EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000073721 (Gene tree)
Gene ID: 563175
Gene Symbol: smarcad1b
Alias: si:dkey-76p7.6
Full Name: SWI/SNF-related%2C matrix-associated actin-dependent regulator of chromatin%2C subfamily a%2C containing DEAD/H box 1 b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 35100 bases
Position: chr10:17552733-17587832
Accession: ZDB-GENE-091113-61
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000104253	ResIII	PF04851.15	2.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000113101	-	3464	XM_005155635	ENSDARP00000104253	954 (aa)	XP_005155692	E7F1C4
ENSDART00000139113	-	598	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000073721's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000073721's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000073721	smarcad1b	51	31.810	ENSDARG00000092134	rad54b	75	31.478
ENSDARG00000073721	smarcad1b	80	61.450	ENSDARG00000014041	smarcad1a	87	59.552
ENSDARG00000073721	smarcad1b	57	33.851	ENSDARG00000057738	hells	67	33.851

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000073721	smarcad1b	82	59.137	ENSG00000163104	SMARCAD1	100	66.275	Homo_sapiens
ENSDARG00000073721	smarcad1b	81	73.888	ENSAPOG00000011446	smarcad1a	70	76.651	Acanthochromis_polyacanthus
ENSDARG00000073721	smarcad1b	82	59.645	ENSAMEG00000005844	SMARCAD1	78	58.426	Ailuropoda_melanoleuca
ENSDARG00000073721	smarcad1b	82	65.557	ENSACIG00000018326	smarcad1a	89	75.710	Amphilophus_citrinellus
ENSDARG00000073721	smarcad1b	81	73.888	ENSAOCG00000019762	smarcad1a	70	76.344	Amphiprion_ocellaris
ENSDARG00000073721	smarcad1b	83	73.745	ENSAPEG00000003889	smarcad1a	70	76.190	Amphiprion_percula
ENSDARG00000073721	smarcad1b	80	72.507	ENSATEG00000015608	smarcad1a	76	77.287	Anabas_testudineus
ENSDARG00000073721	smarcad1b	98	52.347	ENSAPLG00000004630	SMARCAD1	82	59.273	Anas_platyrhynchos
ENSDARG00000073721	smarcad1b	82	59.010	ENSANAG00000020488	SMARCAD1	88	57.811	Aotus_nancymaae
ENSDARG00000073721	smarcad1b	85	63.647	ENSACLG00000017063	smarcad1a	64	75.422	Astatotilapia_calliptera
ENSDARG00000073721	smarcad1b	99	66.459	ENSAMXG00000019130	smarcad1b	99	65.249	Astyanax_mexicanus
ENSDARG00000073721	smarcad1b	74	66.291	ENSAMXG00000015470	smarcad1a	92	69.572	Astyanax_mexicanus
ENSDARG00000073721	smarcad1b	82	58.965	ENSBTAG00000017061	SMARCAD1	78	57.772	Bos_taurus
ENSDARG00000073721	smarcad1b	68	40.971	WBGene00010845	M03C11.8	66	40.875	Caenorhabditis_elegans
ENSDARG00000073721	smarcad1b	82	59.137	ENSCJAG00000006778	SMARCAD1	78	57.934	Callithrix_jacchus
ENSDARG00000073721	smarcad1b	82	59.772	ENSCAFG00000010026	SMARCAD1	78	58.549	Canis_familiaris
ENSDARG00000073721	smarcad1b	82	59.772	ENSCAFG00020003994	SMARCAD1	90	58.549	Canis_lupus_dingo
ENSDARG00000073721	smarcad1b	82	59.241	ENSCHIG00000012905	SMARCAD1	78	58.037	Capra_hircus
ENSDARG00000073721	smarcad1b	82	59.137	ENSTSYG00000002706	SMARCAD1	78	58.057	Carlito_syrichta
ENSDARG00000073721	smarcad1b	80	52.157	ENSCAPG00000016744	SMARCAD1	91	49.584	Cavia_aperea
ENSDARG00000073721	smarcad1b	82	59.415	ENSCPOG00000011398	SMARCAD1	78	58.076	Cavia_porcellus
ENSDARG00000073721	smarcad1b	82	59.137	ENSCCAG00000022264	SMARCAD1	100	66.443	Cebus_capucinus
ENSDARG00000073721	smarcad1b	82	59.137	ENSCATG00000035663	SMARCAD1	90	57.934	Cercocebus_atys
ENSDARG00000073721	smarcad1b	82	59.137	ENSCSAG00000004186	SMARCAD1	95	57.934	Chlorocebus_sabaeus
ENSDARG00000073721	smarcad1b	98	51.731	ENSCPBG00000013203	SMARCAD1	93	51.327	Chrysemys_picta_bellii
ENSDARG00000073721	smarcad1b	68	49.014	ENSCING00000001688	-	99	49.014	Ciona_intestinalis
ENSDARG00000073721	smarcad1b	82	59.264	ENSCANG00000003556	SMARCAD1	100	66.275	Colobus_angolensis_palliatus
ENSDARG00000073721	smarcad1b	82	58.704	ENSCGRG00001015056	Smarcad1	79	57.125	Cricetulus_griseus_chok1gshd
ENSDARG00000073721	smarcad1b	82	58.704	ENSCGRG00000014087	Smarcad1	79	57.125	Cricetulus_griseus_crigri
ENSDARG00000073721	smarcad1b	79	69.010	ENSCSEG00000017903	smarcad1a	69	72.043	Cynoglossus_semilaevis
ENSDARG00000073721	smarcad1b	78	69.457	ENSCSEG00000014419	-	74	71.275	Cynoglossus_semilaevis
ENSDARG00000073721	smarcad1b	82	59.518	ENSDNOG00000000806	-	78	58.303	Dasypus_novemcinctus
ENSDARG00000073721	smarcad1b	82	59.264	ENSDORG00000012331	Smarcad1	78	57.635	Dipodomys_ordii
ENSDARG00000073721	smarcad1b	65	43.651	FBgn0032157	Etl1	75	43.634	Drosophila_melanogaster
ENSDARG00000073721	smarcad1b	67	46.462	ENSEBUG00000003969	smarcad1a	94	47.368	Eptatretus_burgeri
ENSDARG00000073721	smarcad1b	82	59.645	ENSEASG00005012382	SMARCAD1	74	63.595	Equus_asinus_asinus
ENSDARG00000073721	smarcad1b	82	59.645	ENSECAG00000011562	SMARCAD1	78	58.426	Equus_caballus
ENSDARG00000073721	smarcad1b	96	61.653	ENSELUG00000019154	smarcad1b	92	61.489	Esox_lucius
ENSDARG00000073721	smarcad1b	82	59.391	ENSFCAG00000003958	SMARCAD1	100	66.611	Felis_catus
ENSDARG00000073721	smarcad1b	99	52.792	ENSFALG00000006089	SMARCAD1	82	57.733	Ficedula_albicollis
ENSDARG00000073721	smarcad1b	84	71.450	ENSFHEG00000012778	smarcad1a	70	72.811	Fundulus_heteroclitus
ENSDARG00000073721	smarcad1b	85	64.799	ENSGMOG00000018995	smarcad1a	92	64.555	Gadus_morhua
ENSDARG00000073721	smarcad1b	83	57.196	ENSGALG00000037339	SMARCAD1	95	57.233	Gallus_gallus
ENSDARG00000073721	smarcad1b	66	73.408	ENSGAFG00000013498	smarcad1a	60	73.408	Gambusia_affinis
ENSDARG00000073721	smarcad1b	85	65.054	ENSGACG00000007327	smarcad1a	92	65.181	Gasterosteus_aculeatus
ENSDARG00000073721	smarcad1b	82	59.137	ENSGGOG00000023001	SMARCAD1	78	57.934	Gorilla_gorilla
ENSDARG00000073721	smarcad1b	73	72.166	ENSHBUG00000011042	smarcad1a	62	74.962	Haplochromis_burtoni
ENSDARG00000073721	smarcad1b	82	59.212	ENSHGLG00000005070	SMARCAD1	82	55.814	Heterocephalus_glaber_female
ENSDARG00000073721	smarcad1b	82	59.212	ENSHGLG00100006812	SMARCAD1	82	55.814	Heterocephalus_glaber_male
ENSDARG00000073721	smarcad1b	72	70.671	ENSHCOG00000007848	smarcad1a	67	70.353	Hippocampus_comes
ENSDARG00000073721	smarcad1b	98	68.980	ENSIPUG00000022817	smarcad1b	99	68.158	Ictalurus_punctatus
ENSDARG00000073721	smarcad1b	88	72.419	ENSIPUG00000000242	smarcad1a	79	71.032	Ictalurus_punctatus
ENSDARG00000073721	smarcad1b	82	58.809	ENSSTOG00000001227	SMARCAD1	78	57.528	Ictidomys_tridecemlineatus
ENSDARG00000073721	smarcad1b	82	59.439	ENSJJAG00000022342	Smarcad1	78	58.220	Jaculus_jaculus
ENSDARG00000073721	smarcad1b	69	72.409	ENSKMAG00000021351	smarcad1a	59	74.679	Kryptolebias_marmoratus
ENSDARG00000073721	smarcad1b	81	74.290	ENSLBEG00000008088	smarcad1a	72	75.422	Labrus_bergylta
ENSDARG00000073721	smarcad1b	97	57.469	ENSLOCG00000012909	smarcad1a	80	63.827	Lepisosteus_oculatus
ENSDARG00000073721	smarcad1b	82	58.122	ENSLAFG00000000040	SMARCAD1	78	56.950	Loxodonta_africana
ENSDARG00000073721	smarcad1b	82	59.137	ENSMFAG00000042606	SMARCAD1	90	57.934	Macaca_fascicularis
ENSDARG00000073721	smarcad1b	82	59.137	ENSMMUG00000022242	SMARCAD1	90	57.934	Macaca_mulatta
ENSDARG00000073721	smarcad1b	82	59.137	ENSMNEG00000038117	SMARCAD1	100	66.275	Macaca_nemestrina
ENSDARG00000073721	smarcad1b	82	59.137	ENSMLEG00000038333	SMARCAD1	100	66.275	Mandrillus_leucophaeus
ENSDARG00000073721	smarcad1b	85	62.150	ENSMAMG00000000933	smarcad1a	72	75.115	Mastacembelus_armatus
ENSDARG00000073721	smarcad1b	85	63.647	ENSMZEG00005005203	smarcad1a	64	75.422	Maylandia_zebra
ENSDARG00000073721	smarcad1b	83	55.652	ENSMGAG00000005577	SMARCAD1	70	67.116	Meleagris_gallopavo
ENSDARG00000073721	smarcad1b	82	58.831	ENSMAUG00000008417	Smarcad1	78	57.463	Mesocricetus_auratus
ENSDARG00000073721	smarcad1b	82	59.494	ENSMICG00000009746	SMARCAD1	77	58.531	Microcebus_murinus
ENSDARG00000073721	smarcad1b	82	58.673	ENSMOCG00000017142	Smarcad1	78	57.602	Microtus_ochrogaster
ENSDARG00000073721	smarcad1b	75	70.474	ENSMMOG00000000275	smarcad1a	89	75.625	Mola_mola
ENSDARG00000073721	smarcad1b	100	52.882	ENSMODG00000019268	SMARCAD1	77	58.949	Monodelphis_domestica
ENSDARG00000073721	smarcad1b	85	56.747	MGP_CAROLIEiJ_G0028458	-	65	56.469	Mus_caroli
ENSDARG00000073721	smarcad1b	85	56.747	ENSMUSG00000029920	Smarcad1	80	56.469	Mus_musculus
ENSDARG00000073721	smarcad1b	85	56.627	MGP_PahariEiJ_G0022198	Smarcad1	80	56.348	Mus_pahari
ENSDARG00000073721	smarcad1b	85	56.627	MGP_SPRETEiJ_G0029462	Smarcad1	80	56.348	Mus_spretus
ENSDARG00000073721	smarcad1b	82	59.645	ENSMPUG00000002111	SMARCAD1	78	58.426	Mustela_putorius_furo
ENSDARG00000073721	smarcad1b	82	59.212	ENSMLUG00000000425	SMARCAD1	78	56.832	Myotis_lucifugus
ENSDARG00000073721	smarcad1b	82	58.913	ENSNGAG00000000810	Smarcad1	79	57.688	Nannospalax_galili
ENSDARG00000073721	smarcad1b	71	72.312	ENSNBRG00000012749	smarcad1a	76	75.237	Neolamprologus_brichardi
ENSDARG00000073721	smarcad1b	82	59.137	ENSNLEG00000014225	SMARCAD1	100	66.275	Nomascus_leucogenys
ENSDARG00000073721	smarcad1b	82	59.796	ENSODEG00000004334	SMARCAD1	78	58.231	Octodon_degus
ENSDARG00000073721	smarcad1b	67	75.351	ENSONIG00000015059	smarcad1a	68	74.504	Oreochromis_niloticus
ENSDARG00000073721	smarcad1b	83	59.402	ENSOANG00000013764	SMARCAD1	99	58.617	Ornithorhynchus_anatinus
ENSDARG00000073721	smarcad1b	82	58.883	ENSOCUG00000017283	SMARCAD1	78	57.688	Oryctolagus_cuniculus
ENSDARG00000073721	smarcad1b	69	73.252	ENSORLG00000004869	smarcad1a	62	73.886	Oryzias_latipes
ENSDARG00000073721	smarcad1b	91	73.252	ENSORLG00020020569	smarcad1a	83	73.886	Oryzias_latipes_hni
ENSDARG00000073721	smarcad1b	91	73.252	ENSORLG00015009045	smarcad1a	83	73.886	Oryzias_latipes_hsok
ENSDARG00000073721	smarcad1b	68	73.118	ENSOMEG00000023032	smarcad1a	62	73.118	Oryzias_melastigma
ENSDARG00000073721	smarcad1b	82	59.114	ENSOGAG00000011444	SMARCAD1	80	56.647	Otolemur_garnettii
ENSDARG00000073721	smarcad1b	82	59.241	ENSOARG00000017851	SMARCAD1	78	58.037	Ovis_aries
ENSDARG00000073721	smarcad1b	82	59.137	ENSPPAG00000035715	SMARCAD1	78	57.934	Pan_paniscus
ENSDARG00000073721	smarcad1b	82	59.391	ENSPPRG00000024756	SMARCAD1	100	66.611	Panthera_pardus
ENSDARG00000073721	smarcad1b	82	59.241	ENSPTIG00000017868	SMARCAD1	78	58.037	Panthera_tigris_altaica
ENSDARG00000073721	smarcad1b	82	59.137	ENSPTRG00000023126	SMARCAD1	100	66.275	Pan_troglodytes
ENSDARG00000073721	smarcad1b	82	59.343	ENSPSIG00000010255	SMARCAD1	81	56.176	Pelodiscus_sinensis
ENSDARG00000073721	smarcad1b	67	72.118	ENSPMGG00000010735	smarcad1a	93	71.363	Periophthalmus_magnuspinnatus
ENSDARG00000073721	smarcad1b	80	52.214	ENSPEMG00000001854	Smarcad1	75	51.567	Peromyscus_maniculatus_bairdii
ENSDARG00000073721	smarcad1b	86	49.302	ENSPMAG00000003516	smarcad1a	83	49.703	Petromyzon_marinus
ENSDARG00000073721	smarcad1b	83	59.453	ENSPCIG00000008137	SMARCAD1	97	58.591	Phascolarctos_cinereus
ENSDARG00000073721	smarcad1b	68	72.504	ENSPFOG00000019116	smarcad1a	60	72.504	Poecilia_formosa
ENSDARG00000073721	smarcad1b	68	72.350	ENSPLAG00000000108	smarcad1a	60	72.350	Poecilia_latipinna
ENSDARG00000073721	smarcad1b	68	72.504	ENSPMEG00000009155	smarcad1a	60	72.504	Poecilia_mexicana
ENSDARG00000073721	smarcad1b	71	70.760	ENSPREG00000018185	smarcad1a	66	72.811	Poecilia_reticulata
ENSDARG00000073721	smarcad1b	82	58.608	ENSPPYG00000014935	SMARCAD1	78	57.423	Pongo_abelii
ENSDARG00000073721	smarcad1b	76	51.565	ENSPCOG00000020478	SMARCAD1	73	55.099	Propithecus_coquereli
ENSDARG00000073721	smarcad1b	82	59.339	ENSPVAG00000001760	SMARCAD1	78	57.934	Pteropus_vampyrus
ENSDARG00000073721	smarcad1b	71	72.059	ENSPNYG00000010087	smarcad1a	76	74.921	Pundamilia_nyererei
ENSDARG00000073721	smarcad1b	85	62.143	ENSPNAG00000001663	smarcad1a	85	61.740	Pygocentrus_nattereri
ENSDARG00000073721	smarcad1b	100	68.654	ENSPNAG00000010099	smarcad1b	100	68.111	Pygocentrus_nattereri
ENSDARG00000073721	smarcad1b	84	57.745	ENSRNOG00000006391	Smarcad1	78	57.463	Rattus_norvegicus
ENSDARG00000073721	smarcad1b	82	59.137	ENSRBIG00000041989	SMARCAD1	78	57.934	Rhinopithecus_bieti
ENSDARG00000073721	smarcad1b	82	59.137	ENSRROG00000035309	SMARCAD1	78	57.934	Rhinopithecus_roxellana
ENSDARG00000073721	smarcad1b	82	59.137	ENSSBOG00000032114	SMARCAD1	100	66.443	Saimiri_boliviensis_boliviensis
ENSDARG00000073721	smarcad1b	98	53.333	ENSSHAG00000001279	SMARCAD1	93	51.939	Sarcophilus_harrisii
ENSDARG00000073721	smarcad1b	99	61.461	ENSSFOG00015016814	smarcad1b	64	76.888	Scleropages_formosus
ENSDARG00000073721	smarcad1b	77	71.736	ENSSMAG00000001326	smarcad1a	68	75.312	Scophthalmus_maximus
ENSDARG00000073721	smarcad1b	73	72.740	ENSSDUG00000022338	smarcad1a	76	76.406	Seriola_dumerili
ENSDARG00000073721	smarcad1b	80	71.593	ENSSLDG00000024986	smarcad1a	67	75.312	Seriola_lalandi_dorsalis
ENSDARG00000073721	smarcad1b	62	65.997	ENSSPUG00000004633	SMARCAD1	100	65.997	Sphenodon_punctatus
ENSDARG00000073721	smarcad1b	81	75.522	ENSSPAG00000001970	smarcad1a	61	76.344	Stegastes_partitus
ENSDARG00000073721	smarcad1b	82	59.367	ENSSSCG00000009193	SMARCAD1	95	58.160	Sus_scrofa
ENSDARG00000073721	smarcad1b	82	59.975	ENSTGUG00000003127	SMARCAD1	99	60.406	Taeniopygia_guttata
ENSDARG00000073721	smarcad1b	84	67.329	ENSTNIG00000017585	smarcad1a	93	65.939	Tetraodon_nigroviridis
ENSDARG00000073721	smarcad1b	71	68.452	ENSTBEG00000002789	SMARCAD1	62	68.452	Tupaia_belangeri
ENSDARG00000073721	smarcad1b	82	58.913	ENSTTRG00000000226	SMARCAD1	80	57.721	Tursiops_truncatus
ENSDARG00000073721	smarcad1b	82	59.518	ENSUAMG00000022262	SMARCAD1	80	59.628	Ursus_americanus
ENSDARG00000073721	smarcad1b	82	59.518	ENSUMAG00000004549	SMARCAD1	78	58.303	Ursus_maritimus
ENSDARG00000073721	smarcad1b	82	59.518	ENSVVUG00000007271	SMARCAD1	95	58.303	Vulpes_vulpes
ENSDARG00000073721	smarcad1b	84	54.233	ENSXETG00000019214	smarcad1	92	54.321	Xenopus_tropicalis
ENSDARG00000073721	smarcad1b	80	65.269	ENSXCOG00000005232	smarcad1a	78	73.089	Xiphophorus_couchianus
ENSDARG00000073721	smarcad1b	71	71.006	ENSXMAG00000015350	smarcad1a	60	72.657	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000729	DNA double-strand break processing	-	ISS	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0035861	site of double-strand break	-	ISS	Component
GO:0043044	ATP-dependent chromatin remodeling	-	ISS	Process