EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000070475 (Gene tree)
Gene ID: 406516
Gene Symbol: khdrbs1b
Alias: sb:cb97|wu:fb07d11|wu:fi43c05|zgc:85948
Full Name: KH domain containing%2C RNA binding%2C signal transduction associated 1b
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 10384 bases
Position: chr19:30348676-30359059
Accession: ZDB-GENE-040426-2344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000094247	KH_1	PF00013.29	1.4e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000137381	-	542	-	-	- (aa)	-	-
ENSDART00000146847	-	1333	-	-	- (aa)	-	-
ENSDART00000103471	-	2826	-	ENSDARP00000094247	352 (aa)	-	Q6NW62

Gene Model

Click here to download ENSDARG00000070475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000070475's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000070475	khdrbs1b	99	61.708	ENSDARG00000052856	khdrbs1a	97	61.983
ENSDARG00000070475	khdrbs1b	85	45.806	ENSDARG00000101020	KHDRBS3	99	41.121
ENSDARG00000070475	khdrbs1b	99	49.734	ENSDARG00000069469	khdrbs2	99	49.300

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000070475	khdrbs1b	100	65.169	ENSG00000121774	KHDRBS1	78	61.453	Homo_sapiens
ENSDARG00000070475	khdrbs1b	99	61.905	ENSAPOG00000011054	khdrbs1a	93	54.688	Acanthochromis_polyacanthus
ENSDARG00000070475	khdrbs1b	100	74.725	ENSAPOG00000000893	khdrbs1b	100	71.507	Acanthochromis_polyacanthus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSAMEG00000007969	KHDRBS1	83	63.842	Ailuropoda_melanoleuca
ENSDARG00000070475	khdrbs1b	100	74.044	ENSACIG00000006462	khdrbs1b	100	65.193	Amphilophus_citrinellus
ENSDARG00000070475	khdrbs1b	99	63.536	ENSAOCG00000018612	khdrbs1a	93	60.388	Amphiprion_ocellaris
ENSDARG00000070475	khdrbs1b	100	75.275	ENSAOCG00000005657	khdrbs1b	100	72.055	Amphiprion_ocellaris
ENSDARG00000070475	khdrbs1b	100	75.000	ENSAPEG00000003469	khdrbs1b	100	71.781	Amphiprion_percula
ENSDARG00000070475	khdrbs1b	98	64.804	ENSATEG00000005443	khdrbs1a	96	58.904	Anabas_testudineus
ENSDARG00000070475	khdrbs1b	100	70.461	ENSATEG00000007550	khdrbs1b	100	66.396	Anabas_testudineus
ENSDARG00000070475	khdrbs1b	93	60.059	ENSAPLG00000006587	KHDRBS1	100	61.012	Anas_platyrhynchos
ENSDARG00000070475	khdrbs1b	99	59.497	ENSACAG00000011693	KHDRBS1	100	57.542	Anolis_carolinensis
ENSDARG00000070475	khdrbs1b	100	65.169	ENSANAG00000026939	KHDRBS1	78	61.453	Aotus_nancymaae
ENSDARG00000070475	khdrbs1b	100	74.114	ENSACLG00000012927	khdrbs1b	100	67.302	Astatotilapia_calliptera
ENSDARG00000070475	khdrbs1b	100	75.419	ENSAMXG00000011853	khdrbs1b	100	72.753	Astyanax_mexicanus
ENSDARG00000070475	khdrbs1b	100	61.828	ENSAMXG00000002827	khdrbs1a	95	57.995	Astyanax_mexicanus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSBTAG00000012497	KHDRBS1	78	61.453	Bos_taurus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCJAG00000006580	KHDRBS1	63	61.453	Callithrix_jacchus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCAFG00000010777	KHDRBS1	82	63.842	Canis_familiaris
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCAFG00020025153	KHDRBS1	78	61.453	Canis_lupus_dingo
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCHIG00000013092	KHDRBS1	78	61.453	Capra_hircus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSTSYG00000004921	KHDRBS1	79	63.842	Carlito_syrichta
ENSDARG00000070475	khdrbs1b	100	64.888	ENSCPOG00000024148	KHDRBS1	78	61.173	Cavia_porcellus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCATG00000044448	KHDRBS1	78	61.453	Cercocebus_atys
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCLAG00000015761	KHDRBS1	78	63.842	Chinchilla_lanigera
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCSAG00000001043	KHDRBS1	63	61.453	Chlorocebus_sabaeus
ENSDARG00000070475	khdrbs1b	77	78.646	ENSCHOG00000006973	KHDRBS1	57	80.447	Choloepus_hoffmanni
ENSDARG00000070475	khdrbs1b	100	65.546	ENSCPBG00000011092	KHDRBS1	83	61.127	Chrysemys_picta_bellii
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCANG00000039547	KHDRBS1	92	63.842	Colobus_angolensis_palliatus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCGRG00001018212	Khdrbs1	78	63.842	Cricetulus_griseus_chok1gshd
ENSDARG00000070475	khdrbs1b	100	65.169	ENSCGRG00000007017	Khdrbs1	78	63.842	Cricetulus_griseus_crigri
ENSDARG00000070475	khdrbs1b	100	72.376	ENSCSEG00000011915	khdrbs1b	100	65.470	Cynoglossus_semilaevis
ENSDARG00000070475	khdrbs1b	92	75.294	ENSCVAG00000016032	khdrbs1b	98	69.643	Cyprinodon_variegatus
ENSDARG00000070475	khdrbs1b	100	64.146	ENSDNOG00000039857	KHDRBS1	78	61.173	Dasypus_novemcinctus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSDORG00000011530	Khdrbs1	79	62.254	Dipodomys_ordii
ENSDARG00000070475	khdrbs1b	100	65.169	ENSEASG00005010927	KHDRBS1	78	61.453	Equus_asinus_asinus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSECAG00000019346	KHDRBS1	78	61.453	Equus_caballus
ENSDARG00000070475	khdrbs1b	100	68.135	ENSELUG00000003895	khdrbs1a	100	62.921	Esox_lucius
ENSDARG00000070475	khdrbs1b	99	65.375	ENSELUG00000018597	khdrbs1b	99	63.784	Esox_lucius
ENSDARG00000070475	khdrbs1b	100	65.169	ENSFCAG00000006511	KHDRBS1	78	61.453	Felis_catus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSFDAG00000009053	KHDRBS1	78	63.842	Fukomys_damarensis
ENSDARG00000070475	khdrbs1b	100	71.781	ENSFHEG00000017102	khdrbs1b	100	67.760	Fundulus_heteroclitus
ENSDARG00000070475	khdrbs1b	99	61.930	ENSFHEG00000017506	khdrbs1a	99	58.245	Fundulus_heteroclitus
ENSDARG00000070475	khdrbs1b	80	73.077	ENSGMOG00000011695	khdrbs1a	70	73.596	Gadus_morhua
ENSDARG00000070475	khdrbs1b	100	62.259	ENSGALG00000003272	KHDRBS1	82	63.536	Gallus_gallus
ENSDARG00000070475	khdrbs1b	100	75.549	ENSGAFG00000018819	khdrbs1b	100	68.219	Gambusia_affinis
ENSDARG00000070475	khdrbs1b	100	65.546	ENSGAGG00000000937	KHDRBS1	83	60.845	Gopherus_agassizii
ENSDARG00000070475	khdrbs1b	100	65.169	ENSGGOG00000008633	KHDRBS1	78	61.453	Gorilla_gorilla
ENSDARG00000070475	khdrbs1b	100	74.114	ENSHBUG00000023083	khdrbs1b	100	67.302	Haplochromis_burtoni
ENSDARG00000070475	khdrbs1b	100	65.169	ENSHGLG00000011935	KHDRBS1	78	63.842	Heterocephalus_glaber_female
ENSDARG00000070475	khdrbs1b	100	65.169	ENSHGLG00100008915	KHDRBS1	82	63.842	Heterocephalus_glaber_male
ENSDARG00000070475	khdrbs1b	99	68.000	ENSHCOG00000018060	khdrbs1b	99	68.182	Hippocampus_comes
ENSDARG00000070475	khdrbs1b	100	79.775	ENSIPUG00000014237	Khdrbs1	100	79.379	Ictalurus_punctatus
ENSDARG00000070475	khdrbs1b	100	65.135	ENSIPUG00000019749	khdrbs1a	94	59.783	Ictalurus_punctatus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSSTOG00000014138	KHDRBS1	78	63.842	Ictidomys_tridecemlineatus
ENSDARG00000070475	khdrbs1b	100	66.292	ENSJJAG00000016809	Khdrbs1	78	63.739	Jaculus_jaculus
ENSDARG00000070475	khdrbs1b	100	75.477	ENSKMAG00000001634	khdrbs1b	100	67.030	Kryptolebias_marmoratus
ENSDARG00000070475	khdrbs1b	100	68.451	ENSLBEG00000009832	khdrbs1b	100	60.556	Labrus_bergylta
ENSDARG00000070475	khdrbs1b	91	59.281	ENSLACG00000010345	KHDRBS1	100	57.798	Latimeria_chalumnae
ENSDARG00000070475	khdrbs1b	100	71.989	ENSLOCG00000002273	khdrbs1a	98	71.429	Lepisosteus_oculatus
ENSDARG00000070475	khdrbs1b	100	64.607	ENSLAFG00000009414	KHDRBS1	90	63.277	Loxodonta_africana
ENSDARG00000070475	khdrbs1b	100	65.169	ENSMFAG00000001194	KHDRBS1	78	61.453	Macaca_fascicularis
ENSDARG00000070475	khdrbs1b	100	65.169	ENSMNEG00000035607	KHDRBS1	78	61.453	Macaca_nemestrina
ENSDARG00000070475	khdrbs1b	100	65.169	ENSMLEG00000032825	KHDRBS1	96	63.559	Mandrillus_leucophaeus
ENSDARG00000070475	khdrbs1b	99	63.288	ENSMAMG00000008449	khdrbs1a	96	57.796	Mastacembelus_armatus
ENSDARG00000070475	khdrbs1b	100	68.548	ENSMAMG00000004312	khdrbs1b	100	68.232	Mastacembelus_armatus
ENSDARG00000070475	khdrbs1b	100	74.114	ENSMZEG00005000823	khdrbs1b	100	67.302	Maylandia_zebra
ENSDARG00000070475	khdrbs1b	93	59.882	ENSMGAG00000004455	KHDRBS1	100	61.243	Meleagris_gallopavo
ENSDARG00000070475	khdrbs1b	100	65.169	ENSMICG00000001428	KHDRBS1	63	61.453	Microcebus_murinus
ENSDARG00000070475	khdrbs1b	100	64.888	ENSMOCG00000022233	Khdrbs1	78	63.559	Microtus_ochrogaster
ENSDARG00000070475	khdrbs1b	99	64.850	ENSMMOG00000002147	khdrbs1a	99	61.127	Mola_mola
ENSDARG00000070475	khdrbs1b	100	67.232	ENSMMOG00000021224	khdrbs1b	100	63.456	Mola_mola
ENSDARG00000070475	khdrbs1b	100	64.888	ENSMODG00000017551	-	77	60.112	Monodelphis_domestica
ENSDARG00000070475	khdrbs1b	100	76.177	ENSMALG00000000347	khdrbs1b	100	73.333	Monopterus_albus
ENSDARG00000070475	khdrbs1b	100	63.380	MGP_CAROLIEiJ_G0026534	Khdrbs1	78	63.277	Mus_caroli
ENSDARG00000070475	khdrbs1b	100	63.380	ENSMUSG00000028790	Khdrbs1	78	63.277	Mus_musculus
ENSDARG00000070475	khdrbs1b	100	63.099	MGP_PahariEiJ_G0028866	Khdrbs1	78	60.335	Mus_pahari
ENSDARG00000070475	khdrbs1b	100	63.380	MGP_SPRETEiJ_G0027514	Khdrbs1	78	63.277	Mus_spretus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSMPUG00000015353	KHDRBS1	78	61.453	Mustela_putorius_furo
ENSDARG00000070475	khdrbs1b	100	64.607	ENSMLUG00000008109	KHDRBS1	78	60.615	Myotis_lucifugus
ENSDARG00000070475	khdrbs1b	100	65.449	ENSNGAG00000021015	Khdrbs1	78	61.453	Nannospalax_galili
ENSDARG00000070475	khdrbs1b	100	73.569	ENSNBRG00000000441	khdrbs1b	100	67.302	Neolamprologus_brichardi
ENSDARG00000070475	khdrbs1b	91	64.000	ENSNLEG00000002148	-	88	59.714	Nomascus_leucogenys
ENSDARG00000070475	khdrbs1b	91	46.296	ENSMEUG00000015720	-	52	85.000	Notamacropus_eugenii
ENSDARG00000070475	khdrbs1b	89	61.950	ENSOPRG00000005131	KHDRBS1	77	60.127	Ochotona_princeps
ENSDARG00000070475	khdrbs1b	100	74.387	ENSONIG00000007705	khdrbs1b	98	67.575	Oreochromis_niloticus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSOCUG00000007654	KHDRBS1	78	61.453	Oryctolagus_cuniculus
ENSDARG00000070475	khdrbs1b	100	72.207	ENSORLG00000020884	khdrbs1b	100	67.751	Oryzias_latipes
ENSDARG00000070475	khdrbs1b	99	61.081	ENSORLG00000017156	khdrbs1a	99	61.247	Oryzias_latipes
ENSDARG00000070475	khdrbs1b	99	60.541	ENSORLG00020003020	khdrbs1a	96	60.705	Oryzias_latipes_hni
ENSDARG00000070475	khdrbs1b	100	71.390	ENSORLG00015008545	khdrbs1b	89	63.343	Oryzias_latipes_hsok
ENSDARG00000070475	khdrbs1b	99	61.081	ENSORLG00015017288	khdrbs1a	96	61.247	Oryzias_latipes_hsok
ENSDARG00000070475	khdrbs1b	100	71.390	ENSOMEG00000004739	khdrbs1b	50	86.517	Oryzias_melastigma
ENSDARG00000070475	khdrbs1b	100	64.525	ENSOGAG00000004582	KHDRBS1	78	61.972	Otolemur_garnettii
ENSDARG00000070475	khdrbs1b	99	60.795	ENSOARG00000000666	KHDRBS1	78	57.062	Ovis_aries
ENSDARG00000070475	khdrbs1b	100	65.169	ENSPPAG00000035456	KHDRBS1	78	61.453	Pan_paniscus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSPPRG00000009461	KHDRBS1	78	61.453	Panthera_pardus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSPTIG00000007835	KHDRBS1	78	63.842	Panthera_tigris_altaica
ENSDARG00000070475	khdrbs1b	100	65.169	ENSPTRG00000000469	KHDRBS1	78	61.453	Pan_troglodytes
ENSDARG00000070475	khdrbs1b	100	65.169	ENSPANG00000023230	KHDRBS1	63	61.453	Papio_anubis
ENSDARG00000070475	khdrbs1b	100	76.966	ENSPKIG00000024687	khdrbs1b	100	75.000	Paramormyrops_kingsleyae
ENSDARG00000070475	khdrbs1b	100	60.833	ENSPKIG00000011578	khdrbs1a	100	58.611	Paramormyrops_kingsleyae
ENSDARG00000070475	khdrbs1b	93	63.554	ENSPSIG00000005721	KHDRBS1	99	58.841	Pelodiscus_sinensis
ENSDARG00000070475	khdrbs1b	100	64.888	ENSPEMG00000024209	Khdrbs1	78	63.559	Peromyscus_maniculatus_bairdii
ENSDARG00000070475	khdrbs1b	100	47.258	ENSPMAG00000004531	khdrbs1a	100	45.238	Petromyzon_marinus
ENSDARG00000070475	khdrbs1b	100	64.607	ENSPCIG00000022322	KHDRBS1	77	59.831	Phascolarctos_cinereus
ENSDARG00000070475	khdrbs1b	99	61.640	ENSPFOG00000022410	khdrbs1a	99	53.018	Poecilia_formosa
ENSDARG00000070475	khdrbs1b	100	76.022	ENSPFOG00000012131	khdrbs1b	100	67.575	Poecilia_formosa
ENSDARG00000070475	khdrbs1b	100	76.022	ENSPLAG00000000612	khdrbs1b	100	67.575	Poecilia_latipinna
ENSDARG00000070475	khdrbs1b	100	75.749	ENSPMEG00000019927	khdrbs1b	100	67.030	Poecilia_mexicana
ENSDARG00000070475	khdrbs1b	100	75.749	ENSPREG00000016786	khdrbs1b	100	67.030	Poecilia_reticulata
ENSDARG00000070475	khdrbs1b	100	65.169	ENSPPYG00000001605	KHDRBS1	63	61.453	Pongo_abelii
ENSDARG00000070475	khdrbs1b	100	64.888	ENSPCAG00000009844	KHDRBS1	79	63.559	Procavia_capensis
ENSDARG00000070475	khdrbs1b	100	65.169	ENSPCOG00000019588	-	78	63.842	Propithecus_coquereli
ENSDARG00000070475	khdrbs1b	100	62.254	ENSPCOG00000024908	-	83	57.222	Propithecus_coquereli
ENSDARG00000070475	khdrbs1b	100	64.888	ENSPVAG00000013289	KHDRBS1	78	60.894	Pteropus_vampyrus
ENSDARG00000070475	khdrbs1b	100	74.114	ENSPNYG00000004607	khdrbs1b	100	67.302	Pundamilia_nyererei
ENSDARG00000070475	khdrbs1b	100	75.487	ENSPNAG00000029804	khdrbs1b	100	76.751	Pygocentrus_nattereri
ENSDARG00000070475	khdrbs1b	100	63.662	ENSRNOG00000046794	Khdrbs1	78	63.559	Rattus_norvegicus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSRBIG00000028373	KHDRBS1	78	61.453	Rhinopithecus_bieti
ENSDARG00000070475	khdrbs1b	100	65.169	ENSRROG00000043518	KHDRBS1	63	61.453	Rhinopithecus_roxellana
ENSDARG00000070475	khdrbs1b	100	65.169	ENSSBOG00000031548	KHDRBS1	94	63.559	Saimiri_boliviensis_boliviensis
ENSDARG00000070475	khdrbs1b	100	64.888	ENSSHAG00000007106	KHDRBS1	97	59.831	Sarcophilus_harrisii
ENSDARG00000070475	khdrbs1b	99	64.345	ENSSFOG00015023564	-	99	63.866	Scleropages_formosus
ENSDARG00000070475	khdrbs1b	100	75.843	ENSSFOG00015007055	khdrbs1b	100	73.315	Scleropages_formosus
ENSDARG00000070475	khdrbs1b	100	69.624	ENSSMAG00000020593	khdrbs1b	100	67.302	Scophthalmus_maximus
ENSDARG00000070475	khdrbs1b	100	71.390	ENSSDUG00000001503	khdrbs1b	100	67.302	Seriola_dumerili
ENSDARG00000070475	khdrbs1b	100	69.837	ENSSLDG00000005200	khdrbs1b	100	64.578	Seriola_lalandi_dorsalis
ENSDARG00000070475	khdrbs1b	91	63.158	ENSSARG00000008479	KHDRBS1	71	58.589	Sorex_araneus
ENSDARG00000070475	khdrbs1b	100	63.333	ENSSPUG00000017881	KHDRBS1	82	59.777	Sphenodon_punctatus
ENSDARG00000070475	khdrbs1b	100	74.590	ENSSPAG00000000646	khdrbs1b	100	70.572	Stegastes_partitus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSSSCG00000023122	KHDRBS1	78	61.453	Sus_scrofa
ENSDARG00000070475	khdrbs1b	99	63.611	ENSTRUG00000012039	khdrbs1a	98	60.165	Takifugu_rubripes
ENSDARG00000070475	khdrbs1b	100	72.603	ENSTRUG00000010001	khdrbs1b	100	70.959	Takifugu_rubripes
ENSDARG00000070475	khdrbs1b	100	72.329	ENSTNIG00000013071	khdrbs1b	99	70.959	Tetraodon_nigroviridis
ENSDARG00000070475	khdrbs1b	99	65.097	ENSTNIG00000017471	khdrbs1a	98	62.983	Tetraodon_nigroviridis
ENSDARG00000070475	khdrbs1b	91	62.229	ENSTBEG00000016857	KHDRBS1	100	56.386	Tupaia_belangeri
ENSDARG00000070475	khdrbs1b	100	65.169	ENSTTRG00000009637	KHDRBS1	78	61.453	Tursiops_truncatus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSUAMG00000009175	KHDRBS1	78	61.453	Ursus_americanus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSUMAG00000008568	KHDRBS1	100	63.559	Ursus_maritimus
ENSDARG00000070475	khdrbs1b	100	65.169	ENSVPAG00000006966	KHDRBS1	78	61.453	Vicugna_pacos
ENSDARG00000070475	khdrbs1b	100	65.169	ENSVVUG00000015032	KHDRBS1	78	61.453	Vulpes_vulpes
ENSDARG00000070475	khdrbs1b	100	58.981	ENSXETG00000005246	khdrbs1	97	60.556	Xenopus_tropicalis
ENSDARG00000070475	khdrbs1b	99	62.040	ENSXCOG00000011027	khdrbs1a	99	62.606	Xiphophorus_couchianus
ENSDARG00000070475	khdrbs1b	100	76.022	ENSXMAG00000005713	khdrbs1b	100	67.302	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function