EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000071573 (Gene tree)
Gene ID
563948
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
5512 bases
Position
chr12:13331526-13337037
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000096681LSMPF01423.221.6e-2011
ENSDARP00000116972LSMPF01423.228.9e-1711
ENSDARP00000121634LSMPF01423.228.9e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000138363-758--- (aa)--
ENSDART00000139786-478-ENSDARP0000011697262 (aa)-E9QFA0
ENSDART00000105903-739-ENSDARP0000009668191 (aa)-A7E2L8
ENSDART00000134356-516-ENSDARP0000012163462 (aa)-E9QFA0
Gene Model
Click here to download ENSDARG00000071573's gene model file
Pathways
Pathway IDPathway NameSource
dre03018RNA degradationKEGG
dre03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000071573's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000071573lsm57739.583ENSDARG00000033175snrpe8839.583
ENSDARG00000071573lsm58236.000ENSDARG00000089663lsm37436.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000071573lsm510096.774ENSG00000106355LSM510096.774Homo_sapiens
ENSDARG00000071573lsm510098.387ENSAPOG00000011743LSM510098.387Acanthochromis_polyacanthus
ENSDARG00000071573lsm510098.387ENSAPOG00000020779LSM510095.604Acanthochromis_polyacanthus
ENSDARG00000071573lsm510096.774ENSAMEG00000006700LSM510094.505Ailuropoda_melanoleuca
ENSDARG00000071573lsm57395.556ENSACIG00000019185lsm58095.556Amphilophus_citrinellus
ENSDARG00000071573lsm510098.387ENSAOCG00000001636lsm510095.604Amphiprion_ocellaris
ENSDARG00000071573lsm510098.387ENSAPEG00000008201lsm510098.387Amphiprion_percula
ENSDARG00000071573lsm510098.387ENSAPEG00000008151lsm510095.604Amphiprion_percula
ENSDARG00000071573lsm59095.122ENSATEG00000020470lsm57695.556Anabas_testudineus
ENSDARG00000071573lsm59796.667ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSDARG00000071573lsm56292.857ENSACAG00000009530LSM59392.857Anolis_carolinensis
ENSDARG00000071573lsm510096.774ENSANAG00000034409-10095.604Aotus_nancymaae
ENSDARG00000071573lsm510087.097ENSANAG00000037758-10073.626Aotus_nancymaae
ENSDARG00000071573lsm510091.935ENSANAG00000024192-9492.222Aotus_nancymaae
ENSDARG00000071573lsm510098.387ENSACLG00000012891lsm510096.591Astatotilapia_calliptera
ENSDARG00000071573lsm510084.043ENSAMXG00000035543lsm510084.043Astyanax_mexicanus
ENSDARG00000071573lsm55375.000ENSBTAG00000052014-6375.000Bos_taurus
ENSDARG00000071573lsm510096.774ENSBTAG00000002332LSM510094.505Bos_taurus
ENSDARG00000071573lsm510079.032WBGene00003079lsm-510074.725Caenorhabditis_elegans
ENSDARG00000071573lsm510083.871ENSCJAG00000005678-10083.333Callithrix_jacchus
ENSDARG00000071573lsm510096.774ENSCJAG00000047379LSM58184.615Callithrix_jacchus
ENSDARG00000071573lsm510095.161ENSCAFG00000019261-10093.407Canis_familiaris
ENSDARG00000071573lsm55586.000ENSCAFG00000030781-5886.000Canis_familiaris
ENSDARG00000071573lsm510096.774ENSCAFG00020004946LSM510094.505Canis_lupus_dingo
ENSDARG00000071573lsm510096.774ENSCHIG00000024539LSM510094.505Capra_hircus
ENSDARG00000071573lsm58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSDARG00000071573lsm510093.548ENSCHIG00000004079-10092.308Capra_hircus
ENSDARG00000071573lsm510069.231ENSTSYG00000036637-10069.231Carlito_syrichta
ENSDARG00000071573lsm510088.710ENSTSYG00000026530-9178.022Carlito_syrichta
ENSDARG00000071573lsm510082.418ENSTSYG00000028728-10082.418Carlito_syrichta
ENSDARG00000071573lsm510096.774ENSTSYG00000006449-10094.505Carlito_syrichta
ENSDARG00000071573lsm510088.710ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSDARG00000071573lsm510096.774ENSCPOG00000036386LSM510094.505Cavia_porcellus
ENSDARG00000071573lsm510096.774ENSCCAG00000037808-10094.505Cebus_capucinus
ENSDARG00000071573lsm510090.323ENSCCAG00000032792-10075.824Cebus_capucinus
ENSDARG00000071573lsm510095.161ENSCCAG00000000821-10093.407Cebus_capucinus
ENSDARG00000071573lsm59783.333ENSCCAG00000037334-10064.835Cebus_capucinus
ENSDARG00000071573lsm510095.161ENSCCAG00000032123-10092.308Cebus_capucinus
ENSDARG00000071573lsm510096.774ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSDARG00000071573lsm59983.333ENSCATG00000014790-9590.909Cercocebus_atys
ENSDARG00000071573lsm510080.220ENSCLAG00000005062-9080.220Chinchilla_lanigera
ENSDARG00000071573lsm510096.774ENSCLAG00000000202LSM510094.505Chinchilla_lanigera
ENSDARG00000071573lsm58294.667ENSCHOG00000005335LSM59994.667Choloepus_hoffmanni
ENSDARG00000071573lsm510096.774ENSCPBG00000013685LSM510094.505Chrysemys_picta_bellii
ENSDARG00000071573lsm510087.097ENSCING00000020625-9787.209Ciona_intestinalis
ENSDARG00000071573lsm510087.097ENSCSAVG00000001439-10086.364Ciona_savignyi
ENSDARG00000071573lsm510096.774ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSDARG00000071573lsm510096.774ENSCGRG00001015461Lsm510094.505Cricetulus_griseus_chok1gshd
ENSDARG00000071573lsm510096.774ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSDARG00000071573lsm57395.556ENSCSEG00000015286lsm57695.556Cynoglossus_semilaevis
ENSDARG00000071573lsm510098.387ENSCVAG00000004262lsm510096.703Cyprinodon_variegatus
ENSDARG00000071573lsm510096.774ENSDNOG00000034958LSM510094.505Dasypus_novemcinctus
ENSDARG00000071573lsm59486.207ENSDNOG00000049495-9683.908Dasypus_novemcinctus
ENSDARG00000071573lsm510096.774ENSDORG00000009422Lsm510094.505Dipodomys_ordii
ENSDARG00000071573lsm59885.246FBgn0035675CG66109581.395Drosophila_melanogaster
ENSDARG00000071573lsm59862.921ENSETEG00000000777-9962.921Echinops_telfairi
ENSDARG00000071573lsm510075.806ENSETEG00000010651-9976.404Echinops_telfairi
ENSDARG00000071573lsm59974.444ENSETEG00000001469-9974.444Echinops_telfairi
ENSDARG00000071573lsm510075.806ENSETEG00000016074-9878.378Echinops_telfairi
ENSDARG00000071573lsm510096.774ENSETEG00000018068LSM510094.505Echinops_telfairi
ENSDARG00000071573lsm510095.161ENSEBUG00000008540lsm510092.308Eptatretus_burgeri
ENSDARG00000071573lsm510096.774ENSEASG00005003500LSM510094.505Equus_asinus_asinus
ENSDARG00000071573lsm510080.220ENSECAG00000018445LSM510080.220Equus_caballus
ENSDARG00000071573lsm59491.379ENSEEUG00000004102LSM59791.379Erinaceus_europaeus
ENSDARG00000071573lsm5100100.000ENSELUG00000007792lsm510097.802Esox_lucius
ENSDARG00000071573lsm510096.774ENSFCAG00000000230LSM510094.505Felis_catus
ENSDARG00000071573lsm510096.774ENSFALG00000001892LSM59297.368Ficedula_albicollis
ENSDARG00000071573lsm510096.774ENSFDAG00000008767LSM510094.505Fukomys_damarensis
ENSDARG00000071573lsm510069.355ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSDARG00000071573lsm510083.871ENSFHEG00000004011lsm510076.087Fundulus_heteroclitus
ENSDARG00000071573lsm59898.361ENSGMOG00000018235lsm510096.667Gadus_morhua
ENSDARG00000071573lsm510096.774ENSGALG00000041625LSM510094.505Gallus_gallus
ENSDARG00000071573lsm510098.387ENSGAFG00000016824lsm510098.387Gambusia_affinis
ENSDARG00000071573lsm510098.387ENSGACG00000005528lsm510095.604Gasterosteus_aculeatus
ENSDARG00000071573lsm510096.774ENSGAGG00000015593LSM510094.505Gopherus_agassizii
ENSDARG00000071573lsm510096.774ENSGGOG00000043469LSM510094.505Gorilla_gorilla
ENSDARG00000071573lsm510098.387ENSHBUG00000013773lsm510096.591Haplochromis_burtoni
ENSDARG00000071573lsm510096.774ENSHGLG00000011765LSM510094.505Heterocephalus_glaber_female
ENSDARG00000071573lsm510096.774ENSHGLG00100015610LSM510091.209Heterocephalus_glaber_male
ENSDARG00000071573lsm57393.333ENSHCOG00000008288lsm57693.333Hippocampus_comes
ENSDARG00000071573lsm5100100.000ENSIPUG00000021095LSM510096.703Ictalurus_punctatus
ENSDARG00000071573lsm510083.871ENSSTOG00000033886-10077.528Ictidomys_tridecemlineatus
ENSDARG00000071573lsm510096.774ENSSTOG00000012662LSM510094.505Ictidomys_tridecemlineatus
ENSDARG00000071573lsm58787.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSDARG00000071573lsm59581.356ENSJJAG00000016144-9267.033Jaculus_jaculus
ENSDARG00000071573lsm510096.774ENSJJAG00000012145-10092.308Jaculus_jaculus
ENSDARG00000071573lsm510096.774ENSKMAG00000021861lsm510094.505Kryptolebias_marmoratus
ENSDARG00000071573lsm510087.912ENSLBEG00000009235LSM57087.912Labrus_bergylta
ENSDARG00000071573lsm56282.143ENSLBEG00000017379lsm59282.143Labrus_bergylta
ENSDARG00000071573lsm510098.387ENSLACG00000022448LSM510096.703Latimeria_chalumnae
ENSDARG00000071573lsm5100100.000ENSLOCG00000012903lsm510097.802Lepisosteus_oculatus
ENSDARG00000071573lsm59484.483ENSLAFG00000027938-10071.429Loxodonta_africana
ENSDARG00000071573lsm510096.774ENSLAFG00000029579LSM510094.505Loxodonta_africana
ENSDARG00000071573lsm55389.583ENSMFAG00000031187-8189.583Macaca_fascicularis
ENSDARG00000071573lsm510096.774ENSMFAG00000038508LSM510094.505Macaca_fascicularis
ENSDARG00000071573lsm510095.161ENSMFAG00000030152-10092.308Macaca_fascicularis
ENSDARG00000071573lsm510083.871ENSMMUG00000039822-10084.444Macaca_mulatta
ENSDARG00000071573lsm510095.161ENSMMUG00000030131-10092.308Macaca_mulatta
ENSDARG00000071573lsm55784.615ENSMMUG00000045129-8184.615Macaca_mulatta
ENSDARG00000071573lsm510096.774ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSDARG00000071573lsm510095.161ENSMNEG00000037935-10092.308Macaca_nemestrina
ENSDARG00000071573lsm510096.774ENSMLEG00000024945LSM510094.505Mandrillus_leucophaeus
ENSDARG00000071573lsm510082.258ENSMLEG00000034037-10083.146Mandrillus_leucophaeus
ENSDARG00000071573lsm510095.161ENSMAMG00000012869lsm510092.308Mastacembelus_armatus
ENSDARG00000071573lsm510098.387ENSMZEG00005019554lsm510096.591Maylandia_zebra
ENSDARG00000071573lsm510096.774ENSMGAG00000012117LSM510094.505Meleagris_gallopavo
ENSDARG00000071573lsm510096.774ENSMAUG00000012222Lsm510094.505Mesocricetus_auratus
ENSDARG00000071573lsm510096.774ENSMAUG00000008132-10093.407Mesocricetus_auratus
ENSDARG00000071573lsm510096.774ENSMICG00000005353LSM510094.505Microcebus_murinus
ENSDARG00000071573lsm59795.000ENSMICG00000033928-7895.000Microcebus_murinus
ENSDARG00000071573lsm510096.774ENSMOCG00000012018Lsm510094.505Microtus_ochrogaster
ENSDARG00000071573lsm510098.387ENSMMOG00000004026lsm58798.684Mola_mola
ENSDARG00000071573lsm510096.774ENSMODG00000013274-10096.774Monodelphis_domestica
ENSDARG00000071573lsm510095.161ENSMALG00000010343lsm510095.161Monopterus_albus
ENSDARG00000071573lsm510096.774MGP_CAROLIEiJ_G0028421Lsm510094.505Mus_caroli
ENSDARG00000071573lsm510096.774ENSMUSG00000091625Lsm510094.505Mus_musculus
ENSDARG00000071573lsm510096.774MGP_PahariEiJ_G0022171Lsm510094.505Mus_pahari
ENSDARG00000071573lsm510096.774MGP_SPRETEiJ_G0029423Lsm510094.505Mus_spretus
ENSDARG00000071573lsm510096.774ENSMLUG00000017028LSM510094.505Myotis_lucifugus
ENSDARG00000071573lsm510096.774ENSNGAG00000024142Lsm510094.505Nannospalax_galili
ENSDARG00000071573lsm59974.444ENSNGAG00000022569-9674.444Nannospalax_galili
ENSDARG00000071573lsm510083.871ENSNGAG00000017707-10083.871Nannospalax_galili
ENSDARG00000071573lsm55189.130ENSNBRG00000009964LSM59889.130Neolamprologus_brichardi
ENSDARG00000071573lsm59298.246ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSDARG00000071573lsm510096.774ENSNLEG00000015268LSM510094.505Nomascus_leucogenys
ENSDARG00000071573lsm510096.774ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSDARG00000071573lsm510096.774ENSODEG00000019072-10094.505Octodon_degus
ENSDARG00000071573lsm510096.774ENSODEG00000008258-10094.505Octodon_degus
ENSDARG00000071573lsm59456.897ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSDARG00000071573lsm510096.774ENSOCUG00000029043LSM510094.505Oryctolagus_cuniculus
ENSDARG00000071573lsm510096.774ENSORLG00000027725lsm55894.505Oryzias_latipes
ENSDARG00000071573lsm510096.774ENSORLG00020003019lsm59187.356Oryzias_latipes_hni
ENSDARG00000071573lsm510096.774ENSORLG00015003338lsm510094.505Oryzias_latipes_hsok
ENSDARG00000071573lsm510096.774ENSOMEG00000001078lsm510093.407Oryzias_melastigma
ENSDARG00000071573lsm510096.774ENSOGAG00000013892LSM510094.505Otolemur_garnettii
ENSDARG00000071573lsm510096.774ENSOARG00000006944LSM510094.505Ovis_aries
ENSDARG00000071573lsm510096.774ENSPPAG00000003697-10094.505Pan_paniscus
ENSDARG00000071573lsm510096.774ENSPPRG00000002550LSM510094.505Panthera_pardus
ENSDARG00000071573lsm510096.774ENSPTIG00000015604LSM510094.505Panthera_tigris_altaica
ENSDARG00000071573lsm510096.774ENSPTRG00000019057LSM510094.505Pan_troglodytes
ENSDARG00000071573lsm510078.022ENSPTRG00000049488-10080.220Pan_troglodytes
ENSDARG00000071573lsm510083.871ENSPANG00000032538-10084.444Papio_anubis
ENSDARG00000071573lsm510095.161ENSPANG00000033477-10091.209Papio_anubis
ENSDARG00000071573lsm510096.774ENSPANG00000032179-10094.505Papio_anubis
ENSDARG00000071573lsm5100100.000ENSPKIG00000011910lsm510097.802Paramormyrops_kingsleyae
ENSDARG00000071573lsm59796.667ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSDARG00000071573lsm510098.387ENSPMGG00000011699lsm510098.387Periophthalmus_magnuspinnatus
ENSDARG00000071573lsm510070.968ENSPEMG00000022375-10067.033Peromyscus_maniculatus_bairdii
ENSDARG00000071573lsm55291.489ENSPEMG00000019994-8091.489Peromyscus_maniculatus_bairdii
ENSDARG00000071573lsm510098.387ENSPFOG00000001433lsm510096.703Poecilia_formosa
ENSDARG00000071573lsm510098.387ENSPLAG00000009665lsm510096.703Poecilia_latipinna
ENSDARG00000071573lsm510098.387ENSPMEG00000022265lsm510096.703Poecilia_mexicana
ENSDARG00000071573lsm510098.387ENSPREG00000022452lsm510098.387Poecilia_reticulata
ENSDARG00000071573lsm510091.935ENSPPYG00000017661LSM510091.209Pongo_abelii
ENSDARG00000071573lsm58995.062ENSPCAG00000013740LSM510095.062Procavia_capensis
ENSDARG00000071573lsm510096.774ENSPVAG00000009786LSM510094.505Pteropus_vampyrus
ENSDARG00000071573lsm510098.387ENSPNYG00000022236lsm510096.591Pundamilia_nyererei
ENSDARG00000071573lsm5100100.000ENSPNAG00000001887lsm510096.703Pygocentrus_nattereri
ENSDARG00000071573lsm510096.774ENSRNOG00000042126Lsm510094.505Rattus_norvegicus
ENSDARG00000071573lsm510095.238ENSRNOG00000027305AABR07065089.110091.304Rattus_norvegicus
ENSDARG00000071573lsm510095.161ENSRBIG00000024431-10093.407Rhinopithecus_bieti
ENSDARG00000071573lsm510096.774ENSRBIG00000030340-10094.505Rhinopithecus_bieti
ENSDARG00000071573lsm510096.774ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSDARG00000071573lsm510096.774ENSRBIG00000030714-10094.505Rhinopithecus_bieti
ENSDARG00000071573lsm510096.774ENSRROG00000023884-10094.505Rhinopithecus_roxellana
ENSDARG00000071573lsm510096.774ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSDARG00000071573lsm510096.774ENSRROG00000004655-10094.505Rhinopithecus_roxellana
ENSDARG00000071573lsm59449.206YER146W-8848.780Saccharomyces_cerevisiae
ENSDARG00000071573lsm510085.484ENSSBOG00000034794-10072.527Saimiri_boliviensis_boliviensis
ENSDARG00000071573lsm510096.774ENSSBOG00000012312LSM510094.505Saimiri_boliviensis_boliviensis
ENSDARG00000071573lsm510095.161ENSSBOG00000019124-10092.308Saimiri_boliviensis_boliviensis
ENSDARG00000071573lsm5100100.000ENSSFOG00015010099lsm510097.802Scleropages_formosus
ENSDARG00000071573lsm57395.556ENSSMAG00000007895lsm57695.556Scophthalmus_maximus
ENSDARG00000071573lsm510098.387ENSSDUG00000010762lsm510098.387Seriola_dumerili
ENSDARG00000071573lsm510098.387ENSSLDG00000025242lsm510096.703Seriola_lalandi_dorsalis
ENSDARG00000071573lsm59475.862ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSDARG00000071573lsm510065.934ENSSARG00000003330LSM510065.934Sorex_araneus
ENSDARG00000071573lsm510095.161ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSDARG00000071573lsm57395.556ENSSPAG00000005435lsm57695.556Stegastes_partitus
ENSDARG00000071573lsm57684.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSDARG00000071573lsm510096.774ENSSSCG00000026064-10094.505Sus_scrofa
ENSDARG00000071573lsm510096.774ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSDARG00000071573lsm58984.884ENSTRUG00000017749lsm56784.884Takifugu_rubripes
ENSDARG00000071573lsm510096.774ENSTNIG00000008695lsm510095.455Tetraodon_nigroviridis
ENSDARG00000071573lsm510096.774ENSTBEG00000004876LSM510094.505Tupaia_belangeri
ENSDARG00000071573lsm510096.774ENSTTRG00000004237LSM510094.505Tursiops_truncatus
ENSDARG00000071573lsm55784.615ENSUAMG00000009786LSM56884.615Ursus_americanus
ENSDARG00000071573lsm59896.721ENSUMAG00000002625LSM56593.407Ursus_maritimus
ENSDARG00000071573lsm510096.774ENSVPAG00000009985LSM510094.505Vicugna_pacos
ENSDARG00000071573lsm510096.774ENSVVUG00000021311LSM510094.505Vulpes_vulpes
ENSDARG00000071573lsm59092.683ENSXETG00000026465lsm510092.683Xenopus_tropicalis
ENSDARG00000071573lsm510098.387ENSXCOG00000015348lsm510098.387Xiphophorus_couchianus
ENSDARG00000071573lsm510098.387ENSXMAG00000029988lsm510096.703Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-IEAComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005688U6 snRNP21873635.IBAComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0046540U4/U6 x U5 tri-snRNP complex21873635.IBAComponent
GO:1990726Lsm1-7-Pat1 complex21873635.IBAComponent

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