EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000070431 (Gene tree)
Gene ID: 450021
Gene Symbol: fip1l1b
Alias: fip1l1|wu:fd36f11|zgc:103421
Full Name: FIP1 like 1b (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 21972 bases
Position: chr1:14382584-14404555
Accession: ZDB-GENE-041010-138
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000094123	Fip1	PF05182.13	7.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000103346	-	3192	XM_009306690	ENSDARP00000094123	570 (aa)	XP_009304965	A7MCF0

Gene Model

Click here to download ENSDARG00000070431's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000070431's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000070431	fip1l1b	100	38.475	ENSDARG00000043328	fip1l1a	100	39.966

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000070431	fip1l1b	71	88.660	ENSACIG00000001454	fip1l1b	96	83.505	Amphilophus_citrinellus
ENSDARG00000070431	fip1l1b	100	71.157	ENSAOCG00000021043	fip1l1b	100	70.984	Amphiprion_ocellaris
ENSDARG00000070431	fip1l1b	100	71.157	ENSAPEG00000022229	fip1l1b	100	70.984	Amphiprion_percula
ENSDARG00000070431	fip1l1b	100	71.773	ENSATEG00000021757	fip1l1b	100	70.862	Anabas_testudineus
ENSDARG00000070431	fip1l1b	81	55.426	ENSAPLG00000003042	-	90	54.023	Anas_platyrhynchos
ENSDARG00000070431	fip1l1b	72	59.799	ENSACAG00000010556	-	77	53.247	Anolis_carolinensis
ENSDARG00000070431	fip1l1b	100	70.396	ENSACLG00000010418	fip1l1b	100	71.034	Astatotilapia_calliptera
ENSDARG00000070431	fip1l1b	100	72.852	ENSAMXG00000011126	fip1l1b	89	75.945	Astyanax_mexicanus
ENSDARG00000070431	fip1l1b	53	38.361	ENSAMXG00000031045	fip1l1a	61	43.644	Astyanax_mexicanus
ENSDARG00000070431	fip1l1b	81	54.298	ENSCAPG00000009569	-	87	50.617	Cavia_aperea
ENSDARG00000070431	fip1l1b	53	49.839	ENSCPBG00000014849	-	85	41.843	Chrysemys_picta_bellii
ENSDARG00000070431	fip1l1b	96	59.868	ENSCPBG00000025019	-	97	55.912	Chrysemys_picta_bellii
ENSDARG00000070431	fip1l1b	99	54.770	ENSCGRG00001018568	Fip1l1	99	56.923	Cricetulus_griseus_chok1gshd
ENSDARG00000070431	fip1l1b	99	54.770	ENSCGRG00000000208	Fip1l1	99	56.923	Cricetulus_griseus_crigri
ENSDARG00000070431	fip1l1b	100	69.416	ENSCSEG00000006583	fip1l1b	100	68.151	Cynoglossus_semilaevis
ENSDARG00000070431	fip1l1b	100	66.321	ENSCVAG00000023435	fip1l1b	100	65.976	Cyprinodon_variegatus
ENSDARG00000070431	fip1l1b	63	62.130	ENSETEG00000018271	-	89	53.101	Echinops_telfairi
ENSDARG00000070431	fip1l1b	90	59.091	ENSEASG00005019566	-	99	54.281	Equus_asinus_asinus
ENSDARG00000070431	fip1l1b	99	45.690	ENSELUG00000004607	fip1l1a	99	47.232	Esox_lucius
ENSDARG00000070431	fip1l1b	66	76.147	ENSELUG00000001280	fip1l1b	76	75.799	Esox_lucius
ENSDARG00000070431	fip1l1b	100	66.724	ENSFHEG00000003843	fip1l1b	100	66.209	Fundulus_heteroclitus
ENSDARG00000070431	fip1l1b	100	58.744	ENSGMOG00000004913	fip1l1b	100	59.014	Gadus_morhua
ENSDARG00000070431	fip1l1b	81	59.792	ENSGALG00000013943	-	99	55.556	Gallus_gallus
ENSDARG00000070431	fip1l1b	100	67.581	ENSGAFG00000008253	fip1l1b	100	67.067	Gambusia_affinis
ENSDARG00000070431	fip1l1b	59	58.967	ENSGACG00000015946	fip1l1b	100	59.180	Gasterosteus_aculeatus
ENSDARG00000070431	fip1l1b	96	59.868	ENSGAGG00000009763	-	97	56.081	Gopherus_agassizii
ENSDARG00000070431	fip1l1b	59	45.376	ENSGAGG00000017677	-	94	44.828	Gopherus_agassizii
ENSDARG00000070431	fip1l1b	100	70.396	ENSHBUG00000013978	fip1l1b	100	71.034	Haplochromis_burtoni
ENSDARG00000070431	fip1l1b	99	67.406	ENSHCOG00000015834	fip1l1b	99	68.430	Hippocampus_comes
ENSDARG00000070431	fip1l1b	100	62.010	ENSIPUG00000022454	fip1l1b	98	71.340	Ictalurus_punctatus
ENSDARG00000070431	fip1l1b	100	65.976	ENSKMAG00000021938	fip1l1b	100	66.495	Kryptolebias_marmoratus
ENSDARG00000070431	fip1l1b	100	69.896	ENSLBEG00000028819	fip1l1b	100	70.017	Labrus_bergylta
ENSDARG00000070431	fip1l1b	96	55.516	ENSLACG00000011991	fip1l1a	96	57.042	Latimeria_chalumnae
ENSDARG00000070431	fip1l1b	99	62.689	ENSLOCG00000014127	fip1l1b	99	61.616	Lepisosteus_oculatus
ENSDARG00000070431	fip1l1b	100	67.241	ENSMAMG00000004535	fip1l1b	100	67.241	Mastacembelus_armatus
ENSDARG00000070431	fip1l1b	100	70.396	ENSMZEG00005023828	fip1l1b	100	71.034	Maylandia_zebra
ENSDARG00000070431	fip1l1b	99	53.152	ENSMAUG00000010526	Fip1l1	99	53.675	Mesocricetus_auratus
ENSDARG00000070431	fip1l1b	99	55.041	ENSMOCG00000008020	Fip1l1	99	56.410	Microtus_ochrogaster
ENSDARG00000070431	fip1l1b	84	62.903	ENSMMOG00000008262	fip1l1b	92	96.154	Mola_mola
ENSDARG00000070431	fip1l1b	100	58.406	ENSMALG00000000838	fip1l1b	100	56.401	Monopterus_albus
ENSDARG00000070431	fip1l1b	100	70.396	ENSNBRG00000017832	fip1l1b	100	71.034	Neolamprologus_brichardi
ENSDARG00000070431	fip1l1b	100	69.880	ENSONIG00000008785	fip1l1b	100	70.517	Oreochromis_niloticus
ENSDARG00000070431	fip1l1b	81	51.229	ENSOANG00000003384	-	90	49.907	Ornithorhynchus_anatinus
ENSDARG00000070431	fip1l1b	100	67.876	ENSORLG00000004397	fip1l1b	100	66.321	Oryzias_latipes
ENSDARG00000070431	fip1l1b	100	67.703	ENSORLG00020008716	fip1l1b	100	66.149	Oryzias_latipes_hni
ENSDARG00000070431	fip1l1b	100	67.358	ENSORLG00015006736	fip1l1b	100	65.803	Oryzias_latipes_hsok
ENSDARG00000070431	fip1l1b	100	54.059	ENSOMEG00000015730	fip1l1b	100	50.492	Oryzias_melastigma
ENSDARG00000070431	fip1l1b	100	59.408	ENSPKIG00000003396	fip1l1b	100	60.627	Paramormyrops_kingsleyae
ENSDARG00000070431	fip1l1b	100	63.021	ENSPMGG00000017028	fip1l1b	100	63.021	Periophthalmus_magnuspinnatus
ENSDARG00000070431	fip1l1b	99	54.934	ENSPEMG00000002025	Fip1l1	99	57.436	Peromyscus_maniculatus_bairdii
ENSDARG00000070431	fip1l1b	100	65.464	ENSPFOG00000014745	fip1l1b	100	68.041	Poecilia_formosa
ENSDARG00000070431	fip1l1b	100	65.009	ENSPLAG00000010954	fip1l1b	100	67.410	Poecilia_latipinna
ENSDARG00000070431	fip1l1b	100	64.777	ENSPMEG00000019187	fip1l1b	100	67.526	Poecilia_mexicana
ENSDARG00000070431	fip1l1b	65	92.593	ENSPREG00000012535	fip1l1b	75	92.593	Poecilia_reticulata
ENSDARG00000070431	fip1l1b	58	72.107	ENSPNYG00000015976	fip1l1b	99	71.320	Pundamilia_nyererei
ENSDARG00000070431	fip1l1b	58	74.405	ENSPNAG00000015341	fip1l1b	70	73.193	Pygocentrus_nattereri
ENSDARG00000070431	fip1l1b	54	42.357	ENSPNAG00000007456	-	52	42.994	Pygocentrus_nattereri
ENSDARG00000070431	fip1l1b	92	53.775	ENSSFOG00015017653	fip1l1b	96	50.854	Scleropages_formosus
ENSDARG00000070431	fip1l1b	53	45.603	ENSSFOG00015010948	-	55	52.727	Scleropages_formosus
ENSDARG00000070431	fip1l1b	100	69.430	ENSSMAG00000013444	fip1l1b	100	69.430	Scophthalmus_maximus
ENSDARG00000070431	fip1l1b	100	70.172	ENSSDUG00000004117	fip1l1b	100	70.690	Seriola_dumerili
ENSDARG00000070431	fip1l1b	100	70.761	ENSSLDG00000024099	fip1l1b	100	71.799	Seriola_lalandi_dorsalis
ENSDARG00000070431	fip1l1b	69	59.091	ENSSARG00000001973	-	73	60.101	Sorex_araneus
ENSDARG00000070431	fip1l1b	100	71.330	ENSSPAG00000017564	fip1l1b	100	71.157	Stegastes_partitus
ENSDARG00000070431	fip1l1b	100	64.533	ENSTRUG00000001545	fip1l1b	100	65.278	Takifugu_rubripes
ENSDARG00000070431	fip1l1b	100	58.900	ENSTNIG00000004104	fip1l1b	100	59.967	Tetraodon_nigroviridis
ENSDARG00000070431	fip1l1b	69	59.091	ENSVPAG00000011574	-	76	60.101	Vicugna_pacos
ENSDARG00000070431	fip1l1b	81	57.715	ENSXETG00000011679	fip1l1	80	51.048	Xenopus_tropicalis
ENSDARG00000070431	fip1l1b	100	55.382	ENSXCOG00000013656	fip1l1b	100	53.103	Xiphophorus_couchianus
ENSDARG00000070431	fip1l1b	100	67.753	ENSXMAG00000017620	fip1l1b	100	67.238	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	IEA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	-	IEA	Process