639	prpf4	99	74.653	ENSNGAG00000000468	Prpf4	97	74.653	Nannospalax_galili
ENSDARG00000067639	prpf4	100	80.000	ENSNBRG00000007972	prpf4	100	80.000	Neolamprologus_brichardi
ENSDARG00000067639	prpf4	99	79.802	ENSNLEG00000016647	PRPF4	97	79.802	Nomascus_leucogenys
ENSDARG00000067639	prpf4	99	79.802	ENSMEUG00000013256	PRPF4	98	79.802	Notamacropus_eugenii
ENSDARG00000067639	prpf4	99	79.604	ENSOPRG00000005302	PRPF4	97	79.604	Ochotona_princeps
ENSDARG00000067639	prpf4	99	79.802	ENSODEG00000018147	PRPF4	97	79.802	Octodon_degus
ENSDARG00000067639	prpf4	100	80.196	ENSONIG00000012671	prpf4	100	80.196	Oreochromis_niloticus
ENSDARG00000067639	prpf4	99	79.604	ENSOCUG00000005046	PRPF4	97	79.604	Oryctolagus_cuniculus
ENSDARG00000067639	prpf4	100	78.150	ENSORLG00000019641	prpf4	100	78.150	Oryzias_latipes
ENSDARG00000067639	prpf4	100	78.150	ENSORLG00020019438	prpf4	100	78.150	Oryzias_latipes_hni
ENSDARG00000067639	prpf4	100	77.756	ENSOMEG00000020941	prpf4	100	77.963	Oryzias_melastigma
ENSDARG00000067639	prpf4	99	76.040	ENSOGAG00000007802	PRPF4	95	76.040	Otolemur_garnettii
ENSDARG00000067639	prpf4	99	79.604	ENSOARG00000006319	PRPF4	94	79.604	Ovis_aries
ENSDARG00000067639	prpf4	99	80.000	ENSPPAG00000041797	PRPF4	97	80.000	Pan_paniscus
ENSDARG00000067639	prpf4	99	79.802	ENSPPRG00000014360	PRPF4	97	79.802	Panthera_pardus
ENSDARG00000067639	prpf4	99	79.802	ENSPTIG00000009574	PRPF4	97	79.802	Panthera_tigris_altaica
ENSDARG00000067639	prpf4	99	80.000	ENSPTRG00000021274	PRPF4	97	80.000	Pan_troglodytes
ENSDARG00000067639	prpf4	99	79.604	ENSPANG00000025776	PRPF4	93	79.604	Papio_anubis
ENSDARG00000067639	prpf4	100	89.152	ENSPKIG00000017259	prpf4	100	89.152	Paramormyrops_kingsleyae
ENSDARG00000067639	prpf4	100	78.698	ENSPSIG00000010713	PRPF4	89	78.698	Pelodiscus_sinensis
ENSDARG00000067639	prpf4	100	58.101	ENSPMGG00000000997	prpf4	98	59.032	Periophthalmus_magnuspinnatus
ENSDARG00000067639	prpf4	99	79.802	ENSPEMG00000024115	Prpf4	97	79.802	Peromyscus_maniculatus_bairdii
ENSDARG00000067639	prpf4	99	80.000	ENSPCIG00000003821	PRPF4	98	80.000	Phascolarctos_cinereus
ENSDARG00000067639	prpf4	100	73.152	ENSPFOG00000013524	prpf4	99	76.596	Poecilia_formosa
ENSDARG00000067639	prpf4	93	75.466	ENSPLAG00000011620	prpf4	99	72.948	Poecilia_latipinna
ENSDARG00000067639	prpf4	98	77.286	ENSPMEG00000006813	prpf4	100	77.286	Poecilia_mexicana
ENSDARG00000067639	prpf4	99	79.802	ENSPCAG00000002561	PRPF4	98	79.802	Procavia_capensis
ENSDARG00000067639	prpf4	99	80.000	ENSPCOG00000011975	PRPF4	97	80.000	Propithecus_coquereli
ENSDARG00000067639	prpf4	99	76.832	ENSPVAG00000004708	PRPF4	97	76.832	Pteropus_vampyrus
ENSDARG00000067639	prpf4	100	79.804	ENSPNYG00000008013	prpf4	100	79.804	Pundamilia_nyererei
ENSDARG00000067639	prpf4	100	88.166	ENSPNAG00000000697	prpf4	100	88.166	Pygocentrus_nattereri
ENSDARG00000067639	prpf4	99	79.604	ENSRNOG00000014777	Prpf4	97	79.604	Rattus_norvegicus
ENSDARG00000067639	prpf4	99	79.802	ENSRBIG00000040221	PRPF4	97	79.802	Rhinopithecus_bieti
ENSDARG00000067639	prpf4	99	79.802	ENSRROG00000040240	PRPF4	97	79.802	Rhinopithecus_roxellana
ENSDARG00000067639	prpf4	99	80.000	ENSSHAG00000017658	PRPF4	97	80.000	Sarcophilus_harrisii
ENSDARG00000067639	prpf4	100	88.955	ENSSFOG00015008963	prpf4	100	88.955	Scleropages_formosus
ENSDARG00000067639	prpf4	100	80.196	ENSSMAG00000008889	prpf4	100	80.196	Scophthalmus_maximus
ENSDARG00000067639	prpf4	99	79.917	ENSSDUG00000022083	prpf4	94	79.917	Seriola_dumerili
ENSDARG00000067639	prpf4	99	80.124	ENSSLDG00000008115	prpf4	94	80.124	Seriola_lalandi_dorsalis
ENSDARG00000067639	prpf4	99	80.237	ENSSPUG00000015582	PRPF4	97	80.237	Sphenodon_punctatus
ENSDARG00000067639	prpf4	100	74.464	ENSSPAG00000011286	prpf4	100	74.464	Stegastes_partitus
ENSDARG00000067639	prpf4	99	79.802	ENSSSCG00000024648	PRPF4	97	79.802	Sus_scrofa
ENSDARG00000067639	prpf4	97	80.122	ENSTGUG00000002623	PRPF4	100	80.164	Taeniopygia_guttata
ENSDARG00000067639	prpf4	99	81.028	ENSTRUG00000008853	prpf4	99	81.028	Takifugu_rubripes
ENSDARG00000067639	prpf4	99	80.792	ENSTNIG00000013250	prpf4	99	80.792	Tetraodon_nigroviridis
ENSDARG00000067639	prpf4	99	72.871	ENSTBEG00000000821	PRPF4	97	72.871	Tupaia_belangeri
ENSDARG00000067639	prpf4	89	84.884	ENSTTRG00000003246	PRPF4	85	84.884	Tursiops_truncatus
ENSDARG00000067639	prpf4	70	69.859	ENSUAMG00000018288	PRPF4	96	69.859	Ursus_americanus
ENSDARG00000067639	prpf4	99	79.208	ENSUMAG00000019375	PRPF4	97	79.208	Ursus_maritimus
ENSDARG00000067639	prpf4	99	79.802	ENSVPAG00000005281	PRPF4	97	79.802	Vicugna_pacos
ENSDARG00000067639	prpf4	99	79.604	ENSVVUG00000002476	PRPF4	99	79.604	Vulpes_vulpes
ENSDARG00000067639	prpf4	71	58.496	ENSXCOG00000006101	prpf4	93	62.129	Xiphophorus_couchianus
ENSDARG00000067639	prpf4	91	66.379	ENSXMAG00000002750	prpf4	99	68.762	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0009792	embryo development ending in birth or egg hatching	25383878.	IMP	Process
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0030621	U4 snRNA binding	21873635.	IBA	Function
GO:0043009	chordate embryonic development	24419317.	IMP	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0060041	retina development in camera-type eye	21051334.	IMP	Process