EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000069297 (Gene tree)
Gene ID: 566608
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 12424 bases
Position: chr9:34902971-34915394
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000091501	Smg4_UPF3	PF03467.15	1.2e-53	1	1
ENSDARP00000114416	Smg4_UPF3	PF03467.15	1.3e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000100728	-	1359	XM_005167851	ENSDARP00000091501	452 (aa)	XP_005167908	B0S733
ENSDART00000139608	-	1775	XM_005167850	ENSDARP00000114416	478 (aa)	XP_005167907	B0S733
ENSDART00000129936	-	1309	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000069297's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000069297's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000069297	upf3a	84	49.635	ENSDARG00000000489	upf3b	88	51.202

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000069297	upf3a	99	53.498	ENSG00000169062	UPF3A	99	53.498	Homo_sapiens
ENSDARG00000069297	upf3a	99	81.278	ENSAPOG00000013484	upf3a	99	80.477	Acanthochromis_polyacanthus
ENSDARG00000069297	upf3a	93	50.881	ENSAPOG00000012775	upf3b	95	49.220	Acanthochromis_polyacanthus
ENSDARG00000069297	upf3a	86	58.313	ENSAMEG00000004259	UPF3A	88	58.313	Ailuropoda_melanoleuca
ENSDARG00000069297	upf3a	99	78.197	ENSACIG00000020468	upf3a	99	78.361	Amphilophus_citrinellus
ENSDARG00000069297	upf3a	93	48.673	ENSAOCG00000000706	upf3b	95	49.103	Amphiprion_ocellaris
ENSDARG00000069297	upf3a	100	81.210	ENSAOCG00000020784	upf3a	99	81.210	Amphiprion_ocellaris
ENSDARG00000069297	upf3a	100	81.210	ENSAPEG00000003519	upf3a	99	81.210	Amphiprion_percula
ENSDARG00000069297	upf3a	93	50.331	ENSAPEG00000005545	upf3b	95	50.223	Amphiprion_percula
ENSDARG00000069297	upf3a	100	80.562	ENSATEG00000005843	upf3a	99	80.562	Anabas_testudineus
ENSDARG00000069297	upf3a	89	50.797	ENSATEG00000018742	upf3b	91	49.773	Anabas_testudineus
ENSDARG00000069297	upf3a	89	64.593	ENSACAG00000001540	UPF3A	100	64.593	Anolis_carolinensis
ENSDARG00000069297	upf3a	84	48.492	ENSANAG00000025598	-	62	71.014	Aotus_nancymaae
ENSDARG00000069297	upf3a	92	53.211	ENSANAG00000021713	UPF3A	87	53.211	Aotus_nancymaae
ENSDARG00000069297	upf3a	84	53.269	ENSANAG00000021894	-	77	73.333	Aotus_nancymaae
ENSDARG00000069297	upf3a	99	78.481	ENSACLG00000026274	upf3a	98	78.647	Astatotilapia_calliptera
ENSDARG00000069297	upf3a	100	86.722	ENSAMXG00000002608	upf3a	100	86.722	Astyanax_mexicanus
ENSDARG00000069297	upf3a	99	50.103	ENSCJAG00000019102	UPF3A	99	50.722	Callithrix_jacchus
ENSDARG00000069297	upf3a	84	53.125	ENSCJAG00000004975	UPF3B	77	72.727	Callithrix_jacchus
ENSDARG00000069297	upf3a	84	47.859	ENSCAFG00020004074	UPF3B	63	76.712	Canis_lupus_dingo
ENSDARG00000069297	upf3a	85	57.071	ENSCHIG00000008682	UPF3A	78	57.071	Capra_hircus
ENSDARG00000069297	upf3a	74	55.211	ENSTSYG00000001918	UPF3A	95	55.211	Carlito_syrichta
ENSDARG00000069297	upf3a	84	52.311	ENSTSYG00000014690	UPF3B	76	68.235	Carlito_syrichta
ENSDARG00000069297	upf3a	73	58.213	ENSCPOG00000006824	UPF3A	79	58.213	Cavia_porcellus
ENSDARG00000069297	upf3a	99	52.058	ENSCCAG00000018406	UPF3A	99	52.058	Cebus_capucinus
ENSDARG00000069297	upf3a	83	41.558	ENSCCAG00000029813	-	52	62.658	Cebus_capucinus
ENSDARG00000069297	upf3a	99	54.393	ENSCATG00000029733	UPF3A	99	54.393	Cercocebus_atys
ENSDARG00000069297	upf3a	99	53.878	ENSCSAG00000017388	UPF3A	99	53.878	Chlorocebus_sabaeus
ENSDARG00000069297	upf3a	83	56.728	ENSCGRG00001017387	Upf3a	88	54.617	Cricetulus_griseus_chok1gshd
ENSDARG00000069297	upf3a	83	56.728	ENSCGRG00000001468	Upf3a	88	54.617	Cricetulus_griseus_crigri
ENSDARG00000069297	upf3a	100	80.000	ENSCSEG00000005106	upf3a	99	80.000	Cynoglossus_semilaevis
ENSDARG00000069297	upf3a	84	46.535	ENSCVAG00000005030	upf3b	89	48.578	Cyprinodon_variegatus
ENSDARG00000069297	upf3a	99	79.167	ENSCVAG00000022333	upf3a	99	78.834	Cyprinodon_variegatus
ENSDARG00000069297	upf3a	79	62.842	ENSDNOG00000034391	UPF3A	90	59.296	Dasypus_novemcinctus
ENSDARG00000069297	upf3a	85	55.639	ENSETEG00000010110	UPF3A	95	51.634	Echinops_telfairi
ENSDARG00000069297	upf3a	93	55.385	ENSEASG00005021884	UPF3A	94	55.286	Equus_asinus_asinus
ENSDARG00000069297	upf3a	84	49.750	ENSEASG00005012919	UPF3B	62	73.913	Equus_asinus_asinus
ENSDARG00000069297	upf3a	93	54.526	ENSECAG00000017141	UPF3A	94	55.947	Equus_caballus
ENSDARG00000069297	upf3a	84	49.750	ENSECAG00000016947	UPF3B	62	67.143	Equus_caballus
ENSDARG00000069297	upf3a	100	82.151	ENSELUG00000011050	upf3a	100	82.151	Esox_lucius
ENSDARG00000069297	upf3a	92	55.748	ENSFCAG00000014602	UPF3A	96	55.889	Felis_catus
ENSDARG00000069297	upf3a	84	50.725	ENSFHEG00000017895	upf3b	88	51.574	Fundulus_heteroclitus
ENSDARG00000069297	upf3a	71	76.074	ENSGMOG00000019615	upf3a	100	75.375	Gadus_morhua
ENSDARG00000069297	upf3a	100	78.402	ENSGAFG00000021170	upf3a	99	78.402	Gambusia_affinis
ENSDARG00000069297	upf3a	84	46.929	ENSGAFG00000000829	upf3b	88	51.095	Gambusia_affinis
ENSDARG00000069297	upf3a	81	46.173	ENSGACG00000017435	upf3b	60	69.512	Gasterosteus_aculeatus
ENSDARG00000069297	upf3a	71	78.816	ENSGACG00000001972	upf3a	100	78.816	Gasterosteus_aculeatus
ENSDARG00000069297	upf3a	84	47.783	ENSGAGG00000001219	UPF3B	86	52.826	Gopherus_agassizii
ENSDARG00000069297	upf3a	99	53.734	ENSGGOG00000015428	UPF3A	99	53.498	Gorilla_gorilla
ENSDARG00000069297	upf3a	90	45.894	ENSGGOG00000041219	-	90	47.608	Gorilla_gorilla
ENSDARG00000069297	upf3a	90	45.894	ENSGGOG00000043074	-	85	47.754	Gorilla_gorilla
ENSDARG00000069297	upf3a	99	81.579	ENSHBUG00000011325	upf3a	99	80.994	Haplochromis_burtoni
ENSDARG00000069297	upf3a	75	57.185	ENSHGLG00000001544	UPF3A	80	57.185	Heterocephalus_glaber_female
ENSDARG00000069297	upf3a	75	57.185	ENSHGLG00100013244	UPF3A	80	57.185	Heterocephalus_glaber_male
ENSDARG00000069297	upf3a	99	72.467	ENSHCOG00000013985	upf3a	97	72.467	Hippocampus_comes
ENSDARG00000069297	upf3a	100	86.515	ENSIPUG00000023450	upf3a	100	86.515	Ictalurus_punctatus
ENSDARG00000069297	upf3a	89	49.312	ENSKMAG00000020300	upf3b	92	48.611	Kryptolebias_marmoratus
ENSDARG00000069297	upf3a	100	79.310	ENSKMAG00000004381	upf3a	99	79.310	Kryptolebias_marmoratus
ENSDARG00000069297	upf3a	99	75.877	ENSLBEG00000021570	upf3a	99	75.385	Labrus_bergylta
ENSDARG00000069297	upf3a	67	45.902	ENSLACG00000006645	UPF3A	74	87.500	Latimeria_chalumnae
ENSDARG00000069297	upf3a	99	76.840	ENSLOCG00000002665	upf3a	99	76.840	Lepisosteus_oculatus
ENSDARG00000069297	upf3a	99	52.282	ENSMFAG00000045016	UPF3A	99	51.660	Macaca_fascicularis
ENSDARG00000069297	upf3a	91	57.110	ENSMMUG00000007449	UPF3A	99	54.818	Macaca_mulatta
ENSDARG00000069297	upf3a	94	55.814	ENSMNEG00000036402	UPF3A	83	57.805	Macaca_nemestrina
ENSDARG00000069297	upf3a	94	55.581	ENSMLEG00000014726	UPF3A	93	57.317	Mandrillus_leucophaeus
ENSDARG00000069297	upf3a	100	76.409	ENSMAMG00000018364	upf3a	99	76.409	Mastacembelus_armatus
ENSDARG00000069297	upf3a	99	78.481	ENSMZEG00005021571	upf3a	98	78.647	Maylandia_zebra
ENSDARG00000069297	upf3a	86	66.169	ENSMGAG00000014837	UPF3A	99	66.005	Meleagris_gallopavo
ENSDARG00000069297	upf3a	99	77.754	ENSMMOG00000019751	upf3a	98	77.754	Mola_mola
ENSDARG00000069297	upf3a	90	65.721	ENSMODG00000003159	UPF3A	99	66.981	Monodelphis_domestica
ENSDARG00000069297	upf3a	81	58.266	MGP_CAROLIEiJ_G0030848	Upf3a	86	56.183	Mus_caroli
ENSDARG00000069297	upf3a	81	57.373	ENSMUSG00000038398	Upf3a	87	56.250	Mus_musculus
ENSDARG00000069297	upf3a	81	59.259	MGP_PahariEiJ_G0021311	Upf3a	87	57.031	Mus_pahari
ENSDARG00000069297	upf3a	81	57.105	MGP_SPRETEiJ_G0031958	Upf3a	87	55.208	Mus_spretus
ENSDARG00000069297	upf3a	94	53.879	ENSMPUG00000009139	UPF3A	95	54.447	Mustela_putorius_furo
ENSDARG00000069297	upf3a	83	60.506	ENSMLUG00000015905	UPF3A	93	60.506	Myotis_lucifugus
ENSDARG00000069297	upf3a	86	54.237	ENSNGAG00000019314	Upf3a	95	53.253	Nannospalax_galili
ENSDARG00000069297	upf3a	99	81.360	ENSNBRG00000000828	upf3a	98	81.538	Neolamprologus_brichardi
ENSDARG00000069297	upf3a	99	53.623	ENSNLEG00000007563	UPF3A	99	53.388	Nomascus_leucogenys
ENSDARG00000069297	upf3a	99	81.223	ENSONIG00000006817	upf3a	99	80.645	Oreochromis_niloticus
ENSDARG00000069297	upf3a	78	58.743	ENSOANG00000006985	-	96	58.556	Ornithorhynchus_anatinus
ENSDARG00000069297	upf3a	82	50.802	ENSOCUG00000008450	UPF3A	85	47.596	Oryctolagus_cuniculus
ENSDARG00000069297	upf3a	100	75.589	ENSORLG00000010911	upf3a	99	75.589	Oryzias_latipes
ENSDARG00000069297	upf3a	84	43.855	ENSORLG00000001026	upf3b	88	49.879	Oryzias_latipes
ENSDARG00000069297	upf3a	84	43.705	ENSORLG00020003758	upf3b	95	48.330	Oryzias_latipes_hni
ENSDARG00000069297	upf3a	100	75.810	ENSORLG00020014317	upf3a	99	75.810	Oryzias_latipes_hni
ENSDARG00000069297	upf3a	100	76.458	ENSORLG00015017339	upf3a	58	76.458	Oryzias_latipes_hsok
ENSDARG00000069297	upf3a	84	43.468	ENSORLG00015012954	upf3b	95	48.107	Oryzias_latipes_hsok
ENSDARG00000069297	upf3a	84	42.754	ENSOMEG00000014736	upf3b	95	47.427	Oryzias_melastigma
ENSDARG00000069297	upf3a	100	77.754	ENSOMEG00000014425	upf3a	99	77.754	Oryzias_melastigma
ENSDARG00000069297	upf3a	87	57.246	ENSOARG00000009004	UPF3A	84	57.702	Ovis_aries
ENSDARG00000069297	upf3a	97	53.433	ENSPPAG00000042267	UPF3A	95	53.219	Pan_paniscus
ENSDARG00000069297	upf3a	92	55.531	ENSPPRG00000025062	UPF3A	96	55.675	Panthera_pardus
ENSDARG00000069297	upf3a	90	42.446	ENSPTRG00000051640	-	91	44.844	Pan_troglodytes
ENSDARG00000069297	upf3a	90	46.377	ENSPTRG00000041187	-	90	46.172	Pan_troglodytes
ENSDARG00000069297	upf3a	99	52.738	ENSPTRG00000006073	UPF3A	99	52.881	Pan_troglodytes
ENSDARG00000069297	upf3a	92	56.854	ENSPANG00000004346	UPF3A	99	54.603	Papio_anubis
ENSDARG00000069297	upf3a	92	50.773	ENSPKIG00000019226	upf3b	92	62.759	Paramormyrops_kingsleyae
ENSDARG00000069297	upf3a	100	75.665	ENSPKIG00000004422	upf3a	100	75.820	Paramormyrops_kingsleyae
ENSDARG00000069297	upf3a	90	66.348	ENSPSIG00000007468	UPF3A	99	66.587	Pelodiscus_sinensis
ENSDARG00000069297	upf3a	99	76.471	ENSPMGG00000012696	upf3a	98	76.471	Periophthalmus_magnuspinnatus
ENSDARG00000069297	upf3a	81	58.424	ENSPEMG00000019968	-	87	58.108	Peromyscus_maniculatus_bairdii
ENSDARG00000069297	upf3a	83	66.094	ENSPCIG00000019590	-	88	69.712	Phascolarctos_cinereus
ENSDARG00000069297	upf3a	88	47.156	ENSPCIG00000028914	UPF3B	89	44.165	Phascolarctos_cinereus
ENSDARG00000069297	upf3a	100	78.186	ENSPFOG00000013222	upf3a	99	78.186	Poecilia_formosa
ENSDARG00000069297	upf3a	51	56.356	ENSPLAG00000005105	upf3b	88	50.488	Poecilia_latipinna
ENSDARG00000069297	upf3a	51	56.356	ENSPLAG00000019922	upf3b	88	50.488	Poecilia_latipinna
ENSDARG00000069297	upf3a	99	78.319	ENSPLAG00000011960	upf3a	99	78.492	Poecilia_latipinna
ENSDARG00000069297	upf3a	51	56.356	ENSPMEG00000023532	upf3b	88	50.488	Poecilia_mexicana
ENSDARG00000069297	upf3a	100	75.726	ENSPMEG00000000836	upf3a	99	75.726	Poecilia_mexicana
ENSDARG00000069297	upf3a	93	55.120	ENSPPYG00000005536	UPF3A	99	53.086	Pongo_abelii
ENSDARG00000069297	upf3a	84	53.155	ENSPCOG00000021960	UPF3B	51	73.780	Propithecus_coquereli
ENSDARG00000069297	upf3a	93	52.043	ENSPVAG00000005656	UPF3A	96	52.137	Pteropus_vampyrus
ENSDARG00000069297	upf3a	99	78.481	ENSPNYG00000011289	upf3a	98	78.647	Pundamilia_nyererei
ENSDARG00000069297	upf3a	84	45.098	ENSPNYG00000009846	upf3b	92	49.655	Pundamilia_nyererei
ENSDARG00000069297	upf3a	100	89.004	ENSPNAG00000019532	upf3a	100	89.004	Pygocentrus_nattereri
ENSDARG00000069297	upf3a	93	49.561	ENSPNAG00000021528	upf3b	65	65.000	Pygocentrus_nattereri
ENSDARG00000069297	upf3a	75	60.177	ENSRNOG00000017397	Upf3a	83	58.166	Rattus_norvegicus
ENSDARG00000069297	upf3a	92	56.770	ENSRBIG00000034007	UPF3A	92	56.770	Rhinopithecus_bieti
ENSDARG00000069297	upf3a	89	57.457	ENSRROG00000012212	UPF3A	84	57.457	Rhinopithecus_roxellana
ENSDARG00000069297	upf3a	84	53.846	ENSSBOG00000019740	UPF3B	78	74.233	Saimiri_boliviensis_boliviensis
ENSDARG00000069297	upf3a	81	53.018	ENSSBOG00000029989	UPF3A	84	53.133	Saimiri_boliviensis_boliviensis
ENSDARG00000069297	upf3a	87	66.912	ENSSHAG00000009895	UPF3A	97	67.971	Sarcophilus_harrisii
ENSDARG00000069297	upf3a	82	51.079	ENSSFOG00015005614	upf3b	92	46.756	Scleropages_formosus
ENSDARG00000069297	upf3a	100	71.150	ENSSFOG00015021851	upf3a	100	69.848	Scleropages_formosus
ENSDARG00000069297	upf3a	100	74.338	ENSSMAG00000003858	upf3a	99	75.356	Scophthalmus_maximus
ENSDARG00000069297	upf3a	84	51.707	ENSSMAG00000012913	upf3b	90	49.420	Scophthalmus_maximus
ENSDARG00000069297	upf3a	99	79.025	ENSSDUG00000009680	upf3a	99	78.497	Seriola_dumerili
ENSDARG00000069297	upf3a	50	65.126	ENSSDUG00000005682	upf3b	92	51.147	Seriola_dumerili
ENSDARG00000069297	upf3a	99	81.798	ENSSLDG00000009700	upf3a	99	81.210	Seriola_lalandi_dorsalis
ENSDARG00000069297	upf3a	85	49.043	ENSSLDG00000003130	upf3b	92	51.147	Seriola_lalandi_dorsalis
ENSDARG00000069297	upf3a	100	80.346	ENSSPAG00000007938	upf3a	99	80.346	Stegastes_partitus
ENSDARG00000069297	upf3a	56	64.394	ENSSPAG00000009989	upf3b	92	49.306	Stegastes_partitus
ENSDARG00000069297	upf3a	83	57.841	ENSSSCG00000024679	UPF3A	78	57.841	Sus_scrofa
ENSDARG00000069297	upf3a	84	69.289	ENSTGUG00000009493	UPF3A	99	69.289	Taeniopygia_guttata
ENSDARG00000069297	upf3a	99	77.412	ENSTRUG00000012730	upf3a	99	77.412	Takifugu_rubripes
ENSDARG00000069297	upf3a	85	73.028	ENSTNIG00000014973	upf3a	99	72.519	Tetraodon_nigroviridis
ENSDARG00000069297	upf3a	75	54.674	ENSTTRG00000015414	UPF3A	74	54.674	Tursiops_truncatus
ENSDARG00000069297	upf3a	83	55.412	ENSVPAG00000003525	UPF3A	95	56.041	Vicugna_pacos
ENSDARG00000069297	upf3a	84	48.111	ENSVVUG00000011594	UPF3B	77	73.333	Vulpes_vulpes
ENSDARG00000069297	upf3a	91	57.075	ENSXETG00000002572	upf3a	100	57.075	Xenopus_tropicalis
ENSDARG00000069297	upf3a	88	45.843	ENSXETG00000007440	upf3b	71	72.393	Xenopus_tropicalis
ENSDARG00000069297	upf3a	100	58.836	ENSXCOG00000018591	upf3a	99	65.880	Xiphophorus_couchianus
ENSDARG00000069297	upf3a	84	44.499	ENSXMAG00000013680	upf3b	88	51.095	Xiphophorus_maculatus
ENSDARG00000069297	upf3a	100	78.618	ENSXMAG00000013452	upf3a	99	78.618	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0045727	positive regulation of translation	21873635.	IBA	Process
GO:0051028	mRNA transport	-	IEA	Process