EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000070812 (Gene tree)
Gene ID: 100004008
Gene Symbol: si:ch211-156l18.6
Alias: -
Full Name: si:ch211-156l18.6
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1897 bases
Position: chr11:12218106-12220002
Accession: ZDB-GENE-141222-85
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000099851	zf-CCHC_2	PF13696.6	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000168025	-	525	XM_021474231	ENSDARP00000133966	174 (aa)	XP_021329906	E9QC66
ENSDART00000108681	-	1011	-	ENSDARP00000099778	174 (aa)	-	E9QC66
ENSDART00000169553	-	1254	-	-	- (aa)	-	-
ENSDART00000112677	-	1037	-	ENSDARP00000099851	278 (aa)	-	E7F162

Gene Model

Click here to download ENSDARG00000070812's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000070812's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000070812	si:ch211-156l18.6	100	97.842	ENSDARG00000088552	si:dkey-23f9.13	100	97.842
ENSDARG00000070812	si:ch211-156l18.6	100	97.122	ENSDARG00000094335	si:dkey-23f9.12	100	97.122
ENSDARG00000070812	si:ch211-156l18.6	100	97.482	ENSDARG00000110591	si:dkey-27d5.6	100	97.482
ENSDARG00000070812	si:ch211-156l18.6	100	97.122	ENSDARG00000116389	CR450764.8	100	97.122
ENSDARG00000070812	si:ch211-156l18.6	100	98.201	ENSDARG00000100754	CR450764.1	100	98.201
ENSDARG00000070812	si:ch211-156l18.6	100	97.842	ENSDARG00000112365	zgc:174353	100	97.842
ENSDARG00000070812	si:ch211-156l18.6	100	98.561	ENSDARG00000111826	zgc:174354	100	98.561
ENSDARG00000070812	si:ch211-156l18.6	100	94.604	ENSDARG00000094196	si:dkey-27d5.10	100	94.604
ENSDARG00000070812	si:ch211-156l18.6	100	98.201	ENSDARG00000113994	zgc:174354	100	98.201
ENSDARG00000070812	si:ch211-156l18.6	100	97.842	ENSDARG00000115079	zgc:174353	100	97.842
ENSDARG00000070812	si:ch211-156l18.6	100	97.842	ENSDARG00000113889	zgc:174355	100	97.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000070812	si:ch211-156l18.6	79	35.498	WBGene00009477	rbpl-1	51	31.606	Caenorhabditis_elegans
ENSDARG00000070812	si:ch211-156l18.6	71	35.345	ENSCING00000017248	-	99	34.914	Ciona_intestinalis
ENSDARG00000070812	si:ch211-156l18.6	68	37.736	ENSCSAVG00000002639	-	100	37.736	Ciona_savignyi
ENSDARG00000070812	si:ch211-156l18.6	85	50.211	ENSGMOG00000004819	-	100	50.211	Gadus_morhua
ENSDARG00000070812	si:ch211-156l18.6	50	46.763	ENSGACG00000016781	-	51	47.154	Gasterosteus_aculeatus
ENSDARG00000070812	si:ch211-156l18.6	79	38.017	ENSLBEG00000021906	-	100	38.298	Labrus_bergylta
ENSDARG00000070812	si:ch211-156l18.6	84	50.622	ENSPFOG00000022154	-	59	49.789	Poecilia_formosa
ENSDARG00000070812	si:ch211-156l18.6	83	30.451	YKL059C	-	59	30.451	Saccharomyces_cerevisiae
ENSDARG00000070812	si:ch211-156l18.6	50	49.275	ENSSMAG00000008324	-	54	52.381	Scophthalmus_maximus
ENSDARG00000070812	si:ch211-156l18.6	53	44.898	ENSTNIG00000005451	-	54	45.736	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function