EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000071727 (Gene tree)
Gene ID: 407641
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: si:dkey-37o8.1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 2681 bases
Position: chr24:10898671-10901351
Accession: ZDB-GENE-030131-5667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000097050	GTP_EFTU	PF00009.27	1.4e-52	1	1
ENSDARP00000097050	MMR_HSR1	PF01926.23	6e-06	1	1
ENSDARP00000097050	GTP_EFTU_D2	PF03144.25	4.9e-11	1	1
ENSDARP00000097050	GTP_EFTU_D3	PF03143.17	4e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000106272	-	1705	-	ENSDARP00000097050	483 (aa)	-	F1QQW9

Gene Model

Click here to download ENSDARG00000071727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000071727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000071727	si:dkey-37o8.1	92	37.444	ENSDARG00000098627	gspt1l	75	37.444
ENSDARG00000071727	si:dkey-37o8.1	95	69.913	ENSDARG00000039502	eef1a1a	99	76.585
ENSDARG00000071727	si:dkey-37o8.1	95	69.264	ENSDARG00000020850	eef1a1l1	100	69.264
ENSDARG00000071727	si:dkey-37o8.1	91	37.415	ENSDARG00000031048	gspt1	76	37.220
ENSDARG00000071727	si:dkey-37o8.1	90	39.770	ENSDARG00000036778	hbs1l	64	39.679
ENSDARG00000071727	si:dkey-37o8.1	95	70.306	ENSDARG00000069951	eef1a1b	98	70.306
ENSDARG00000071727	si:dkey-37o8.1	94	70.961	ENSDARG00000006838	eef1a2	99	70.961

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000071727	si:dkey-37o8.1	94	81.637	ENSAPOG00000016459	si:dkey-37o8.1	99	81.637	Acanthochromis_polyacanthus
ENSDARG00000071727	si:dkey-37o8.1	95	77.074	ENSACIG00000020985	si:dkey-37o8.1	86	77.074	Amphilophus_citrinellus
ENSDARG00000071727	si:dkey-37o8.1	95	82.533	ENSAOCG00000002663	si:dkey-37o8.1	100	82.533	Amphiprion_ocellaris
ENSDARG00000071727	si:dkey-37o8.1	95	82.533	ENSAPEG00000012670	si:dkey-37o8.1	100	82.533	Amphiprion_percula
ENSDARG00000071727	si:dkey-37o8.1	87	82.938	ENSATEG00000002217	si:dkey-37o8.1	99	82.938	Anabas_testudineus
ENSDARG00000071727	si:dkey-37o8.1	92	82.393	ENSACLG00000003519	si:dkey-37o8.1	97	82.393	Astatotilapia_calliptera
ENSDARG00000071727	si:dkey-37o8.1	95	87.555	ENSAMXG00000002728	si:dkey-37o8.1	100	87.555	Astyanax_mexicanus
ENSDARG00000071727	si:dkey-37o8.1	93	71.460	ENSCPBG00000020570	-	89	71.460	Chrysemys_picta_bellii
ENSDARG00000071727	si:dkey-37o8.1	95	74.783	ENSCSEG00000019807	si:dkey-37o8.1	100	73.978	Cynoglossus_semilaevis
ENSDARG00000071727	si:dkey-37o8.1	94	81.938	ENSCVAG00000009828	si:dkey-37o8.1	99	81.938	Cyprinodon_variegatus
ENSDARG00000071727	si:dkey-37o8.1	95	82.533	ENSELUG00000007495	si:dkey-37o8.1	100	82.533	Esox_lucius
ENSDARG00000071727	si:dkey-37o8.1	95	79.913	ENSFHEG00000017452	si:dkey-37o8.1	100	79.913	Fundulus_heteroclitus
ENSDARG00000071727	si:dkey-37o8.1	94	76.549	ENSGMOG00000006122	si:dkey-37o8.1	99	76.549	Gadus_morhua
ENSDARG00000071727	si:dkey-37o8.1	93	76.000	ENSGAFG00000000367	si:dkey-37o8.1	99	76.000	Gambusia_affinis
ENSDARG00000071727	si:dkey-37o8.1	95	79.039	ENSGACG00000004505	si:dkey-37o8.1	100	79.039	Gasterosteus_aculeatus
ENSDARG00000071727	si:dkey-37o8.1	93	72.566	ENSGAGG00000007724	-	96	75.000	Gopherus_agassizii
ENSDARG00000071727	si:dkey-37o8.1	92	82.619	ENSHBUG00000015515	si:dkey-37o8.1	97	82.619	Haplochromis_burtoni
ENSDARG00000071727	si:dkey-37o8.1	92	74.944	ENSHCOG00000001215	si:dkey-37o8.1	98	74.944	Hippocampus_comes
ENSDARG00000071727	si:dkey-37o8.1	94	86.344	ENSIPUG00000004067	si:dkey-37o8.1	99	86.344	Ictalurus_punctatus
ENSDARG00000071727	si:dkey-37o8.1	95	81.441	ENSKMAG00000015910	si:dkey-37o8.1	100	81.441	Kryptolebias_marmoratus
ENSDARG00000071727	si:dkey-37o8.1	95	82.751	ENSLBEG00000021334	si:dkey-37o8.1	90	82.751	Labrus_bergylta
ENSDARG00000071727	si:dkey-37o8.1	94	77.143	ENSLACG00000003948	si:dkey-37o8.1	99	77.143	Latimeria_chalumnae
ENSDARG00000071727	si:dkey-37o8.1	94	82.198	ENSLOCG00000011245	si:dkey-37o8.1	99	82.198	Lepisosteus_oculatus
ENSDARG00000071727	si:dkey-37o8.1	93	71.269	ENSMAMG00000009907	si:dkey-37o8.1	94	71.269	Mastacembelus_armatus
ENSDARG00000071727	si:dkey-37o8.1	92	82.393	ENSMZEG00005018358	si:dkey-37o8.1	97	82.393	Maylandia_zebra
ENSDARG00000071727	si:dkey-37o8.1	93	81.292	ENSMMOG00000004111	si:dkey-37o8.1	98	81.292	Mola_mola
ENSDARG00000071727	si:dkey-37o8.1	90	75.114	ENSMALG00000017152	si:dkey-37o8.1	99	75.114	Monopterus_albus
ENSDARG00000071727	si:dkey-37o8.1	92	82.619	ENSNBRG00000013552	si:dkey-37o8.1	97	82.619	Neolamprologus_brichardi
ENSDARG00000071727	si:dkey-37o8.1	92	82.167	ENSONIG00000006165	si:dkey-37o8.1	97	82.167	Oreochromis_niloticus
ENSDARG00000071727	si:dkey-37o8.1	95	82.096	ENSORLG00000019066	si:dkey-37o8.1	100	82.096	Oryzias_latipes
ENSDARG00000071727	si:dkey-37o8.1	95	82.096	ENSORLG00020008094	si:dkey-37o8.1	100	82.096	Oryzias_latipes_hni
ENSDARG00000071727	si:dkey-37o8.1	95	81.878	ENSORLG00015008410	si:dkey-37o8.1	100	81.878	Oryzias_latipes_hsok
ENSDARG00000071727	si:dkey-37o8.1	95	82.751	ENSOMEG00000001868	si:dkey-37o8.1	100	82.751	Oryzias_melastigma
ENSDARG00000071727	si:dkey-37o8.1	95	81.481	ENSPKIG00000017246	si:dkey-37o8.1	100	81.481	Paramormyrops_kingsleyae
ENSDARG00000071727	si:dkey-37o8.1	56	66.787	ENSPSIG00000008080	-	98	66.787	Pelodiscus_sinensis
ENSDARG00000071727	si:dkey-37o8.1	95	81.441	ENSPFOG00000013173	si:dkey-37o8.1	100	81.441	Poecilia_formosa
ENSDARG00000071727	si:dkey-37o8.1	95	80.349	ENSPLAG00000010405	si:dkey-37o8.1	100	80.349	Poecilia_latipinna
ENSDARG00000071727	si:dkey-37o8.1	95	81.441	ENSPMEG00000015233	si:dkey-37o8.1	100	81.441	Poecilia_mexicana
ENSDARG00000071727	si:dkey-37o8.1	94	81.319	ENSPREG00000006280	si:dkey-37o8.1	100	81.319	Poecilia_reticulata
ENSDARG00000071727	si:dkey-37o8.1	92	81.941	ENSPNYG00000002059	si:dkey-37o8.1	97	81.941	Pundamilia_nyererei
ENSDARG00000071727	si:dkey-37o8.1	95	87.336	ENSPNAG00000009990	si:dkey-37o8.1	100	87.336	Pygocentrus_nattereri
ENSDARG00000071727	si:dkey-37o8.1	92	82.735	ENSSFOG00015019070	si:dkey-37o8.1	98	82.735	Scleropages_formosus
ENSDARG00000071727	si:dkey-37o8.1	93	82.667	ENSSMAG00000016143	si:dkey-37o8.1	99	82.667	Scophthalmus_maximus
ENSDARG00000071727	si:dkey-37o8.1	95	82.096	ENSSDUG00000009163	si:dkey-37o8.1	100	82.096	Seriola_dumerili
ENSDARG00000071727	si:dkey-37o8.1	95	81.878	ENSSLDG00000023761	si:dkey-37o8.1	100	81.878	Seriola_lalandi_dorsalis
ENSDARG00000071727	si:dkey-37o8.1	92	71.267	ENSSPUG00000007467	-	96	71.526	Sphenodon_punctatus
ENSDARG00000071727	si:dkey-37o8.1	95	83.406	ENSSPAG00000013856	si:dkey-37o8.1	100	83.406	Stegastes_partitus
ENSDARG00000071727	si:dkey-37o8.1	91	82.500	ENSTRUG00000009006	si:dkey-37o8.1	98	82.500	Takifugu_rubripes
ENSDARG00000071727	si:dkey-37o8.1	92	82.393	ENSTNIG00000017138	si:dkey-37o8.1	95	82.393	Tetraodon_nigroviridis
ENSDARG00000071727	si:dkey-37o8.1	91	73.121	ENSXETG00000017744	42Sp50	98	71.586	Xenopus_tropicalis
ENSDARG00000071727	si:dkey-37o8.1	94	80.879	ENSXCOG00000012296	si:dkey-37o8.1	100	81.319	Xiphophorus_couchianus
ENSDARG00000071727	si:dkey-37o8.1	95	81.441	ENSXMAG00000001998	si:dkey-37o8.1	100	81.441	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003746	translation elongation factor activity	21873635.	IBA	Function
GO:0003746	translation elongation factor activity	-	IEA	Function
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0006412	translation	21873635.	IBA	Process
GO:0006412	translation	-	IEA	Process
GO:0006414	translational elongation	21873635.	IBA	Process
GO:0006414	translational elongation	-	IEA	Process