EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000069624 (Gene tree)
Gene ID: 569841
Gene Symbol: mrps18c
Alias: si:ch211-85e10.6
Full Name: mitochondrial ribosomal protein S18C
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1487 bases
Position: chr21:19328847-19330333
Accession: ZDB-GENE-060503-609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000092236	Ribosomal_S18	PF01084.20	3.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000101462	-	720	-	ENSDARP00000092236	136 (aa)	-	Q1LVP7

Gene Model

Click here to download ENSDARG00000069624's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000069624's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000069624	mrps18c	78	68.868	ENSAPOG00000019045	mrps18c	81	68.868	Acanthochromis_polyacanthus
ENSDARG00000069624	mrps18c	65	73.034	ENSACIG00000020253	mrps18c	88	73.034	Amphilophus_citrinellus
ENSDARG00000069624	mrps18c	78	64.151	ENSAOCG00000014338	mrps18c	81	64.151	Amphiprion_ocellaris
ENSDARG00000069624	mrps18c	62	76.190	ENSAPEG00000023068	-	79	76.190	Amphiprion_percula
ENSDARG00000069624	mrps18c	68	70.968	ENSAPEG00000022956	mrps18c	72	70.968	Amphiprion_percula
ENSDARG00000069624	mrps18c	93	62.205	ENSATEG00000023417	mrps18c	98	62.205	Anabas_testudineus
ENSDARG00000069624	mrps18c	66	61.111	ENSAPLG00000012544	-	87	61.111	Anas_platyrhynchos
ENSDARG00000069624	mrps18c	65	77.528	ENSACLG00000010521	mrps18c	87	77.528	Astatotilapia_calliptera
ENSDARG00000069624	mrps18c	68	83.696	ENSAMXG00000012238	mrps18c	93	83.696	Astyanax_mexicanus
ENSDARG00000069624	mrps18c	84	58.772	ENSCPBG00000007783	-	70	58.772	Chrysemys_picta_bellii
ENSDARG00000069624	mrps18c	65	70.455	ENSCSEG00000000711	mrps18c	62	70.455	Cynoglossus_semilaevis
ENSDARG00000069624	mrps18c	78	64.151	ENSCVAG00000020169	mrps18c	81	64.151	Cyprinodon_variegatus
ENSDARG00000069624	mrps18c	100	54.412	ENSELUG00000024603	mrps18c	100	54.412	Esox_lucius
ENSDARG00000069624	mrps18c	91	62.097	ENSFHEG00000015550	mrps18c	89	62.097	Fundulus_heteroclitus
ENSDARG00000069624	mrps18c	91	62.097	ENSFHEG00000018752	-	94	62.097	Fundulus_heteroclitus
ENSDARG00000069624	mrps18c	78	58.491	ENSGALG00000023191	MRPS18C	74	58.491	Gallus_gallus
ENSDARG00000069624	mrps18c	91	62.903	ENSGAFG00000008048	mrps18c	77	62.903	Gambusia_affinis
ENSDARG00000069624	mrps18c	84	57.627	ENSGAGG00000015144	-	83	57.627	Gopherus_agassizii
ENSDARG00000069624	mrps18c	93	61.417	ENSHBUG00000002008	mrps18c	98	61.417	Haplochromis_burtoni
ENSDARG00000069624	mrps18c	99	60.448	ENSHCOG00000013161	mrps18c	98	60.448	Hippocampus_comes
ENSDARG00000069624	mrps18c	68	80.435	ENSIPUG00000003783	mrps18c	89	80.435	Ictalurus_punctatus
ENSDARG00000069624	mrps18c	91	65.323	ENSKMAG00000016467	mrps18c	94	65.323	Kryptolebias_marmoratus
ENSDARG00000069624	mrps18c	94	64.341	ENSLBEG00000021861	mrps18c	99	64.341	Labrus_bergylta
ENSDARG00000069624	mrps18c	94	64.341	ENSLBEG00000019174	mrps18c	99	64.341	Labrus_bergylta
ENSDARG00000069624	mrps18c	79	61.682	ENSLACG00000011243	mrps18c	84	61.682	Latimeria_chalumnae
ENSDARG00000069624	mrps18c	100	59.124	ENSLOCG00000012115	mrps18c	100	59.124	Lepisosteus_oculatus
ENSDARG00000069624	mrps18c	68	73.118	ENSMAMG00000012386	mrps18c	69	73.118	Mastacembelus_armatus
ENSDARG00000069624	mrps18c	93	61.417	ENSMZEG00005023278	mrps18c	98	61.417	Maylandia_zebra
ENSDARG00000069624	mrps18c	65	77.528	ENSMMOG00000011316	mrps18c	68	77.528	Mola_mola
ENSDARG00000069624	mrps18c	93	61.417	ENSNBRG00000006182	mrps18c	98	61.417	Neolamprologus_brichardi
ENSDARG00000069624	mrps18c	66	68.889	ENSMEUG00000010972	-	71	68.889	Notamacropus_eugenii
ENSDARG00000069624	mrps18c	99	59.259	ENSONIG00000012527	mrps18c	94	73.684	Oreochromis_niloticus
ENSDARG00000069624	mrps18c	79	66.355	ENSORLG00015006869	mrps18c	81	66.355	Oryzias_latipes_hsok
ENSDARG00000069624	mrps18c	65	71.910	ENSOMEG00000005009	mrps18c	86	71.910	Oryzias_melastigma
ENSDARG00000069624	mrps18c	100	61.314	ENSPKIG00000021736	mrps18c	100	61.314	Paramormyrops_kingsleyae
ENSDARG00000069624	mrps18c	65	74.157	ENSPMGG00000002991	mrps18c	90	74.157	Periophthalmus_magnuspinnatus
ENSDARG00000069624	mrps18c	91	60.484	ENSPFOG00000002351	mrps18c	77	60.484	Poecilia_formosa
ENSDARG00000069624	mrps18c	91	60.484	ENSPLAG00000015187	mrps18c	94	60.484	Poecilia_latipinna
ENSDARG00000069624	mrps18c	91	60.484	ENSPMEG00000014488	mrps18c	77	60.484	Poecilia_mexicana
ENSDARG00000069624	mrps18c	60	72.840	ENSPREG00000012593	mrps18c	83	72.840	Poecilia_reticulata
ENSDARG00000069624	mrps18c	93	60.630	ENSPNYG00000010654	mrps18c	98	60.630	Pundamilia_nyererei
ENSDARG00000069624	mrps18c	99	62.044	ENSPNAG00000009350	mrps18c	92	72.449	Pygocentrus_nattereri
ENSDARG00000069624	mrps18c	80	72.477	ENSSFOG00015019444	mrps18c	80	72.477	Scleropages_formosus
ENSDARG00000069624	mrps18c	95	64.122	ENSSDUG00000015676	mrps18c	98	64.122	Seriola_dumerili
ENSDARG00000069624	mrps18c	65	76.404	ENSSLDG00000002034	mrps18c	69	76.404	Seriola_lalandi_dorsalis
ENSDARG00000069624	mrps18c	79	55.357	ENSSPUG00000013990	-	82	55.357	Sphenodon_punctatus
ENSDARG00000069624	mrps18c	73	66.667	ENSSPAG00000008687	mrps18c	77	66.667	Stegastes_partitus
ENSDARG00000069624	mrps18c	78	65.094	ENSTRUG00000024403	mrps18c	82	65.094	Takifugu_rubripes
ENSDARG00000069624	mrps18c	78	68.868	ENSTNIG00000005674	mrps18c	82	68.868	Tetraodon_nigroviridis
ENSDARG00000069624	mrps18c	65	71.910	ENSXETG00000027597	mrps18c	68	71.910	Xenopus_tropicalis
ENSDARG00000069624	mrps18c	64	72.414	ENSXCOG00000016208	mrps18c	87	72.414	Xiphophorus_couchianus
ENSDARG00000069624	mrps18c	91	62.097	ENSXMAG00000012555	mrps18c	77	62.097	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005763	mitochondrial small ribosomal subunit	21873635.	IBA	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	IEA	Process
GO:0070181	small ribosomal subunit rRNA binding	21873635.	IBA	Function