EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000068755 (Gene tree)
Gene ID
323016
Gene Symbol
exosc8
Alias
Opa-interacting protein 2 (3' exoribonuclease family)|wu:fb79a10|zgc:110381
Full Name
exosome component 8
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Plus strand
Length
8717 bases
Position
chr10:35002786-35011502
Accession
ZDB-GENE-030131-1736
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000090326RNase_PHPF01138.214.4e-2811
ENSDARP00000090326RNase_PH_CPF03725.151.1e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000147865-407--- (aa)--
ENSDART00000145238-847--- (aa)--
ENSDART00000099552-969-ENSDARP00000090326277 (aa)-Q4VBT6
Gene Model
Click here to download ENSDARG00000068755's gene model file
Pathways
Pathway IDPathway NameSource
dre03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000068755's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000068755exosc89970.803ENSG00000120699EXOSC89674.194Homo_sapiens
ENSDARG00000068755exosc88330.380ENSAPOG00000023524exosc78130.380Acanthochromis_polyacanthus
ENSDARG00000068755exosc89467.931ENSAPOG00000002211exosc89567.931Acanthochromis_polyacanthus
ENSDARG00000068755exosc89971.636ENSAMEG00000015762EXOSC89971.636Ailuropoda_melanoleuca
ENSDARG00000068755exosc810076.534ENSACIG00000023510exosc810076.534Amphilophus_citrinellus
ENSDARG00000068755exosc810074.729ENSAOCG00000015357exosc810074.729Amphiprion_ocellaris
ENSDARG00000068755exosc810072.563ENSAPEG00000020401exosc810072.563Amphiprion_percula
ENSDARG00000068755exosc88330.085ENSATEG00000008157exosc78130.085Anabas_testudineus
ENSDARG00000068755exosc810077.256ENSATEG00000002924exosc810077.256Anabas_testudineus
ENSDARG00000068755exosc89970.909ENSAPLG00000007895EXOSC88970.909Anas_platyrhynchos
ENSDARG00000068755exosc89967.399ENSACAG00000017648EXOSC89867.399Anolis_carolinensis
ENSDARG00000068755exosc89970.803ENSANAG00000028910EXOSC89970.803Aotus_nancymaae
ENSDARG00000068755exosc89977.372ENSACLG00000002981exosc89977.372Astatotilapia_calliptera
ENSDARG00000068755exosc810079.783ENSAMXG00000016238exosc810079.783Astyanax_mexicanus
ENSDARG00000068755exosc89970.073ENSBTAG00000011855EXOSC89970.073Bos_taurus
ENSDARG00000068755exosc89971.168ENSCJAG00000018078EXOSC89971.168Callithrix_jacchus
ENSDARG00000068755exosc89972.628ENSCAFG00000006115EXOSC89972.628Canis_familiaris
ENSDARG00000068755exosc89871.218ENSCAFG00020021481EXOSC88571.218Canis_lupus_dingo
ENSDARG00000068755exosc89768.148ENSCHIG00000008153EXOSC89868.148Capra_hircus
ENSDARG00000068755exosc89971.168ENSTSYG00000013226EXOSC89971.168Carlito_syrichta
ENSDARG00000068755exosc89971.898ENSCPOG00000004450EXOSC89971.898Cavia_porcellus
ENSDARG00000068755exosc89971.168ENSCCAG00000023491EXOSC89971.168Cebus_capucinus
ENSDARG00000068755exosc89971.168ENSCATG00000040502EXOSC89971.168Cercocebus_atys
ENSDARG00000068755exosc89871.691ENSCLAG00000003456EXOSC89971.691Chinchilla_lanigera
ENSDARG00000068755exosc89971.168ENSCSAG00000017867EXOSC89971.168Chlorocebus_sabaeus
ENSDARG00000068755exosc89771.269ENSCHOG00000009005EXOSC89971.269Choloepus_hoffmanni
ENSDARG00000068755exosc89971.533ENSCPBG00000003168EXOSC89971.533Chrysemys_picta_bellii
ENSDARG00000068755exosc89950.545ENSCING00000004231-9950.545Ciona_intestinalis
ENSDARG00000068755exosc89646.816ENSCSAVG00000002321-9846.816Ciona_savignyi
ENSDARG00000068755exosc89971.168ENSCANG00000040247EXOSC89971.168Colobus_angolensis_palliatus
ENSDARG00000068755exosc89970.073ENSCGRG00001012262Exosc89970.073Cricetulus_griseus_chok1gshd
ENSDARG00000068755exosc89769.403ENSCGRG00000003184Exosc89969.403Cricetulus_griseus_crigri
ENSDARG00000068755exosc88330.380ENSCSEG00000011080exosc78130.380Cynoglossus_semilaevis
ENSDARG00000068755exosc810074.007ENSCSEG00000019201exosc810074.007Cynoglossus_semilaevis
ENSDARG00000068755exosc89479.310ENSCVAG00000010277exosc89678.903Cyprinodon_variegatus
ENSDARG00000068755exosc89970.438ENSDNOG00000019133EXOSC89170.438Dasypus_novemcinctus
ENSDARG00000068755exosc89971.533ENSDORG00000011062Exosc89971.533Dipodomys_ordii
ENSDARG00000068755exosc89947.810ENSETEG00000003498EXOSC89947.810Echinops_telfairi
ENSDARG00000068755exosc87157.653ENSEBUG00000008140exosc89557.653Eptatretus_burgeri
ENSDARG00000068755exosc89770.741ENSEASG00005019832EXOSC89870.741Equus_asinus_asinus
ENSDARG00000068755exosc89971.533ENSECAG00000012606EXOSC89971.533Equus_caballus
ENSDARG00000068755exosc89761.940ENSEEUG00000000433EXOSC89961.940Erinaceus_europaeus
ENSDARG00000068755exosc89976.727ENSELUG00000008648exosc89976.727Esox_lucius
ENSDARG00000068755exosc89972.263ENSFCAG00000003815EXOSC89972.263Felis_catus
ENSDARG00000068755exosc89670.301ENSFALG00000008262EXOSC88370.301Ficedula_albicollis
ENSDARG00000068755exosc89972.364ENSFDAG00000000161EXOSC88372.364Fukomys_damarensis
ENSDARG00000068755exosc810077.256ENSFHEG00000001409exosc810077.256Fundulus_heteroclitus
ENSDARG00000068755exosc810076.534ENSGMOG00000012314exosc810076.534Gadus_morhua
ENSDARG00000068755exosc89970.803ENSGALG00000017048EXOSC89970.803Gallus_gallus
ENSDARG00000068755exosc810075.627ENSGAFG00000020868exosc810075.627Gambusia_affinis
ENSDARG00000068755exosc810076.534ENSGACG00000020564exosc810076.534Gasterosteus_aculeatus
ENSDARG00000068755exosc87668.571ENSGAGG00000006811EXOSC89668.571Gopherus_agassizii
ENSDARG00000068755exosc89970.803ENSGGOG00000011902EXOSC89970.803Gorilla_gorilla
ENSDARG00000068755exosc88330.802ENSHBUG00000009582exosc78430.802Haplochromis_burtoni
ENSDARG00000068755exosc89776.866ENSHBUG00000006959exosc89976.866Haplochromis_burtoni
ENSDARG00000068755exosc89971.533ENSHGLG00000002963EXOSC89971.533Heterocephalus_glaber_female
ENSDARG00000068755exosc89971.533ENSHGLG00100011167-9971.533Heterocephalus_glaber_male
ENSDARG00000068755exosc89872.426ENSHCOG00000011740exosc89972.426Hippocampus_comes
ENSDARG00000068755exosc88331.356ENSHCOG00000007761exosc78131.356Hippocampus_comes
ENSDARG00000068755exosc810080.505ENSIPUG00000009497exosc88680.505Ictalurus_punctatus
ENSDARG00000068755exosc88330.380ENSIPUG00000012381exosc78130.380Ictalurus_punctatus
ENSDARG00000068755exosc810046.931ENSSTOG00000033940-9746.931Ictidomys_tridecemlineatus
ENSDARG00000068755exosc89970.073ENSJJAG00000010023-9970.073Jaculus_jaculus
ENSDARG00000068755exosc89770.522ENSJJAG00000022752-9970.522Jaculus_jaculus
ENSDARG00000068755exosc810076.173ENSKMAG00000005249exosc810076.173Kryptolebias_marmoratus
ENSDARG00000068755exosc88330.380ENSKMAG00000012799exosc78130.380Kryptolebias_marmoratus
ENSDARG00000068755exosc89980.220ENSLBEG00000020568exosc89578.903Labrus_bergylta
ENSDARG00000068755exosc88674.790ENSLACG00000009536EXOSC89874.790Latimeria_chalumnae
ENSDARG00000068755exosc89975.362ENSLOCG00000008503exosc89975.362Lepisosteus_oculatus
ENSDARG00000068755exosc89970.803ENSLAFG00000014242EXOSC89970.803Loxodonta_africana
ENSDARG00000068755exosc89971.168ENSMFAG00000027794EXOSC89971.168Macaca_fascicularis
ENSDARG00000068755exosc89971.168ENSMMUG00000003588EXOSC89674.194Macaca_mulatta
ENSDARG00000068755exosc89971.168ENSMNEG00000032970EXOSC89971.168Macaca_nemestrina
ENSDARG00000068755exosc89768.148ENSMLEG00000040861EXOSC89868.148Mandrillus_leucophaeus
ENSDARG00000068755exosc88330.380ENSMAMG00000002527exosc78630.380Mastacembelus_armatus
ENSDARG00000068755exosc810077.617ENSMAMG00000014077exosc810077.617Mastacembelus_armatus
ENSDARG00000068755exosc89977.372ENSMZEG00005024472exosc89977.372Maylandia_zebra
ENSDARG00000068755exosc89770.111ENSMGAG00000015057EXOSC89870.111Meleagris_gallopavo
ENSDARG00000068755exosc88466.953ENSMAUG00000017812Exosc89666.953Mesocricetus_auratus
ENSDARG00000068755exosc89970.803ENSMICG00000003353EXOSC89970.803Microcebus_murinus
ENSDARG00000068755exosc88567.234ENSMOCG00000017293Exosc89467.234Microtus_ochrogaster
ENSDARG00000068755exosc88174.439ENSMMOG00000010530exosc810074.439Mola_mola
ENSDARG00000068755exosc89969.343ENSMODG00000010052EXOSC89969.343Monodelphis_domestica
ENSDARG00000068755exosc89476.538ENSMALG00000010744exosc89976.357Monopterus_albus
ENSDARG00000068755exosc88330.802ENSMALG00000009471exosc78130.802Monopterus_albus
ENSDARG00000068755exosc89970.073MGP_CAROLIEiJ_G0024992Exosc810075.385Mus_caroli
ENSDARG00000068755exosc89969.708ENSMUSG00000027752Exosc810075.385Mus_musculus
ENSDARG00000068755exosc89970.803MGP_PahariEiJ_G0026433Exosc810077.692Mus_pahari
ENSDARG00000068755exosc89970.073MGP_SPRETEiJ_G0025927Exosc810075.385Mus_spretus
ENSDARG00000068755exosc89972.263ENSMPUG00000001833EXOSC89972.263Mustela_putorius_furo
ENSDARG00000068755exosc89868.498ENSNGAG00000020518Exosc89969.173Nannospalax_galili
ENSDARG00000068755exosc89968.662ENSNBRG00000012967exosc89968.662Neolamprologus_brichardi
ENSDARG00000068755exosc89971.533ENSNLEG00000001745EXOSC89971.533Nomascus_leucogenys
ENSDARG00000068755exosc89966.058ENSMEUG00000008050EXOSC89966.058Notamacropus_eugenii
ENSDARG00000068755exosc89966.788ENSOPRG00000004966EXOSC89966.788Ochotona_princeps
ENSDARG00000068755exosc89668.421ENSODEG00000003316-9768.421Octodon_degus
ENSDARG00000068755exosc89971.168ENSODEG00000009230-9971.168Octodon_degus
ENSDARG00000068755exosc89964.599ENSODEG00000014890-9964.599Octodon_degus
ENSDARG00000068755exosc89962.774ENSODEG00000017401-9962.774Octodon_degus
ENSDARG00000068755exosc89976.277ENSONIG00000012607exosc89976.277Oreochromis_niloticus
ENSDARG00000068755exosc89969.343ENSOANG00000015500EXOSC89069.343Ornithorhynchus_anatinus
ENSDARG00000068755exosc89971.898ENSOCUG00000007465EXOSC89971.898Oryctolagus_cuniculus
ENSDARG00000068755exosc88330.380ENSORLG00000002251exosc78130.380Oryzias_latipes
ENSDARG00000068755exosc810073.646ENSORLG00000004025exosc810073.646Oryzias_latipes
ENSDARG00000068755exosc810073.646ENSORLG00020013129exosc810073.646Oryzias_latipes_hni
ENSDARG00000068755exosc810073.646ENSORLG00015019052exosc810073.646Oryzias_latipes_hsok
ENSDARG00000068755exosc810072.924ENSOMEG00000013266exosc810072.924Oryzias_melastigma
ENSDARG00000068755exosc89970.438ENSOGAG00000002745EXOSC89970.438Otolemur_garnettii
ENSDARG00000068755exosc89968.978ENSOARG00000010229EXOSC89968.978Ovis_aries
ENSDARG00000068755exosc89971.168ENSPPAG00000027267EXOSC89971.168Pan_paniscus
ENSDARG00000068755exosc89654.340ENSPPRG00000022630-9753.962Panthera_pardus
ENSDARG00000068755exosc89972.263ENSPPRG00000022901-9972.263Panthera_pardus
ENSDARG00000068755exosc89970.803ENSPTIG00000001519EXOSC89970.803Panthera_tigris_altaica
ENSDARG00000068755exosc89971.168ENSPTRG00000005790EXOSC89971.168Pan_troglodytes
ENSDARG00000068755exosc89971.168ENSPANG00000019344EXOSC89971.168Papio_anubis
ENSDARG00000068755exosc88473.820ENSPKIG00000023257exosc89573.820Paramormyrops_kingsleyae
ENSDARG00000068755exosc88530.705ENSPKIG00000014229exosc78231.535Paramormyrops_kingsleyae
ENSDARG00000068755exosc89971.533ENSPSIG00000002406EXOSC810071.533Pelodiscus_sinensis
ENSDARG00000068755exosc89975.912ENSPMGG00000018185exosc89975.912Periophthalmus_magnuspinnatus
ENSDARG00000068755exosc89970.438ENSPEMG00000010801Exosc89970.438Peromyscus_maniculatus_bairdii
ENSDARG00000068755exosc89966.304ENSPMAG00000004395exosc89866.304Petromyzon_marinus
ENSDARG00000068755exosc89969.708ENSPCIG00000021634EXOSC89969.708Phascolarctos_cinereus
ENSDARG00000068755exosc89977.289ENSPLAG00000020762exosc89778.148Poecilia_latipinna
ENSDARG00000068755exosc86972.775ENSPMEG00000023498-8572.775Poecilia_mexicana
ENSDARG00000068755exosc810078.700ENSPMEG00000000980exosc810078.700Poecilia_mexicana
ENSDARG00000068755exosc810075.269ENSPREG00000011598exosc810075.269Poecilia_reticulata
ENSDARG00000068755exosc89970.073ENSPPYG00000005287EXOSC89970.073Pongo_abelii
ENSDARG00000068755exosc85530.719ENSPCAG00000001772EXOSC75330.719Procavia_capensis
ENSDARG00000068755exosc88453.419ENSPCAG00000014966EXOSC88553.419Procavia_capensis
ENSDARG00000068755exosc89970.803ENSPCOG00000018867EXOSC89970.803Propithecus_coquereli
ENSDARG00000068755exosc89872.426ENSPVAG00000014610EXOSC89972.426Pteropus_vampyrus
ENSDARG00000068755exosc89468.182ENSPNYG00000013016exosc89668.182Pundamilia_nyererei
ENSDARG00000068755exosc810079.061ENSPNAG00000020509exosc810079.061Pygocentrus_nattereri
ENSDARG00000068755exosc88568.085ENSRNOG00000051623Exosc89768.085Rattus_norvegicus
ENSDARG00000068755exosc89970.803ENSRBIG00000027590EXOSC89970.803Rhinopithecus_bieti
ENSDARG00000068755exosc89970.803ENSRROG00000022383-9970.803Rhinopithecus_roxellana
ENSDARG00000068755exosc89966.423ENSRROG00000026332-9966.423Rhinopithecus_roxellana
ENSDARG00000068755exosc89971.533ENSSBOG00000004631EXOSC89971.533Saimiri_boliviensis_boliviensis
ENSDARG00000068755exosc89970.803ENSSHAG00000005532EXOSC89970.803Sarcophilus_harrisii
ENSDARG00000068755exosc810077.978ENSSFOG00015005651exosc810077.978Scleropages_formosus
ENSDARG00000068755exosc89976.642ENSSMAG00000018819exosc89976.642Scophthalmus_maximus
ENSDARG00000068755exosc810076.895ENSSDUG00000014161exosc810076.895Seriola_dumerili
ENSDARG00000068755exosc88330.380ENSSDUG00000019570exosc78130.380Seriola_dumerili
ENSDARG00000068755exosc89876.471ENSSLDG00000023126exosc89676.471Seriola_lalandi_dorsalis
ENSDARG00000068755exosc88330.380ENSSLDG00000024102exosc78130.380Seriola_lalandi_dorsalis
ENSDARG00000068755exosc89965.693ENSSARG00000013914EXOSC89965.693Sorex_araneus
ENSDARG00000068755exosc89269.141ENSSPUG00000016825EXOSC89969.141Sphenodon_punctatus
ENSDARG00000068755exosc88330.672ENSSPAG00000004284exosc78130.672Stegastes_partitus
ENSDARG00000068755exosc810078.700ENSSPAG00000003434exosc810078.700Stegastes_partitus
ENSDARG00000068755exosc89767.778ENSSSCG00000009358EXOSC88567.778Sus_scrofa
ENSDARG00000068755exosc89670.149ENSTGUG00000011908EXOSC89970.149Taeniopygia_guttata
ENSDARG00000068755exosc88330.802ENSTRUG00000008320exosc78030.802Takifugu_rubripes
ENSDARG00000068755exosc89974.182ENSTRUG00000001657exosc89974.182Takifugu_rubripes
ENSDARG00000068755exosc89976.642ENSTNIG00000009927exosc89976.642Tetraodon_nigroviridis
ENSDARG00000068755exosc89646.617ENSTBEG00000000079-9946.617Tupaia_belangeri
ENSDARG00000068755exosc89970.803ENSTBEG00000012040EXOSC89970.803Tupaia_belangeri
ENSDARG00000068755exosc89866.421ENSTTRG00000007906EXOSC810066.421Tursiops_truncatus
ENSDARG00000068755exosc89671.698ENSUAMG00000000695EXOSC89171.698Ursus_americanus
ENSDARG00000068755exosc89971.636ENSUMAG00000024024EXOSC89971.636Ursus_maritimus
ENSDARG00000068755exosc89963.504ENSVPAG00000007287EXOSC89963.504Vicugna_pacos
ENSDARG00000068755exosc89972.628ENSVVUG00000026660EXOSC89771.481Vulpes_vulpes
ENSDARG00000068755exosc88331.933ENSXETG00000020144exosc78131.933Xenopus_tropicalis
ENSDARG00000068755exosc89966.182ENSXETG00000001819exosc89966.182Xenopus_tropicalis
ENSDARG00000068755exosc89975.824ENSXCOG00000010128exosc89775.824Xiphophorus_couchianus
ENSDARG00000068755exosc810077.617ENSXMAG00000008621exosc810077.617Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000176nuclear exosome (RNase complex)21873635.IBAComponent
GO:0000177cytoplasmic exosome (RNase complex)21873635.IBAComponent
GO:0000178exosome (RNase complex)-IEAComponent
GO:0000467exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)21873635.IBAProcess
GO:0006396RNA processing-IEAProcess
GO:0006401RNA catabolic process-IEAProcess
GO:0007409axonogenesis27193168.IMPProcess
GO:0007420brain development24989451.IMPProcess
GO:0016075rRNA catabolic process21873635.IBAProcess
GO:0017091AU-rich element binding21873635.IBAFunction
GO:0021693cerebellar Purkinje cell layer structural organization27193168.IMPProcess
GO:0034427nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'21873635.IBAProcess
GO:0034473U1 snRNA 3'-end processing21873635.IBAProcess
GO:0034475U4 snRNA 3'-end processing21873635.IBAProcess
GO:0034476U5 snRNA 3'-end processing21873635.IBAProcess
GO:0042552myelination24989451.IMPProcess
GO:0043928exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay21873635.IBAProcess
GO:0071028nuclear mRNA surveillance21873635.IBAProcess
GO:0071035nuclear polyadenylation-dependent rRNA catabolic process21873635.IBAProcess
GO:0071038nuclear polyadenylation-dependent tRNA catabolic process21873635.IBAProcess
GO:0071042nuclear polyadenylation-dependent mRNA catabolic process21873635.IBAProcess

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