EuRBPDB

Description

Ensembl ID: ENSDARG00000070019 (Gene tree)
Gene ID: 558760
Gene Symbol: taf15
Alias: fa11g05|wu:fa11g05|wu:fc02g02|zgc:158363
Full Name: TAF15 RNA polymerase II%2C TATA box binding protein (TBP)-associated factor
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 18877 bases
Position: chr15:1825172-1844048
Accession: ZDB-GENE-061215-102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000129847	zf-RanBP	PF00641.18	2.4e-09	1	1
ENSDARP00000093187	zf-RanBP	PF00641.18	6.7e-09	1	1
ENSDARP00000129847	RRM_1	PF00076.22	4e-12	1	1
ENSDARP00000093187	RRM_1	PF00076.22	2.4e-11	1	1
ENSDARP00000127709	RRM_1	PF00076.22	1.6e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000155779	-	890	-	-	- (aa)	-	-
ENSDART00000156283	-	404	-	-	- (aa)	-	-
ENSDART00000102410	-	2083	XM_005173352	ENSDARP00000093187	434 (aa)	XP_005173409	A1A5X7
ENSDART00000156718	-	913	-	ENSDARP00000127709	271 (aa)	-	X1WBW7
ENSDART00000154175	-	694	-	ENSDARP00000129551	231 (aa)	-	X1WH41
ENSDART00000154369	-	640	-	ENSDARP00000129847	213 (aa)	-	X1WHY2

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000070019	taf15	90	73.822	ENSACIG00000008575	taf15	92	72.251	Amphilophus_citrinellus
ENSDARG00000070019	taf15	92	83.249	ENSAMXG00000013126	taf15	75	65.161	Astyanax_mexicanus
ENSDARG00000070019	taf15	92	76.585	ENSGMOG00000016823	taf15	63	74.510	Gadus_morhua
ENSDARG00000070019	taf15	79	80.473	ENSORLG00000011382	taf15	53	80.000	Oryzias_latipes
ENSDARG00000070019	taf15	89	82.540	ENSPNAG00000001144	taf15	67	71.572	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function