EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000070471 (Gene tree)
Gene ID: 336141
Gene Symbol: tarbp2
Alias: fj51e12|wu:fj51e12|zgc:63778
Full Name: TAR (HIV) RNA binding protein 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 9841 bases
Position: chr6:46725540-46735380
Accession: ZDB-GENE-030131-8085
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000094231	dsrm	PF00035.26	3.9e-36	1	2
ENSDARP00000094231	dsrm	PF00035.26	3.9e-36	2	2
ENSDARP00000094231	DND1_DSRM	PF14709.7	1.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000103455	-	1964	-	ENSDARP00000094231	346 (aa)	-	F1QP01

Gene Model

Click here to download ENSDARG00000070471's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000070471's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000070471	tarbp2	91	42.587	ENSDARG00000076718	prkra	96	42.540

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000070471	tarbp2	100	65.574	ENSG00000139546	TARBP2	100	66.667	Homo_sapiens
ENSDARG00000070471	tarbp2	100	80.980	ENSAPOG00000019892	tarbp2	100	81.897	Acanthochromis_polyacanthus
ENSDARG00000070471	tarbp2	100	65.847	ENSAMEG00000012601	TARBP2	100	65.574	Ailuropoda_melanoleuca
ENSDARG00000070471	tarbp2	100	83.237	ENSACIG00000016780	tarbp2	100	83.237	Amphilophus_citrinellus
ENSDARG00000070471	tarbp2	100	80.980	ENSAOCG00000005201	tarbp2	100	81.897	Amphiprion_ocellaris
ENSDARG00000070471	tarbp2	100	80.980	ENSAPEG00000008376	tarbp2	100	81.897	Amphiprion_percula
ENSDARG00000070471	tarbp2	100	80.403	ENSATEG00000025012	tarbp2	100	81.322	Anabas_testudineus
ENSDARG00000070471	tarbp2	97	70.704	ENSACAG00000001100	TARBP2	97	70.704	Anolis_carolinensis
ENSDARG00000070471	tarbp2	100	65.847	ENSANAG00000034453	TARBP2	94	75.676	Aotus_nancymaae
ENSDARG00000070471	tarbp2	95	82.779	ENSACLG00000018569	tarbp2	95	82.779	Astatotilapia_calliptera
ENSDARG00000070471	tarbp2	100	88.793	ENSAMXG00000016665	tarbp2	100	88.793	Astyanax_mexicanus
ENSDARG00000070471	tarbp2	100	65.574	ENSBTAG00000000435	TARBP2	100	65.847	Bos_taurus
ENSDARG00000070471	tarbp2	100	65.847	ENSCJAG00000018668	TARBP2	100	65.027	Callithrix_jacchus
ENSDARG00000070471	tarbp2	100	69.942	ENSCAFG00000006874	TARBP2	100	69.253	Canis_familiaris
ENSDARG00000070471	tarbp2	100	65.574	ENSCAFG00020020735	TARBP2	100	67.536	Canis_lupus_dingo
ENSDARG00000070471	tarbp2	100	64.595	ENSCHIG00000026017	TARBP2	100	64.595	Capra_hircus
ENSDARG00000070471	tarbp2	100	66.120	ENSTSYG00000035683	TARBP2	94	75.676	Carlito_syrichta
ENSDARG00000070471	tarbp2	64	72.523	ENSCAPG00000008981	TARBP2	98	72.523	Cavia_aperea
ENSDARG00000070471	tarbp2	100	66.213	ENSCPOG00000001009	TARBP2	100	65.940	Cavia_porcellus
ENSDARG00000070471	tarbp2	100	65.574	ENSCCAG00000033025	TARBP2	91	92.453	Cebus_capucinus
ENSDARG00000070471	tarbp2	100	64.850	ENSCATG00000026344	TARBP2	94	75.676	Cercocebus_atys
ENSDARG00000070471	tarbp2	100	65.940	ENSCLAG00000009175	TARBP2	100	65.123	Chinchilla_lanigera
ENSDARG00000070471	tarbp2	100	64.850	ENSCSAG00000005479	TARBP2	100	64.754	Chlorocebus_sabaeus
ENSDARG00000070471	tarbp2	100	68.320	ENSCPBG00000000654	TARBP2	100	70.760	Chrysemys_picta_bellii
ENSDARG00000070471	tarbp2	100	65.027	ENSCANG00000040415	TARBP2	91	90.566	Colobus_angolensis_palliatus
ENSDARG00000070471	tarbp2	100	65.479	ENSCGRG00001011856	TARBP2	100	64.932	Cricetulus_griseus_chok1gshd
ENSDARG00000070471	tarbp2	100	65.479	ENSCGRG00000009088	TARBP2	100	66.255	Cricetulus_griseus_crigri
ENSDARG00000070471	tarbp2	100	81.322	ENSCSEG00000010631	tarbp2	100	81.322	Cynoglossus_semilaevis
ENSDARG00000070471	tarbp2	100	81.609	ENSCVAG00000009832	tarbp2	100	81.556	Cyprinodon_variegatus
ENSDARG00000070471	tarbp2	100	65.301	ENSDNOG00000002144	TARBP2	100	64.754	Dasypus_novemcinctus
ENSDARG00000070471	tarbp2	65	71.875	ENSDORG00000001390	Tarbp2	92	71.875	Dipodomys_ordii
ENSDARG00000070471	tarbp2	87	78.000	ENSETEG00000002458	TARBP2	77	75.949	Echinops_telfairi
ENSDARG00000070471	tarbp2	95	59.394	ENSEBUG00000002377	tarbp2	98	60.303	Eptatretus_burgeri
ENSDARG00000070471	tarbp2	100	66.120	ENSEASG00005010030	TARBP2	100	65.574	Equus_asinus_asinus
ENSDARG00000070471	tarbp2	100	68.768	ENSECAG00000011695	TARBP2	94	75.676	Equus_caballus
ENSDARG00000070471	tarbp2	84	62.821	ENSEEUG00000001128	-	99	62.179	Erinaceus_europaeus
ENSDARG00000070471	tarbp2	100	82.571	ENSELUG00000010642	tarbp2	100	83.143	Esox_lucius
ENSDARG00000070471	tarbp2	100	65.847	ENSFCAG00000007757	TARBP2	100	65.847	Felis_catus
ENSDARG00000070471	tarbp2	100	66.213	ENSFDAG00000011932	TARBP2	100	66.803	Fukomys_damarensis
ENSDARG00000070471	tarbp2	94	84.098	ENSFHEG00000016118	tarbp2	100	84.098	Fundulus_heteroclitus
ENSDARG00000070471	tarbp2	100	79.714	ENSGMOG00000001290	tarbp2	100	79.714	Gadus_morhua
ENSDARG00000070471	tarbp2	64	73.303	ENSGALG00000038939	-	83	73.303	Gallus_gallus
ENSDARG00000070471	tarbp2	100	81.609	ENSGAFG00000013341	tarbp2	100	81.322	Gambusia_affinis
ENSDARG00000070471	tarbp2	100	78.431	ENSGACG00000006645	tarbp2	100	78.431	Gasterosteus_aculeatus
ENSDARG00000070471	tarbp2	100	68.871	ENSGAGG00000021169	TARBP2	100	69.421	Gopherus_agassizii
ENSDARG00000070471	tarbp2	95	67.908	ENSGGOG00000012637	TARBP2	72	92.982	Gorilla_gorilla
ENSDARG00000070471	tarbp2	100	81.609	ENSHBUG00000018639	tarbp2	100	81.609	Haplochromis_burtoni
ENSDARG00000070471	tarbp2	100	66.213	ENSHGLG00000001284	TARBP2	100	65.395	Heterocephalus_glaber_female
ENSDARG00000070471	tarbp2	100	66.213	ENSHGLG00100011274	TARBP2	100	65.395	Heterocephalus_glaber_male
ENSDARG00000070471	tarbp2	100	79.023	ENSHCOG00000001027	tarbp2	100	78.161	Hippocampus_comes
ENSDARG00000070471	tarbp2	100	86.610	ENSIPUG00000023701	tarbp2	100	86.610	Ictalurus_punctatus
ENSDARG00000070471	tarbp2	95	68.481	ENSSTOG00000003678	TARBP2	100	66.803	Ictidomys_tridecemlineatus
ENSDARG00000070471	tarbp2	100	82.759	ENSKMAG00000012142	tarbp2	100	82.184	Kryptolebias_marmoratus
ENSDARG00000070471	tarbp2	100	81.513	ENSLBEG00000015027	tarbp2	100	80.952	Labrus_bergylta
ENSDARG00000070471	tarbp2	95	66.269	ENSLACG00000007087	TARBP2	60	77.833	Latimeria_chalumnae
ENSDARG00000070471	tarbp2	100	79.714	ENSLOCG00000005711	tarbp2	100	79.714	Lepisosteus_oculatus
ENSDARG00000070471	tarbp2	70	62.835	ENSLAFG00000002620	TARBP2	70	89.831	Loxodonta_africana
ENSDARG00000070471	tarbp2	100	64.850	ENSMFAG00000013567	TARBP2	94	75.676	Macaca_fascicularis
ENSDARG00000070471	tarbp2	100	65.123	ENSMMUG00000018492	TARBP2	100	65.027	Macaca_mulatta
ENSDARG00000070471	tarbp2	100	64.850	ENSMNEG00000036477	TARBP2	94	75.676	Macaca_nemestrina
ENSDARG00000070471	tarbp2	100	64.943	ENSMLEG00000029583	TARBP2	94	75.676	Mandrillus_leucophaeus
ENSDARG00000070471	tarbp2	95	81.707	ENSMAMG00000010272	tarbp2	97	79.651	Mastacembelus_armatus
ENSDARG00000070471	tarbp2	100	81.609	ENSMZEG00005006895	tarbp2	100	81.609	Maylandia_zebra
ENSDARG00000070471	tarbp2	100	65.205	ENSMAUG00000019805	Tarbp2	100	64.658	Mesocricetus_auratus
ENSDARG00000070471	tarbp2	94	67.826	ENSMICG00000027441	TARBP2	94	75.676	Microcebus_murinus
ENSDARG00000070471	tarbp2	100	65.753	ENSMOCG00000003691	Tarbp2	100	65.479	Microtus_ochrogaster
ENSDARG00000070471	tarbp2	94	81.325	ENSMMOG00000010374	tarbp2	100	81.194	Mola_mola
ENSDARG00000070471	tarbp2	100	80.692	ENSMALG00000009773	tarbp2	100	81.034	Monopterus_albus
ENSDARG00000070471	tarbp2	100	65.479	MGP_CAROLIEiJ_G0020356	Tarbp2	91	92.453	Mus_caroli
ENSDARG00000070471	tarbp2	100	65.479	ENSMUSG00000023051	Tarbp2	91	92.453	Mus_musculus
ENSDARG00000070471	tarbp2	100	65.479	MGP_PahariEiJ_G0020355	Tarbp2	91	92.453	Mus_pahari
ENSDARG00000070471	tarbp2	100	65.479	MGP_SPRETEiJ_G0021249	Tarbp2	91	92.453	Mus_spretus
ENSDARG00000070471	tarbp2	100	65.753	ENSMPUG00000005944	TARBP2	100	65.479	Mustela_putorius_furo
ENSDARG00000070471	tarbp2	100	66.667	ENSMLUG00000010035	TARBP2	100	66.120	Myotis_lucifugus
ENSDARG00000070471	tarbp2	100	65.574	ENSNLEG00000017690	TARBP2	94	75.676	Nomascus_leucogenys
ENSDARG00000070471	tarbp2	96	72.892	ENSMEUG00000001916	TARBP2	96	72.289	Notamacropus_eugenii
ENSDARG00000070471	tarbp2	64	73.303	ENSOPRG00000011397	TARBP2	98	73.303	Ochotona_princeps
ENSDARG00000070471	tarbp2	60	68.584	ENSODEG00000013413	TARBP2	100	67.257	Octodon_degus
ENSDARG00000070471	tarbp2	95	78.917	ENSONIG00000005115	tarbp2	96	78.348	Oreochromis_niloticus
ENSDARG00000070471	tarbp2	100	67.213	ENSOCUG00000005700	TARBP2	100	66.120	Oryctolagus_cuniculus
ENSDARG00000070471	tarbp2	100	80.747	ENSORLG00000005209	tarbp2	100	80.460	Oryzias_latipes
ENSDARG00000070471	tarbp2	100	80.747	ENSORLG00020017755	tarbp2	100	80.460	Oryzias_latipes_hni
ENSDARG00000070471	tarbp2	100	80.747	ENSORLG00015013237	tarbp2	100	80.460	Oryzias_latipes_hsok
ENSDARG00000070471	tarbp2	100	82.184	ENSOMEG00000018860	tarbp2	100	81.609	Oryzias_melastigma
ENSDARG00000070471	tarbp2	100	65.847	ENSOGAG00000001744	TARBP2	100	64.754	Otolemur_garnettii
ENSDARG00000070471	tarbp2	100	65.301	ENSOARG00000016437	TARBP2	100	65.574	Ovis_aries
ENSDARG00000070471	tarbp2	100	65.574	ENSPPAG00000030429	TARBP2	94	75.676	Pan_paniscus
ENSDARG00000070471	tarbp2	100	65.847	ENSPPRG00000000189	TARBP2	100	65.847	Panthera_pardus
ENSDARG00000070471	tarbp2	100	68.067	ENSPTIG00000007859	TARBP2	100	67.507	Panthera_tigris_altaica
ENSDARG00000070471	tarbp2	100	65.574	ENSPTRG00000005020	TARBP2	94	75.676	Pan_troglodytes
ENSDARG00000070471	tarbp2	100	64.850	ENSPANG00000010689	TARBP2	94	75.676	Papio_anubis
ENSDARG00000070471	tarbp2	100	79.387	ENSPKIG00000002455	tarbp2	100	78.492	Paramormyrops_kingsleyae
ENSDARG00000070471	tarbp2	100	81.609	ENSPMGG00000006497	tarbp2	100	81.034	Periophthalmus_magnuspinnatus
ENSDARG00000070471	tarbp2	100	64.658	ENSPEMG00000014285	Tarbp2	100	64.384	Peromyscus_maniculatus_bairdii
ENSDARG00000070471	tarbp2	92	61.994	ENSPMAG00000000105	tarbp2	99	61.994	Petromyzon_marinus
ENSDARG00000070471	tarbp2	96	72.673	ENSPCIG00000006672	TARBP2	89	72.289	Phascolarctos_cinereus
ENSDARG00000070471	tarbp2	100	82.759	ENSPFOG00000007586	tarbp2	100	82.471	Poecilia_formosa
ENSDARG00000070471	tarbp2	100	82.759	ENSPLAG00000017659	tarbp2	100	82.471	Poecilia_latipinna
ENSDARG00000070471	tarbp2	100	82.759	ENSPMEG00000007775	tarbp2	100	82.471	Poecilia_mexicana
ENSDARG00000070471	tarbp2	100	82.471	ENSPREG00000007815	tarbp2	100	82.184	Poecilia_reticulata
ENSDARG00000070471	tarbp2	95	67.477	ENSPPYG00000004583	TARBP2	95	68.085	Pongo_abelii
ENSDARG00000070471	tarbp2	65	72.321	ENSPCAG00000005352	TARBP2	61	72.321	Procavia_capensis
ENSDARG00000070471	tarbp2	100	65.395	ENSPCOG00000013102	TARBP2	94	75.676	Propithecus_coquereli
ENSDARG00000070471	tarbp2	100	65.489	ENSPVAG00000012286	TARBP2	100	65.574	Pteropus_vampyrus
ENSDARG00000070471	tarbp2	100	81.609	ENSPNYG00000014125	tarbp2	100	81.609	Pundamilia_nyererei
ENSDARG00000070471	tarbp2	100	91.092	ENSPNAG00000011128	tarbp2	100	91.092	Pygocentrus_nattereri
ENSDARG00000070471	tarbp2	100	65.205	ENSRNOG00000042355	Tarbp2	100	64.658	Rattus_norvegicus
ENSDARG00000070471	tarbp2	100	65.574	ENSRBIG00000027150	TARBP2	94	75.676	Rhinopithecus_bieti
ENSDARG00000070471	tarbp2	100	65.574	ENSRROG00000044783	TARBP2	94	75.676	Rhinopithecus_roxellana
ENSDARG00000070471	tarbp2	100	65.574	ENSSBOG00000027305	TARBP2	94	75.676	Saimiri_boliviensis_boliviensis
ENSDARG00000070471	tarbp2	94	72.699	ENSSHAG00000007064	TARBP2	100	72.308	Sarcophilus_harrisii
ENSDARG00000070471	tarbp2	100	80.278	ENSSFOG00015010784	tarbp2	100	79.722	Scleropages_formosus
ENSDARG00000070471	tarbp2	100	80.737	ENSSMAG00000012769	tarbp2	100	81.356	Scophthalmus_maximus
ENSDARG00000070471	tarbp2	100	81.844	ENSSDUG00000018818	tarbp2	100	82.759	Seriola_dumerili
ENSDARG00000070471	tarbp2	100	81.556	ENSSLDG00000001835	tarbp2	100	82.471	Seriola_lalandi_dorsalis
ENSDARG00000070471	tarbp2	76	69.652	ENSSARG00000001010	TARBP2	73	69.652	Sorex_araneus
ENSDARG00000070471	tarbp2	98	52.770	ENSSPUG00000005895	TARBP2	70	77.465	Sphenodon_punctatus
ENSDARG00000070471	tarbp2	100	82.471	ENSSPAG00000022797	tarbp2	100	81.897	Stegastes_partitus
ENSDARG00000070471	tarbp2	100	65.301	ENSSSCG00000000276	TARBP2	100	67.246	Sus_scrofa
ENSDARG00000070471	tarbp2	70	55.882	ENSTGUG00000017031	TARBP2	70	80.328	Taeniopygia_guttata
ENSDARG00000070471	tarbp2	100	83.908	ENSTRUG00000014379	tarbp2	100	83.333	Takifugu_rubripes
ENSDARG00000070471	tarbp2	100	82.184	ENSTNIG00000007065	tarbp2	100	81.609	Tetraodon_nigroviridis
ENSDARG00000070471	tarbp2	50	72.093	ENSTBEG00000012751	-	55	72.093	Tupaia_belangeri
ENSDARG00000070471	tarbp2	100	66.393	ENSTTRG00000017177	TARBP2	100	65.847	Tursiops_truncatus
ENSDARG00000070471	tarbp2	100	65.847	ENSUAMG00000009011	TARBP2	100	65.847	Ursus_americanus
ENSDARG00000070471	tarbp2	100	65.301	ENSUMAG00000010461	TARBP2	100	65.301	Ursus_maritimus
ENSDARG00000070471	tarbp2	100	65.574	ENSVVUG00000028150	TARBP2	100	67.536	Vulpes_vulpes
ENSDARG00000070471	tarbp2	97	70.286	ENSXETG00000012644	tarbp2	97	70.402	Xenopus_tropicalis
ENSDARG00000070471	tarbp2	100	83.046	ENSXMAG00000017836	tarbp2	100	82.759	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0003725	double-stranded RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0016442	RISC complex	-	IEA	Component
GO:0030422	production of siRNA involved in RNA interference	-	IEA	Process
GO:0030423	targeting of mRNA for destruction involved in RNA interference	-	IEA	Process
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0031054	pre-miRNA processing	-	IEA	Process
GO:0035068	micro-ribonucleoprotein complex	-	ISS	Component
GO:0035197	siRNA binding	-	IEA	Function
GO:0035198	miRNA binding	-	IEA	Function
GO:0035280	miRNA loading onto RISC involved in gene silencing by miRNA	-	IEA	Process
GO:0042803	protein homodimerization activity	-	IEA	Function
GO:0046782	regulation of viral transcription	-	IEA	Process
GO:0070578	RISC-loading complex	-	IEA	Component
GO:0070578	RISC-loading complex	-	ISS	Component
GO:0070883	pre-miRNA binding	-	IEA	Function
GO:0090065	regulation of production of siRNA involved in RNA interference	-	IEA	Process
GO:1903798	regulation of production of miRNAs involved in gene silencing by miRNA	-	IEA	Process