EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000069428 (Gene tree)
Gene ID: 558918
Gene Symbol: slbp2
Alias: zgc:158856
Full Name: stem-loop binding protein 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5017 bases
Position: chr21:30288570-30293586
Accession: ZDB-GENE-070112-1722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000091825	SLBP_RNA_bind	PF15247.6	4.1e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000101051	-	1427	-	ENSDARP00000091825	326 (aa)	-	A1L2F4
ENSDART00000142903	-	625	-	-	- (aa)	-	-
ENSDART00000137193	-	776	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000069428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000069428's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000069428	slbp2	68	59.009	ENSAPOG00000004873	slbp2	84	59.009	Acanthochromis_polyacanthus
ENSDARG00000069428	slbp2	96	50.784	ENSACIG00000007875	slbp2	95	50.784	Amphilophus_citrinellus
ENSDARG00000069428	slbp2	87	50.000	ENSAOCG00000016241	slbp2	88	50.000	Amphiprion_ocellaris
ENSDARG00000069428	slbp2	71	55.510	ENSAPEG00000008972	slbp2	68	76.136	Amphiprion_percula
ENSDARG00000069428	slbp2	80	54.093	ENSATEG00000009765	slbp2	92	54.093	Anabas_testudineus
ENSDARG00000069428	slbp2	87	52.027	ENSACLG00000000965	slbp2	84	52.027	Astatotilapia_calliptera
ENSDARG00000069428	slbp2	87	52.027	ENSACLG00000001252	slbp2	84	52.027	Astatotilapia_calliptera
ENSDARG00000069428	slbp2	99	63.253	ENSAMXG00000029210	slbp2	99	63.253	Astyanax_mexicanus
ENSDARG00000069428	slbp2	83	52.249	ENSCSEG00000006662	slbp2	79	52.249	Cynoglossus_semilaevis
ENSDARG00000069428	slbp2	92	49.007	ENSCVAG00000003498	slbp2	92	49.007	Cyprinodon_variegatus
ENSDARG00000069428	slbp2	95	60.625	ENSELUG00000021799	slbp2	95	60.625	Esox_lucius
ENSDARG00000069428	slbp2	82	55.357	ENSGMOG00000003044	slbp2	100	55.319	Gadus_morhua
ENSDARG00000069428	slbp2	87	55.986	ENSGAFG00000009788	slbp2	92	55.986	Gambusia_affinis
ENSDARG00000069428	slbp2	87	52.027	ENSHBUG00000019207	slbp2	84	52.027	Haplochromis_burtoni
ENSDARG00000069428	slbp2	94	49.068	ENSHCOG00000002192	slbp2	92	49.068	Hippocampus_comes
ENSDARG00000069428	slbp2	99	59.077	ENSIPUG00000024079	slbp2	99	58.788	Ictalurus_punctatus
ENSDARG00000069428	slbp2	87	51.195	ENSKMAG00000005391	-	84	51.195	Kryptolebias_marmoratus
ENSDARG00000069428	slbp2	87	52.365	ENSLBEG00000001991	slbp2	84	52.365	Labrus_bergylta
ENSDARG00000069428	slbp2	87	53.512	ENSMAMG00000022433	slbp2	84	53.512	Mastacembelus_armatus
ENSDARG00000069428	slbp2	87	52.027	ENSMZEG00005027825	slbp2	84	52.027	Maylandia_zebra
ENSDARG00000069428	slbp2	80	49.434	ENSMMOG00000016838	slbp2	91	49.434	Mola_mola
ENSDARG00000069428	slbp2	87	50.338	ENSMALG00000009687	slbp2	80	50.338	Monopterus_albus
ENSDARG00000069428	slbp2	60	60.500	ENSNBRG00000017849	slbp2	76	60.500	Neolamprologus_brichardi
ENSDARG00000069428	slbp2	97	48.094	ENSONIG00000017877	slbp2	99	48.406	Oreochromis_niloticus
ENSDARG00000069428	slbp2	86	51.701	ENSORLG00000025890	slbp2	99	47.977	Oryzias_latipes
ENSDARG00000069428	slbp2	86	51.027	ENSORLG00020003230	slbp2	99	47.384	Oryzias_latipes_hni
ENSDARG00000069428	slbp2	86	51.361	ENSORLG00015007694	slbp2	99	47.688	Oryzias_latipes_hsok
ENSDARG00000069428	slbp2	87	51.186	ENSOMEG00000017456	slbp2	84	51.186	Oryzias_melastigma
ENSDARG00000069428	slbp2	99	51.445	ENSPKIG00000008757	slbp2	100	51.445	Paramormyrops_kingsleyae
ENSDARG00000069428	slbp2	87	53.952	ENSPFOG00000021993	slbp2	94	53.952	Poecilia_formosa
ENSDARG00000069428	slbp2	87	53.952	ENSPLAG00000019220	slbp2	84	53.952	Poecilia_latipinna
ENSDARG00000069428	slbp2	87	53.952	ENSPLAG00000006548	-	85	53.952	Poecilia_latipinna
ENSDARG00000069428	slbp2	87	53.767	ENSPMEG00000024341	slbp2	84	53.767	Poecilia_mexicana
ENSDARG00000069428	slbp2	94	36.246	ENSPREG00000001384	-	91	36.246	Poecilia_reticulata
ENSDARG00000069428	slbp2	56	64.481	ENSPNYG00000022514	slbp2	70	70.297	Pundamilia_nyererei
ENSDARG00000069428	slbp2	99	64.242	ENSPNAG00000013685	slbp2	99	64.242	Pygocentrus_nattereri
ENSDARG00000069428	slbp2	58	55.779	ENSSFOG00015015666	-	89	55.779	Scleropages_formosus
ENSDARG00000069428	slbp2	99	49.708	ENSSMAG00000011121	slbp2	99	49.708	Scophthalmus_maximus
ENSDARG00000069428	slbp2	87	54.422	ENSSDUG00000023370	slbp2	84	54.422	Seriola_dumerili
ENSDARG00000069428	slbp2	62	59.113	ENSSLDG00000008723	slbp2	62	59.113	Seriola_lalandi_dorsalis
ENSDARG00000069428	slbp2	79	55.133	ENSSPAG00000011574	slbp2	93	55.133	Stegastes_partitus
ENSDARG00000069428	slbp2	87	49.488	ENSTRUG00000021937	slbp2	84	49.488	Takifugu_rubripes
ENSDARG00000069428	slbp2	51	49.701	ENSXETG00000033144	-	71	49.701	Xenopus_tropicalis
ENSDARG00000069428	slbp2	87	52.397	ENSXMAG00000007005	slbp2	84	53.082	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:0051028	mRNA transport	21873635.	IBA	Process
GO:0071204	histone pre-mRNA 3'end processing complex	21873635.	IBA	Component
GO:0071207	histone pre-mRNA stem-loop binding	21873635.	IBA	Function