EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000070048 (Gene tree)
Gene ID: 100126026
Gene Symbol: zgc:173548
Alias: im:7138561
Full Name: zgc:173548
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 3010 bases
Position: chr11:6986589-6989598
Accession: ZDB-GENE-070928-39
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000142475	zf-C2H2	PF00096.26	2.2e-11	1	3
ENSDARP00000142475	zf-C2H2	PF00096.26	2.2e-11	2	3
ENSDARP00000142475	zf-C2H2	PF00096.26	2.2e-11	3	3
ENSDARP00000093270	zf-C2H2	PF00096.26	3.4e-11	1	3
ENSDARP00000093270	zf-C2H2	PF00096.26	3.4e-11	2	3
ENSDARP00000093270	zf-C2H2	PF00096.26	3.4e-11	3	3
ENSDARP00000142475	zf-met	PF12874.7	5.9e-09	1	1
ENSDARP00000093270	zf-met	PF12874.7	8.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000172896	-	511	-	ENSDARP00000142627	58 (aa)	-	A0A140LH95
ENSDART00000173242	-	899	-	ENSDARP00000142475	258 (aa)	-	A0A140LGU6
ENSDART00000102493	-	1295	-	ENSDARP00000093270	282 (aa)	-	F1R241

Gene Model

Click here to download ENSDARG00000070048's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000070048's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000070048	zgc:173548	95	39.535	ENSDARG00000089230	si:ch211-253b8.2	96	39.535

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000070048	zgc:173548	93	32.588	ENSPNAG00000011679	-	95	31.847	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process
GO:0046872	metal ion binding	-	IEA	Function