EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000071551 (Gene tree)
Gene ID: 334488
Gene Symbol: xrcc6
Alias: Ku autoantigen|Ku70|g22p1|wu:fi87b06|zgc:64131
Full Name: X-ray repair complementing defective repair in Chinese hamster cells 6
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4965 bases
Position: chr12:18899396-18904360
Accession: ZDB-GENE-030131-6420
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000096636	SAP	PF02037.27	4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000105858	-	2228	XM_021480029	ENSDARP00000096636	610 (aa)	XP_021335704	F1QZ60

Gene Model

Click here to download ENSDARG00000071551's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000071551's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000071551	xrcc6	99	58.361	ENSG00000196419	XRCC6	99	58.033	Homo_sapiens
ENSDARG00000071551	xrcc6	99	75.987	ENSAPOG00000012704	xrcc6	99	75.987	Acanthochromis_polyacanthus
ENSDARG00000071551	xrcc6	99	75.534	ENSACIG00000021277	xrcc6	99	75.862	Amphilophus_citrinellus
ENSDARG00000071551	xrcc6	99	75.698	ENSAOCG00000021344	xrcc6	99	75.862	Amphiprion_ocellaris
ENSDARG00000071551	xrcc6	99	75.862	ENSAPEG00000020712	xrcc6	99	76.026	Amphiprion_percula
ENSDARG00000071551	xrcc6	99	74.918	ENSATEG00000007119	xrcc6	99	75.574	Anabas_testudineus
ENSDARG00000071551	xrcc6	90	61.664	ENSAPLG00000004469	XRCC6	99	61.664	Anas_platyrhynchos
ENSDARG00000071551	xrcc6	99	51.475	ENSANAG00000035230	-	99	51.311	Aotus_nancymaae
ENSDARG00000071551	xrcc6	99	51.320	ENSANAG00000020017	-	90	61.084	Aotus_nancymaae
ENSDARG00000071551	xrcc6	99	49.351	ENSANAG00000023445	-	99	49.188	Aotus_nancymaae
ENSDARG00000071551	xrcc6	99	58.361	ENSANAG00000018684	XRCC6	98	59.707	Aotus_nancymaae
ENSDARG00000071551	xrcc6	99	75.205	ENSACLG00000018608	xrcc6	99	75.534	Astatotilapia_calliptera
ENSDARG00000071551	xrcc6	99	83.770	ENSAMXG00000007545	xrcc6	100	83.770	Astyanax_mexicanus
ENSDARG00000071551	xrcc6	99	58.361	ENSCJAG00000045512	XRCC6	99	58.197	Callithrix_jacchus
ENSDARG00000071551	xrcc6	100	56.260	ENSTSYG00000011348	XRCC6	99	56.423	Carlito_syrichta
ENSDARG00000071551	xrcc6	99	47.697	ENSCCAG00000035711	-	99	47.697	Cebus_capucinus
ENSDARG00000071551	xrcc6	99	48.185	ENSCCAG00000037663	-	96	48.185	Cebus_capucinus
ENSDARG00000071551	xrcc6	99	55.082	ENSCCAG00000030041	-	94	54.754	Cebus_capucinus
ENSDARG00000071551	xrcc6	89	62.222	ENSCCAG00000030468	-	99	62.222	Cebus_capucinus
ENSDARG00000071551	xrcc6	99	58.689	ENSCATG00000042366	XRCC6	98	60.171	Cercocebus_atys
ENSDARG00000071551	xrcc6	100	58.537	ENSCLAG00000016669	XRCC6	99	58.537	Chinchilla_lanigera
ENSDARG00000071551	xrcc6	99	58.689	ENSCSAG00000005784	XRCC6	99	58.361	Chlorocebus_sabaeus
ENSDARG00000071551	xrcc6	100	61.238	ENSCPBG00000020535	XRCC6	99	61.401	Chrysemys_picta_bellii
ENSDARG00000071551	xrcc6	98	35.702	ENSCING00000000633	-	95	36.116	Ciona_intestinalis
ENSDARG00000071551	xrcc6	99	58.689	ENSCANG00000031032	XRCC6	99	58.361	Colobus_angolensis_palliatus
ENSDARG00000071551	xrcc6	100	53.018	ENSCGRG00001019029	Xrcc6	99	53.018	Cricetulus_griseus_chok1gshd
ENSDARG00000071551	xrcc6	100	57.912	ENSCGRG00000001528	Xrcc6	99	57.912	Cricetulus_griseus_crigri
ENSDARG00000071551	xrcc6	99	72.131	ENSCSEG00000020434	xrcc6	99	72.131	Cynoglossus_semilaevis
ENSDARG00000071551	xrcc6	99	74.548	ENSCVAG00000002189	xrcc6	99	74.384	Cyprinodon_variegatus
ENSDARG00000071551	xrcc6	78	53.641	ENSETEG00000015333	-	77	53.641	Echinops_telfairi
ENSDARG00000071551	xrcc6	100	56.678	ENSEASG00005001514	XRCC6	99	56.515	Equus_asinus_asinus
ENSDARG00000071551	xrcc6	100	56.515	ENSECAG00000017563	XRCC6	99	57.042	Equus_caballus
ENSDARG00000071551	xrcc6	99	75.246	ENSELUG00000020301	xrcc6	99	75.410	Esox_lucius
ENSDARG00000071551	xrcc6	99	59.217	ENSFALG00000011908	XRCC6	96	59.217	Ficedula_albicollis
ENSDARG00000071551	xrcc6	99	75.698	ENSFHEG00000016833	xrcc6	99	75.041	Fundulus_heteroclitus
ENSDARG00000071551	xrcc6	89	76.834	ENSGMOG00000013524	xrcc6	100	64.715	Gadus_morhua
ENSDARG00000071551	xrcc6	99	59.223	ENSGALG00000011932	XRCC6	99	60.032	Gallus_gallus
ENSDARG00000071551	xrcc6	99	73.191	ENSGAFG00000008130	xrcc6	99	73.191	Gambusia_affinis
ENSDARG00000071551	xrcc6	100	72.358	ENSGACG00000004868	xrcc6	99	72.358	Gasterosteus_aculeatus
ENSDARG00000071551	xrcc6	100	60.749	ENSGAGG00000017518	XRCC6	99	60.912	Gopherus_agassizii
ENSDARG00000071551	xrcc6	99	58.361	ENSGGOG00000015885	XRCC6	97	62.232	Gorilla_gorilla
ENSDARG00000071551	xrcc6	93	75.929	ENSHBUG00000023281	xrcc6	99	75.929	Haplochromis_burtoni
ENSDARG00000071551	xrcc6	100	57.655	ENSHGLG00000018078	XRCC6	99	57.003	Heterocephalus_glaber_female
ENSDARG00000071551	xrcc6	100	57.655	ENSHGLG00100011264	XRCC6	99	57.003	Heterocephalus_glaber_male
ENSDARG00000071551	xrcc6	99	70.328	ENSHCOG00000009821	xrcc6	99	70.492	Hippocampus_comes
ENSDARG00000071551	xrcc6	100	80.984	ENSIPUG00000000767	xrcc6	100	80.984	Ictalurus_punctatus
ENSDARG00000071551	xrcc6	100	57.655	ENSSTOG00000009490	XRCC6	99	57.818	Ictidomys_tridecemlineatus
ENSDARG00000071551	xrcc6	100	53.746	ENSJJAG00000017136	Xrcc6	99	54.959	Jaculus_jaculus
ENSDARG00000071551	xrcc6	99	75.698	ENSKMAG00000002141	xrcc6	99	75.698	Kryptolebias_marmoratus
ENSDARG00000071551	xrcc6	99	73.934	ENSLBEG00000002691	xrcc6	99	73.934	Labrus_bergylta
ENSDARG00000071551	xrcc6	84	74.286	ENSLOCG00000011533	xrcc6	99	74.286	Lepisosteus_oculatus
ENSDARG00000071551	xrcc6	99	58.689	ENSMFAG00000003352	XRCC6	94	63.380	Macaca_fascicularis
ENSDARG00000071551	xrcc6	99	58.689	ENSMMUG00000001856	XRCC6	99	58.361	Macaca_mulatta
ENSDARG00000071551	xrcc6	99	58.689	ENSMNEG00000035076	XRCC6	98	59.963	Macaca_nemestrina
ENSDARG00000071551	xrcc6	99	58.689	ENSMLEG00000019869	XRCC6	99	58.361	Mandrillus_leucophaeus
ENSDARG00000071551	xrcc6	99	73.727	ENSMAMG00000003368	xrcc6	99	73.727	Mastacembelus_armatus
ENSDARG00000071551	xrcc6	96	73.720	ENSMAMG00000003405	xrcc6	97	73.720	Mastacembelus_armatus
ENSDARG00000071551	xrcc6	99	75.041	ENSMZEG00005028080	xrcc6	99	75.369	Maylandia_zebra
ENSDARG00000071551	xrcc6	99	59.385	ENSMGAG00000012146	XRCC6	99	59.709	Meleagris_gallopavo
ENSDARG00000071551	xrcc6	100	57.586	ENSMAUG00000017340	Xrcc6	100	57.586	Mesocricetus_auratus
ENSDARG00000071551	xrcc6	100	58.564	ENSMOCG00000015717	Xrcc6	100	58.564	Microtus_ochrogaster
ENSDARG00000071551	xrcc6	99	72.085	ENSMMOG00000003536	xrcc6	99	72.085	Mola_mola
ENSDARG00000071551	xrcc6	99	73.443	ENSMALG00000013912	xrcc6	95	73.607	Monopterus_albus
ENSDARG00000071551	xrcc6	100	54.812	MGP_CAROLIEiJ_G0020067	Xrcc6	99	54.812	Mus_caroli
ENSDARG00000071551	xrcc6	100	58.401	ENSMUSG00000022471	Xrcc6	99	61.278	Mus_musculus
ENSDARG00000071551	xrcc6	100	58.075	MGP_PahariEiJ_G0020069	Xrcc6	99	58.075	Mus_pahari
ENSDARG00000071551	xrcc6	96	59.455	MGP_SPRETEiJ_G0020967	Xrcc6	99	59.455	Mus_spretus
ENSDARG00000071551	xrcc6	100	56.117	ENSNGAG00000013750	Xrcc6	99	56.117	Nannospalax_galili
ENSDARG00000071551	xrcc6	99	75.698	ENSNBRG00000004125	xrcc6	99	76.026	Neolamprologus_brichardi
ENSDARG00000071551	xrcc6	95	59.966	ENSOPRG00000002386	XRCC6	99	59.966	Ochotona_princeps
ENSDARG00000071551	xrcc6	100	57.886	ENSODEG00000015847	XRCC6	99	57.886	Octodon_degus
ENSDARG00000071551	xrcc6	99	75.205	ENSONIG00000019715	xrcc6	99	75.369	Oreochromis_niloticus
ENSDARG00000071551	xrcc6	69	61.005	ENSOANG00000011328	XRCC6	99	61.005	Ornithorhynchus_anatinus
ENSDARG00000071551	xrcc6	95	58.692	ENSOCUG00000006948	XRCC6	99	57.800	Oryctolagus_cuniculus
ENSDARG00000071551	xrcc6	99	75.534	ENSORLG00020007820	xrcc6	99	75.205	Oryzias_latipes_hni
ENSDARG00000071551	xrcc6	99	75.205	ENSORLG00015006406	xrcc6	99	74.877	Oryzias_latipes_hsok
ENSDARG00000071551	xrcc6	99	75.205	ENSOMEG00000008998	xrcc6	99	75.205	Oryzias_melastigma
ENSDARG00000071551	xrcc6	100	57.003	ENSOGAG00000008821	XRCC6	100	57.166	Otolemur_garnettii
ENSDARG00000071551	xrcc6	92	58.967	ENSPPAG00000037167	XRCC6	99	58.967	Pan_paniscus
ENSDARG00000071551	xrcc6	99	58.361	ENSPTRG00000045824	XRCC6	99	59.863	Pan_troglodytes
ENSDARG00000071551	xrcc6	99	58.361	ENSPTRG00000022548	XRCC6	99	59.863	Pan_troglodytes
ENSDARG00000071551	xrcc6	99	58.525	ENSPANG00000001252	XRCC6	97	63.478	Papio_anubis
ENSDARG00000071551	xrcc6	100	74.141	ENSPKIG00000003974	xrcc6	100	74.141	Paramormyrops_kingsleyae
ENSDARG00000071551	xrcc6	99	72.471	ENSPMGG00000014220	xrcc6	100	72.968	Periophthalmus_magnuspinnatus
ENSDARG00000071551	xrcc6	100	57.586	ENSPEMG00000023446	Xrcc6	99	57.586	Peromyscus_maniculatus_bairdii
ENSDARG00000071551	xrcc6	99	58.224	ENSPCIG00000026409	XRCC6	99	58.388	Phascolarctos_cinereus
ENSDARG00000071551	xrcc6	99	74.877	ENSPFOG00000017173	xrcc6	99	74.220	Poecilia_formosa
ENSDARG00000071551	xrcc6	99	74.384	ENSPLAG00000000562	xrcc6	99	73.727	Poecilia_latipinna
ENSDARG00000071551	xrcc6	99	74.877	ENSPMEG00000018478	xrcc6	99	74.220	Poecilia_mexicana
ENSDARG00000071551	xrcc6	99	74.754	ENSPREG00000020957	xrcc6	93	74.098	Poecilia_reticulata
ENSDARG00000071551	xrcc6	99	51.967	ENSPPYG00000011876	XRCC6	99	51.639	Pongo_abelii
ENSDARG00000071551	xrcc6	100	55.628	ENSPVAG00000001168	XRCC6	99	55.139	Pteropus_vampyrus
ENSDARG00000071551	xrcc6	99	75.205	ENSPNYG00000003815	xrcc6	99	71.406	Pundamilia_nyererei
ENSDARG00000071551	xrcc6	100	57.423	ENSRNOG00000006392	Xrcc6	99	57.423	Rattus_norvegicus
ENSDARG00000071551	xrcc6	99	54.098	ENSRBIG00000039794	XRCC6	98	55.938	Rhinopithecus_bieti
ENSDARG00000071551	xrcc6	99	58.689	ENSRROG00000030297	XRCC6	98	59.402	Rhinopithecus_roxellana
ENSDARG00000071551	xrcc6	67	53.317	ENSSBOG00000024724	-	99	53.317	Saimiri_boliviensis_boliviensis
ENSDARG00000071551	xrcc6	100	57.561	ENSSHAG00000010790	XRCC6	99	57.561	Sarcophilus_harrisii
ENSDARG00000071551	xrcc6	100	76.759	ENSSFOG00015014409	xrcc6	100	77.087	Scleropages_formosus
ENSDARG00000071551	xrcc6	99	76.355	ENSSMAG00000006496	xrcc6	99	76.683	Scophthalmus_maximus
ENSDARG00000071551	xrcc6	99	75.369	ENSSDUG00000007542	xrcc6	99	75.698	Seriola_dumerili
ENSDARG00000071551	xrcc6	99	75.369	ENSSLDG00000009974	xrcc6	99	75.698	Seriola_lalandi_dorsalis
ENSDARG00000071551	xrcc6	100	61.401	ENSSPUG00000012086	XRCC6	99	61.238	Sphenodon_punctatus
ENSDARG00000071551	xrcc6	99	76.923	ENSSPAG00000015199	xrcc6	99	76.759	Stegastes_partitus
ENSDARG00000071551	xrcc6	100	59.547	ENSTGUG00000009852	-	100	59.547	Taeniopygia_guttata
ENSDARG00000071551	xrcc6	99	71.875	ENSTRUG00000017070	xrcc6	99	71.875	Takifugu_rubripes
ENSDARG00000071551	xrcc6	96	71.356	ENSTNIG00000012947	xrcc6	99	71.356	Tetraodon_nigroviridis
ENSDARG00000071551	xrcc6	96	54.872	ENSTBEG00000011736	XRCC6	99	54.872	Tupaia_belangeri
ENSDARG00000071551	xrcc6	100	47.883	ENSTTRG00000006749	XRCC6	99	47.883	Tursiops_truncatus
ENSDARG00000071551	xrcc6	99	74.713	ENSXMAG00000009691	xrcc6	99	74.056	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000723	telomere maintenance	21873635.	IBA	Process
GO:0000723	telomere maintenance	-	IEA	Process
GO:0000784	nuclear chromosome, telomeric region	21873635.	IBA	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003684	damaged DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	21873635.	IBA	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	-	IEA	Process
GO:0010212	response to ionizing radiation	17630212.	IMP	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0042162	telomeric DNA binding	-	IEA	Function
GO:0043564	Ku70:Ku80 complex	21873635.	IBA	Component
GO:0043564	Ku70:Ku80 complex	-	IEA	Component
GO:0071480	cellular response to gamma radiation	21873635.	IBA	Process
GO:0071481	cellular response to X-ray	21873635.	IBA	Process