EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000070045 (Gene tree)
Gene ID: 436835
Gene Symbol: celf4
Alias: zgc:92761
Full Name: CUGBP%2C Elav-like family member 4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 192666 bases
Position: chr21:12079878-12272543
Accession: ZDB-GENE-040718-300
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000075951	RRM_1	PF00076.22	1.4e-51	1	3
ENSDARP00000075951	RRM_1	PF00076.22	1.4e-51	2	3
ENSDARP00000075951	RRM_1	PF00076.22	1.4e-51	3	3
ENSDARP00000122295	RRM_1	PF00076.22	7.7e-35	1	2
ENSDARP00000122295	RRM_1	PF00076.22	7.7e-35	2	2
ENSDARP00000125716	RRM_1	PF00076.22	1.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000131538	-	1599	-	ENSDARP00000122295	404 (aa)	-	F1QUT6
ENSDART00000151297	-	566	-	ENSDARP00000125716	88 (aa)	-	I3IS52
ENSDART00000081510	-	2229	XM_009295191	ENSDARP00000075951	520 (aa)	XP_009293466	Q6DGV1

Gene Model

Click here to download ENSDARG00000070045's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000070045's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000070045	celf4	57	41.975	ENSDARG00000040732	elavl2	96	37.037
ENSDARG00000070045	celf4	56	44.444	ENSDARG00000101744	elavl1b	97	44.444
ENSDARG00000070045	celf4	89	70.149	ENSDARG00000101933	si:dkey-205h23.2	95	71.064
ENSDARG00000070045	celf4	96	62.379	ENSDARG00000090727	celf5b	100	65.882
ENSDARG00000070045	celf4	56	31.818	ENSDARG00000026476	tia1l	56	34.177
ENSDARG00000070045	celf4	100	61.905	ENSDARG00000002131	celf2	99	45.665
ENSDARG00000070045	celf4	53	41.860	ENSDARG00000014420	elavl3	76	41.860
ENSDARG00000070045	celf4	50	40.741	ENSDARG00000045639	elavl4	78	40.741
ENSDARG00000070045	celf4	100	43.675	ENSDARG00000005315	celf1	93	56.329
ENSDARG00000070045	celf4	100	62.619	ENSDARG00000034668	celf3a	100	66.194
ENSDARG00000070045	celf4	63	36.250	ENSDARG00000044574	rbms3	84	36.250
ENSDARG00000070045	celf4	53	33.333	ENSDARG00000056150	rbms2b	52	33.333
ENSDARG00000070045	celf4	62	38.961	ENSDARG00000074023	rbms1a	72	38.961
ENSDARG00000070045	celf4	59	37.500	ENSDARG00000038695	elavl1a	94	45.679
ENSDARG00000070045	celf4	100	61.707	ENSDARG00000006983	celf3b	100	65.021
ENSDARG00000070045	celf4	55	87.500	ENSDARG00000098702	zgc:165603	58	87.179
ENSDARG00000070045	celf4	99	67.961	ENSDARG00000071375	celf5a	88	71.107
ENSDARG00000070045	celf4	54	32.099	ENSDARG00000044179	rbms2a	56	32.099

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000070045	celf4	100	75.184	ENSG00000101489	CELF4	100	92.537	Homo_sapiens
ENSDARG00000070045	celf4	100	96.296	ENSAPOG00000002964	celf4	100	94.667	Acanthochromis_polyacanthus
ENSDARG00000070045	celf4	100	72.165	ENSAMEG00000017059	CELF4	99	75.359	Ailuropoda_melanoleuca
ENSDARG00000070045	celf4	100	86.957	ENSACIG00000018097	celf4	100	76.190	Amphilophus_citrinellus
ENSDARG00000070045	celf4	100	96.296	ENSAOCG00000020590	celf4	100	94.667	Amphiprion_ocellaris
ENSDARG00000070045	celf4	73	61.130	ENSAOCG00000019919	-	80	61.333	Amphiprion_ocellaris
ENSDARG00000070045	celf4	100	86.957	ENSAPEG00000002940	celf4	99	78.178	Amphiprion_percula
ENSDARG00000070045	celf4	100	89.130	ENSATEG00000023731	celf4	100	78.558	Anabas_testudineus
ENSDARG00000070045	celf4	95	68.433	ENSAPLG00000007830	-	100	68.433	Anas_platyrhynchos
ENSDARG00000070045	celf4	69	74.648	ENSACAG00000012428	CELF4	92	76.580	Anolis_carolinensis
ENSDARG00000070045	celf4	100	74.908	ENSANAG00000029499	CELF4	99	75.275	Aotus_nancymaae
ENSDARG00000070045	celf4	100	95.802	ENSACLG00000011828	celf4	100	94.476	Astatotilapia_calliptera
ENSDARG00000070045	celf4	100	98.765	ENSAMXG00000007935	celf4	100	96.161	Astyanax_mexicanus
ENSDARG00000070045	celf4	86	92.683	ENSBTAG00000004940	CELF4	99	92.683	Bos_taurus
ENSDARG00000070045	celf4	100	74.862	ENSCJAG00000021135	CELF4	99	75.229	Callithrix_jacchus
ENSDARG00000070045	celf4	86	92.683	ENSCHIG00000007169	CELF4	99	92.683	Capra_hircus
ENSDARG00000070045	celf4	100	74.347	ENSTSYG00000000816	CELF4	85	74.822	Carlito_syrichta
ENSDARG00000070045	celf4	100	79.475	ENSCPOG00000035956	CELF4	99	75.000	Cavia_porcellus
ENSDARG00000070045	celf4	100	74.908	ENSCCAG00000028373	CELF4	99	75.275	Cebus_capucinus
ENSDARG00000070045	celf4	100	74.862	ENSCATG00000045293	CELF4	99	75.229	Cercocebus_atys
ENSDARG00000070045	celf4	100	79.475	ENSCLAG00000008344	CELF4	99	79.259	Chinchilla_lanigera
ENSDARG00000070045	celf4	96	80.916	ENSCSAG00000017933	CELF4	100	81.425	Chlorocebus_sabaeus
ENSDARG00000070045	celf4	96	75.888	ENSCPBG00000005237	CELF4	93	76.396	Chrysemys_picta_bellii
ENSDARG00000070045	celf4	100	74.908	ENSCANG00000036735	CELF4	99	75.275	Colobus_angolensis_palliatus
ENSDARG00000070045	celf4	100	72.639	ENSCGRG00001018085	Celf4	89	73.188	Cricetulus_griseus_chok1gshd
ENSDARG00000070045	celf4	100	95.556	ENSCSEG00000007074	celf4	99	100.000	Cynoglossus_semilaevis
ENSDARG00000070045	celf4	100	84.043	ENSCVAG00000017617	celf4	99	77.694	Cyprinodon_variegatus
ENSDARG00000070045	celf4	99	79.012	ENSDNOG00000032492	CELF4	99	79.506	Dasypus_novemcinctus
ENSDARG00000070045	celf4	100	79.475	ENSDORG00000007169	Celf4	99	79.259	Dipodomys_ordii
ENSDARG00000070045	celf4	100	72.165	ENSETEG00000007432	-	53	93.750	Echinops_telfairi
ENSDARG00000070045	celf4	100	76.493	ENSEASG00005016534	CELF4	99	76.866	Equus_asinus_asinus
ENSDARG00000070045	celf4	100	74.862	ENSECAG00000008810	CELF4	79	96.552	Equus_caballus
ENSDARG00000070045	celf4	100	61.290	ENSEEUG00000003763	CELF4	99	61.875	Erinaceus_europaeus
ENSDARG00000070045	celf4	100	76.306	ENSFCAG00000045234	CELF4	99	76.679	Felis_catus
ENSDARG00000070045	celf4	96	80.916	ENSFALG00000009188	CELF4	98	81.679	Ficedula_albicollis
ENSDARG00000070045	celf4	100	79.475	ENSFDAG00000010287	CELF4	99	74.444	Fukomys_damarensis
ENSDARG00000070045	celf4	100	85.106	ENSFHEG00000003431	celf4	99	75.236	Fundulus_heteroclitus
ENSDARG00000070045	celf4	81	92.683	ENSGMOG00000011747	-	75	92.683	Gadus_morhua
ENSDARG00000070045	celf4	100	84.783	ENSGMOG00000008703	celf4	100	76.616	Gadus_morhua
ENSDARG00000070045	celf4	100	96.287	ENSGAFG00000021515	celf4	94	95.434	Gambusia_affinis
ENSDARG00000070045	celf4	100	91.400	ENSGACG00000008752	celf4	100	87.666	Gasterosteus_aculeatus
ENSDARG00000070045	celf4	85	73.714	ENSGAGG00000023014	-	98	74.571	Gopherus_agassizii
ENSDARG00000070045	celf4	76	86.111	ENSGAGG00000017672	-	88	90.217	Gopherus_agassizii
ENSDARG00000070045	celf4	100	74.908	ENSGGOG00000013920	CELF4	99	75.275	Gorilla_gorilla
ENSDARG00000070045	celf4	100	96.287	ENSHBUG00000021618	celf4	100	94.656	Haplochromis_burtoni
ENSDARG00000070045	celf4	100	75.370	ENSHGLG00000003130	CELF4	99	75.556	Heterocephalus_glaber_female
ENSDARG00000070045	celf4	100	78.759	ENSHGLG00100006394	CELF4	99	78.704	Heterocephalus_glaber_male
ENSDARG00000070045	celf4	100	87.640	ENSHCOG00000012195	celf4	99	78.244	Hippocampus_comes
ENSDARG00000070045	celf4	100	86.173	ENSIPUG00000010810	celf4	91	86.180	Ictalurus_punctatus
ENSDARG00000070045	celf4	100	78.520	ENSJJAG00000016892	Celf4	99	78.519	Jaculus_jaculus
ENSDARG00000070045	celf4	100	95.802	ENSKMAG00000019602	celf4	100	94.095	Kryptolebias_marmoratus
ENSDARG00000070045	celf4	100	86.957	ENSLBEG00000000940	celf4	99	78.178	Labrus_bergylta
ENSDARG00000070045	celf4	98	81.141	ENSLOCG00000004792	celf4	98	81.886	Lepisosteus_oculatus
ENSDARG00000070045	celf4	100	79.475	ENSLAFG00000021352	CELF4	99	79.044	Loxodonta_africana
ENSDARG00000070045	celf4	100	74.908	ENSMFAG00000042983	CELF4	99	75.275	Macaca_fascicularis
ENSDARG00000070045	celf4	100	75.184	ENSMMUG00000006866	CELF4	99	74.816	Macaca_mulatta
ENSDARG00000070045	celf4	100	76.306	ENSMNEG00000033449	CELF4	99	76.679	Macaca_nemestrina
ENSDARG00000070045	celf4	100	72.165	ENSMLEG00000028543	CELF4	99	74.291	Mandrillus_leucophaeus
ENSDARG00000070045	celf4	100	88.043	ENSMAMG00000018573	celf4	99	78.368	Mastacembelus_armatus
ENSDARG00000070045	celf4	100	86.957	ENSMZEG00005026879	celf4	99	76.000	Maylandia_zebra
ENSDARG00000070045	celf4	86	61.538	ENSMGAG00000017029	CELF4	100	61.605	Meleagris_gallopavo
ENSDARG00000070045	celf4	100	74.679	ENSMICG00000006984	CELF4	99	75.046	Microcebus_murinus
ENSDARG00000070045	celf4	100	78.998	ENSMOCG00000011985	Celf4	99	78.676	Microtus_ochrogaster
ENSDARG00000070045	celf4	100	85.870	ENSMMOG00000012281	celf4	100	78.178	Mola_mola
ENSDARG00000070045	celf4	85	71.018	ENSMODG00000000306	CELF4	91	71.279	Monodelphis_domestica
ENSDARG00000070045	celf4	100	96.296	ENSMALG00000001696	celf4	100	94.667	Monopterus_albus
ENSDARG00000070045	celf4	100	79.236	MGP_CAROLIEiJ_G0022058	Celf4	99	78.860	Mus_caroli
ENSDARG00000070045	celf4	100	80.779	ENSMUSG00000024268	Celf4	99	80.224	Mus_musculus
ENSDARG00000070045	celf4	100	79.236	MGP_PahariEiJ_G0018792	Celf4	99	78.860	Mus_pahari
ENSDARG00000070045	celf4	100	79.236	MGP_SPRETEiJ_G0022969	Celf4	99	78.860	Mus_spretus
ENSDARG00000070045	celf4	100	71.262	ENSMPUG00000001027	CELF4	100	73.113	Mustela_putorius_furo
ENSDARG00000070045	celf4	100	79.268	ENSMLUG00000001755	CELF4	100	79.756	Myotis_lucifugus
ENSDARG00000070045	celf4	100	79.475	ENSNGAG00000000761	Celf4	99	79.044	Nannospalax_galili
ENSDARG00000070045	celf4	100	86.957	ENSNBRG00000018194	celf4	99	76.000	Neolamprologus_brichardi
ENSDARG00000070045	celf4	80	75.000	ENSMEUG00000007202	-	100	71.503	Notamacropus_eugenii
ENSDARG00000070045	celf4	100	73.118	ENSOPRG00000014415	CELF4	89	80.573	Ochotona_princeps
ENSDARG00000070045	celf4	100	79.475	ENSODEG00000018464	CELF4	99	79.044	Octodon_degus
ENSDARG00000070045	celf4	100	96.535	ENSONIG00000019463	celf4	100	94.847	Oreochromis_niloticus
ENSDARG00000070045	celf4	100	73.118	ENSOCUG00000024790	CELF4	81	78.769	Oryctolagus_cuniculus
ENSDARG00000070045	celf4	100	96.535	ENSORLG00000008913	celf4	100	95.038	Oryzias_latipes
ENSDARG00000070045	celf4	100	96.535	ENSORLG00020008454	celf4	100	95.038	Oryzias_latipes_hni
ENSDARG00000070045	celf4	100	96.535	ENSORLG00015004115	celf4	100	95.038	Oryzias_latipes_hsok
ENSDARG00000070045	celf4	100	96.296	ENSOMEG00000002391	celf4	100	94.857	Oryzias_melastigma
ENSDARG00000070045	celf4	100	79.529	ENSOGAG00000010018	CELF4	100	81.882	Otolemur_garnettii
ENSDARG00000070045	celf4	85	78.063	ENSOARG00000005276	CELF4	100	78.632	Ovis_aries
ENSDARG00000070045	celf4	100	72.165	ENSPPAG00000020644	CELF4	99	77.530	Pan_paniscus
ENSDARG00000070045	celf4	100	74.908	ENSPPRG00000007683	CELF4	99	75.275	Panthera_pardus
ENSDARG00000070045	celf4	100	74.908	ENSPTRG00000009982	CELF4	99	75.275	Pan_troglodytes
ENSDARG00000070045	celf4	100	74.908	ENSPANG00000006365	CELF4	99	75.275	Papio_anubis
ENSDARG00000070045	celf4	100	92.135	ENSPKIG00000017421	celf4	100	89.101	Paramormyrops_kingsleyae
ENSDARG00000070045	celf4	96	80.916	ENSPSIG00000015538	CELF4	98	81.679	Pelodiscus_sinensis
ENSDARG00000070045	celf4	100	79.236	ENSPEMG00000019299	Celf4	99	78.860	Peromyscus_maniculatus_bairdii
ENSDARG00000070045	celf4	100	88.043	ENSPLAG00000012151	celf4	88	90.730	Poecilia_latipinna
ENSDARG00000070045	celf4	100	88.043	ENSPMEG00000015313	celf4	97	100.000	Poecilia_mexicana
ENSDARG00000070045	celf4	100	95.802	ENSPREG00000021231	celf4	100	94.667	Poecilia_reticulata
ENSDARG00000070045	celf4	100	72.165	ENSPCAG00000000126	CELF4	81	77.320	Procavia_capensis
ENSDARG00000070045	celf4	100	74.908	ENSPVAG00000009204	CELF4	99	75.275	Pteropus_vampyrus
ENSDARG00000070045	celf4	100	86.957	ENSPNYG00000004131	celf4	99	76.000	Pundamilia_nyererei
ENSDARG00000070045	celf4	100	98.765	ENSPNAG00000006426	celf4	100	95.777	Pygocentrus_nattereri
ENSDARG00000070045	celf4	94	73.385	ENSRNOG00000014503	Celf4	100	73.902	Rattus_norvegicus
ENSDARG00000070045	celf4	100	76.306	ENSRBIG00000035924	CELF4	99	76.679	Rhinopithecus_bieti
ENSDARG00000070045	celf4	100	74.908	ENSRROG00000014839	CELF4	99	75.275	Rhinopithecus_roxellana
ENSDARG00000070045	celf4	100	74.347	ENSSBOG00000030001	CELF4	99	74.542	Saimiri_boliviensis_boliviensis
ENSDARG00000070045	celf4	89	75.890	ENSSHAG00000009193	CELF4	96	76.177	Sarcophilus_harrisii
ENSDARG00000070045	celf4	100	85.468	ENSSFOG00015010874	celf4	100	85.878	Scleropages_formosus
ENSDARG00000070045	celf4	100	93.510	ENSSMAG00000009331	celf4	100	100.000	Scophthalmus_maximus
ENSDARG00000070045	celf4	100	88.043	ENSSLDG00000018548	celf4	100	73.245	Seriola_lalandi_dorsalis
ENSDARG00000070045	celf4	100	86.957	ENSSPAG00000018307	celf4	100	75.712	Stegastes_partitus
ENSDARG00000070045	celf4	100	76.306	ENSSSCG00000003748	CELF4	99	92.857	Sus_scrofa
ENSDARG00000070045	celf4	96	80.916	ENSTGUG00000001649	CELF4	98	81.679	Taeniopygia_guttata
ENSDARG00000070045	celf4	100	86.957	ENSTRUG00000015481	celf4	100	76.091	Takifugu_rubripes
ENSDARG00000070045	celf4	99	77.751	ENSTNIG00000010679	celf4	99	76.407	Tetraodon_nigroviridis
ENSDARG00000070045	celf4	91	86.207	ENSTBEG00000010647	CELF4	87	86.207	Tupaia_belangeri
ENSDARG00000070045	celf4	100	74.725	ENSTTRG00000016826	CELF4	99	75.092	Tursiops_truncatus
ENSDARG00000070045	celf4	91	77.225	ENSUAMG00000005506	CELF4	83	77.749	Ursus_americanus
ENSDARG00000070045	celf4	100	76.504	ENSVVUG00000027721	CELF4	99	76.880	Vulpes_vulpes
ENSDARG00000070045	celf4	99	78.325	ENSXETG00000020486	celf4	99	79.310	Xenopus_tropicalis
ENSDARG00000070045	celf4	100	81.281	ENSXCOG00000017592	celf4	97	79.783	Xiphophorus_couchianus
ENSDARG00000070045	celf4	100	95.556	ENSXMAG00000018178	celf4	100	94.837	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006376	mRNA splice site selection	21873635.	IBA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	-	ISS	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component