EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000073892 (Gene tree)
Gene ID: 553399
Gene Symbol: secisbp2
Alias: im:7147048|si:ch211-261c8.1
Full Name: SECIS binding protein 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 20594 bases
Position: chr5:66250856-66271449
Accession: ZDB-GENE-050208-263
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000119406	Ribosomal_L7Ae	PF01248.26	9.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000132789	-	1809	-	ENSDARP00000119406	545 (aa)	-	F1R3N8

Gene Model

Click here to download ENSDARG00000073892's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000073892's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000073892	secisbp2	66	47.382	ENSG00000138593	SECISBP2L	59	47.120	Homo_sapiens
ENSDARG00000073892	secisbp2	85	48.041	ENSG00000187742	SECISBP2	59	48.665	Homo_sapiens
ENSDARG00000073892	secisbp2	97	59.019	ENSAPOG00000005939	secisbp2	71	59.370	Acanthochromis_polyacanthus
ENSDARG00000073892	secisbp2	85	48.473	ENSAMEG00000003349	SECISBP2	54	48.485	Ailuropoda_melanoleuca
ENSDARG00000073892	secisbp2	93	53.385	ENSACIG00000024185	secisbp2	96	53.385	Amphilophus_citrinellus
ENSDARG00000073892	secisbp2	98	59.441	ENSAOCG00000019052	secisbp2	72	59.441	Amphiprion_ocellaris
ENSDARG00000073892	secisbp2	98	59.266	ENSAPEG00000012971	secisbp2	72	59.266	Amphiprion_percula
ENSDARG00000073892	secisbp2	98	55.420	ENSATEG00000001095	secisbp2	72	56.469	Anabas_testudineus
ENSDARG00000073892	secisbp2	94	48.155	ENSAPLG00000013053	SECISBP2	55	51.983	Anas_platyrhynchos
ENSDARG00000073892	secisbp2	78	53.079	ENSACAG00000016594	SECISBP2	55	53.066	Anolis_carolinensis
ENSDARG00000073892	secisbp2	83	49.474	ENSANAG00000028208	SECISBP2	55	48.996	Aotus_nancymaae
ENSDARG00000073892	secisbp2	97	57.699	ENSACLG00000019976	secisbp2	72	57.699	Astatotilapia_calliptera
ENSDARG00000073892	secisbp2	99	62.437	ENSAMXG00000015953	secisbp2	75	63.435	Astyanax_mexicanus
ENSDARG00000073892	secisbp2	85	48.460	ENSBTAG00000001939	SECISBP2	61	48.065	Bos_taurus
ENSDARG00000073892	secisbp2	85	48.980	ENSCJAG00000007806	SECISBP2	54	48.996	Callithrix_jacchus
ENSDARG00000073892	secisbp2	85	49.493	ENSCAFG00000002188	SECISBP2	55	49.095	Canis_familiaris
ENSDARG00000073892	secisbp2	85	49.493	ENSCAFG00020007224	SECISBP2	55	49.095	Canis_lupus_dingo
ENSDARG00000073892	secisbp2	85	48.491	ENSCHIG00000010657	SECISBP2	54	48.104	Capra_hircus
ENSDARG00000073892	secisbp2	85	47.119	ENSTSYG00000014119	SECISBP2	58	49.068	Carlito_syrichta
ENSDARG00000073892	secisbp2	65	52.815	ENSCAPG00000008522	SECISBP2	54	52.815	Cavia_aperea
ENSDARG00000073892	secisbp2	84	49.790	ENSCPOG00000014270	SECISBP2	53	49.790	Cavia_porcellus
ENSDARG00000073892	secisbp2	85	50.509	ENSCCAG00000013350	SECISBP2	54	50.909	Cebus_capucinus
ENSDARG00000073892	secisbp2	85	48.776	ENSCATG00000008304	SECISBP2	52	52.681	Cercocebus_atys
ENSDARG00000073892	secisbp2	82	50.955	ENSCLAG00000001166	SECISBP2	51	50.743	Chinchilla_lanigera
ENSDARG00000073892	secisbp2	85	48.880	ENSCSAG00000007310	SECISBP2	54	49.597	Chlorocebus_sabaeus
ENSDARG00000073892	secisbp2	80	49.798	ENSCPBG00000005608	SECISBP2	97	50.403	Chrysemys_picta_bellii
ENSDARG00000073892	secisbp2	85	48.884	ENSCANG00000034551	SECISBP2	59	49.595	Colobus_angolensis_palliatus
ENSDARG00000073892	secisbp2	85	49.076	ENSCGRG00001013930	Secisbp2	54	48.269	Cricetulus_griseus_chok1gshd
ENSDARG00000073892	secisbp2	85	49.076	ENSCGRG00000002600	Secisbp2	54	48.269	Cricetulus_griseus_crigri
ENSDARG00000073892	secisbp2	58	58.491	ENSCSEG00000010220	-	85	58.491	Cynoglossus_semilaevis
ENSDARG00000073892	secisbp2	97	56.481	ENSCVAG00000015876	secisbp2	69	57.593	Cyprinodon_variegatus
ENSDARG00000073892	secisbp2	85	50.101	ENSDNOG00000009432	SECISBP2	53	49.698	Dasypus_novemcinctus
ENSDARG00000073892	secisbp2	85	49.287	ENSDORG00000023182	Secisbp2	54	49.287	Dipodomys_ordii
ENSDARG00000073892	secisbp2	64	44.193	ENSEBUG00000008208	secisbp2	93	43.909	Eptatretus_burgeri
ENSDARG00000073892	secisbp2	85	50.309	ENSEASG00005013960	SECISBP2	55	49.898	Equus_asinus_asinus
ENSDARG00000073892	secisbp2	85	50.309	ENSECAG00000015868	SECISBP2	55	49.489	Equus_caballus
ENSDARG00000073892	secisbp2	83	50.212	ENSEEUG00000004400	SECISBP2	53	50.212	Erinaceus_europaeus
ENSDARG00000073892	secisbp2	75	60.577	ENSELUG00000014795	-	92	60.577	Esox_lucius
ENSDARG00000073892	secisbp2	85	47.727	ENSFCAG00000004214	SECISBP2	59	46.721	Felis_catus
ENSDARG00000073892	secisbp2	95	47.279	ENSFALG00000012441	SECISBP2	65	47.959	Ficedula_albicollis
ENSDARG00000073892	secisbp2	81	50.972	ENSFDAG00000021183	SECISBP2	50	50.318	Fukomys_damarensis
ENSDARG00000073892	secisbp2	96	54.417	ENSFHEG00000004095	secisbp2	73	54.417	Fundulus_heteroclitus
ENSDARG00000073892	secisbp2	58	75.229	ENSGMOG00000017234	secisbp2	68	71.784	Gadus_morhua
ENSDARG00000073892	secisbp2	93	46.620	ENSGALG00000010694	SECISBP2	61	47.378	Gallus_gallus
ENSDARG00000073892	secisbp2	93	56.772	ENSGAFG00000016947	secisbp2	69	56.772	Gambusia_affinis
ENSDARG00000073892	secisbp2	98	56.429	ENSGACG00000013757	secisbp2	89	55.536	Gasterosteus_aculeatus
ENSDARG00000073892	secisbp2	85	48.354	ENSGGOG00000000453	SECISBP2	58	49.076	Gorilla_gorilla
ENSDARG00000073892	secisbp2	72	64.619	ENSHBUG00000007014	secisbp2	98	64.619	Haplochromis_burtoni
ENSDARG00000073892	secisbp2	85	50.103	ENSHGLG00000014380	SECISBP2	52	49.190	Heterocephalus_glaber_female
ENSDARG00000073892	secisbp2	85	50.103	ENSHGLG00100006953	SECISBP2	52	49.190	Heterocephalus_glaber_male
ENSDARG00000073892	secisbp2	88	55.823	ENSHCOG00000008010	secisbp2	63	57.143	Hippocampus_comes
ENSDARG00000073892	secisbp2	98	63.363	ENSIPUG00000015393	secisbp2	72	63.363	Ictalurus_punctatus
ENSDARG00000073892	secisbp2	85	49.693	ENSSTOG00000000921	SECISBP2	54	49.290	Ictidomys_tridecemlineatus
ENSDARG00000073892	secisbp2	92	46.947	ENSJJAG00000020492	Secisbp2	54	47.951	Jaculus_jaculus
ENSDARG00000073892	secisbp2	95	57.169	ENSKMAG00000007129	secisbp2	73	56.781	Kryptolebias_marmoratus
ENSDARG00000073892	secisbp2	97	56.063	ENSLBEG00000026023	secisbp2	71	56.714	Labrus_bergylta
ENSDARG00000073892	secisbp2	84	51.008	ENSLACG00000005735	SECISBP2	91	50.704	Latimeria_chalumnae
ENSDARG00000073892	secisbp2	88	40.429	ENSLACG00000012542	SECISBP2L	51	40.253	Latimeria_chalumnae
ENSDARG00000073892	secisbp2	98	59.965	ENSLOCG00000011742	secisbp2	97	60.284	Lepisosteus_oculatus
ENSDARG00000073892	secisbp2	81	49.469	ENSLAFG00000012998	SECISBP2	51	49.580	Loxodonta_africana
ENSDARG00000073892	secisbp2	85	48.776	ENSMFAG00000003045	SECISBP2	59	49.495	Macaca_fascicularis
ENSDARG00000073892	secisbp2	85	48.975	ENSMMUG00000012532	SECISBP2	58	49.696	Macaca_mulatta
ENSDARG00000073892	secisbp2	85	48.571	ENSMNEG00000031737	SECISBP2	58	49.293	Macaca_nemestrina
ENSDARG00000073892	secisbp2	85	48.571	ENSMLEG00000028868	SECISBP2	58	49.293	Mandrillus_leucophaeus
ENSDARG00000073892	secisbp2	97	53.925	ENSMAMG00000006644	secisbp2	72	55.385	Mastacembelus_armatus
ENSDARG00000073892	secisbp2	97	57.699	ENSMZEG00005013614	secisbp2	72	57.699	Maylandia_zebra
ENSDARG00000073892	secisbp2	85	48.269	ENSMAUG00000008659	Secisbp2	55	47.942	Mesocricetus_auratus
ENSDARG00000073892	secisbp2	85	48.682	ENSMICG00000001176	SECISBP2	59	48.290	Microcebus_murinus
ENSDARG00000073892	secisbp2	85	49.180	ENSMOCG00000000616	Secisbp2	54	48.671	Microtus_ochrogaster
ENSDARG00000073892	secisbp2	77	58.581	ENSMMOG00000017977	secisbp2	98	58.986	Mola_mola
ENSDARG00000073892	secisbp2	93	46.235	ENSMODG00000013365	SECISBP2	55	50.813	Monodelphis_domestica
ENSDARG00000073892	secisbp2	99	55.479	ENSMALG00000004907	secisbp2	75	55.479	Monopterus_albus
ENSDARG00000073892	secisbp2	61	50.992	MGP_CAROLIEiJ_G0024231	Secisbp2l	79	50.000	Mus_caroli
ENSDARG00000073892	secisbp2	85	50.103	MGP_CAROLIEiJ_G0018518	Secisbp2	54	49.795	Mus_caroli
ENSDARG00000073892	secisbp2	61	50.708	ENSMUSG00000035093	Secisbp2l	79	50.000	Mus_musculus
ENSDARG00000073892	secisbp2	85	49.383	ENSMUSG00000035139	Secisbp2	54	49.693	Mus_musculus
ENSDARG00000073892	secisbp2	61	50.992	MGP_PahariEiJ_G0025677	Secisbp2l	79	50.286	Mus_pahari
ENSDARG00000073892	secisbp2	85	49.794	MGP_PahariEiJ_G0019584	Secisbp2	54	49.383	Mus_pahari
ENSDARG00000073892	secisbp2	85	49.287	MGP_SPRETEiJ_G0019399	Secisbp2	54	49.393	Mus_spretus
ENSDARG00000073892	secisbp2	61	50.708	MGP_SPRETEiJ_G0025151	Secisbp2l	79	50.000	Mus_spretus
ENSDARG00000073892	secisbp2	83	49.460	ENSMPUG00000008495	-	81	49.460	Mustela_putorius_furo
ENSDARG00000073892	secisbp2	84	50.628	ENSMLUG00000012348	SECISBP2	52	50.628	Myotis_lucifugus
ENSDARG00000073892	secisbp2	85	48.671	ENSNGAG00000002364	Secisbp2	54	47.773	Nannospalax_galili
ENSDARG00000073892	secisbp2	97	57.244	ENSNBRG00000022804	secisbp2	72	57.092	Neolamprologus_brichardi
ENSDARG00000073892	secisbp2	85	48.780	ENSNLEG00000008739	SECISBP2	58	49.390	Nomascus_leucogenys
ENSDARG00000073892	secisbp2	83	50.964	ENSODEG00000000675	SECISBP2	54	50.955	Octodon_degus
ENSDARG00000073892	secisbp2	84	61.588	ENSONIG00000016931	secisbp2	99	65.128	Oreochromis_niloticus
ENSDARG00000073892	secisbp2	83	49.894	ENSOCUG00000012932	SECISBP2	53	49.686	Oryctolagus_cuniculus
ENSDARG00000073892	secisbp2	98	55.654	ENSORLG00000000343	secisbp2	85	55.773	Oryzias_latipes
ENSDARG00000073892	secisbp2	98	55.908	ENSORLG00020012878	secisbp2	82	55.694	Oryzias_latipes_hni
ENSDARG00000073892	secisbp2	98	55.556	ENSORLG00015004559	secisbp2	75	55.674	Oryzias_latipes_hsok
ENSDARG00000073892	secisbp2	97	57.424	ENSOMEG00000008595	secisbp2	75	57.713	Oryzias_melastigma
ENSDARG00000073892	secisbp2	85	50.102	ENSOGAG00000000317	SECISBP2	53	50.102	Otolemur_garnettii
ENSDARG00000073892	secisbp2	85	49.795	ENSOARG00000007741	SECISBP2	54	49.390	Ovis_aries
ENSDARG00000073892	secisbp2	85	48.560	ENSPPAG00000012385	SECISBP2	58	49.281	Pan_paniscus
ENSDARG00000073892	secisbp2	85	48.033	ENSPPRG00000023911	SECISBP2	54	48.049	Panthera_pardus
ENSDARG00000073892	secisbp2	85	47.870	ENSPTRG00000021094	SECISBP2	59	48.988	Pan_troglodytes
ENSDARG00000073892	secisbp2	85	48.571	ENSPANG00000024873	SECISBP2	52	52.681	Papio_anubis
ENSDARG00000073892	secisbp2	99	54.720	ENSPKIG00000006499	SECISBP2	73	54.720	Paramormyrops_kingsleyae
ENSDARG00000073892	secisbp2	66	49.086	ENSPKIG00000020244	SECISBP2L	50	40.000	Paramormyrops_kingsleyae
ENSDARG00000073892	secisbp2	84	50.778	ENSPSIG00000016257	SECISBP2	62	50.778	Pelodiscus_sinensis
ENSDARG00000073892	secisbp2	85	49.187	ENSPEMG00000020212	Secisbp2	54	49.385	Peromyscus_maniculatus_bairdii
ENSDARG00000073892	secisbp2	52	42.857	ENSPMAG00000002525	-	99	35.198	Petromyzon_marinus
ENSDARG00000073892	secisbp2	93	45.374	ENSPCIG00000010304	SECISBP2	54	49.895	Phascolarctos_cinereus
ENSDARG00000073892	secisbp2	97	55.185	ENSPFOG00000008146	secisbp2	87	53.180	Poecilia_formosa
ENSDARG00000073892	secisbp2	75	60.959	ENSPLAG00000004505	secisbp2	97	60.959	Poecilia_latipinna
ENSDARG00000073892	secisbp2	99	53.659	ENSPMEG00000013702	secisbp2	73	53.659	Poecilia_mexicana
ENSDARG00000073892	secisbp2	97	53.832	ENSPREG00000008117	secisbp2	74	53.391	Poecilia_reticulata
ENSDARG00000073892	secisbp2	85	48.665	ENSPPYG00000019359	SECISBP2	54	49.385	Pongo_abelii
ENSDARG00000073892	secisbp2	78	46.759	ENSPCAG00000000559	-	50	46.296	Procavia_capensis
ENSDARG00000073892	secisbp2	85	49.388	ENSPCOG00000013354	SECISBP2	54	48.594	Propithecus_coquereli
ENSDARG00000073892	secisbp2	97	57.699	ENSPNYG00000016799	secisbp2	72	57.699	Pundamilia_nyererei
ENSDARG00000073892	secisbp2	98	62.937	ENSPNAG00000029922	secisbp2	78	64.161	Pygocentrus_nattereri
ENSDARG00000073892	secisbp2	85	48.760	ENSRNOG00000013773	Secisbp2	54	48.554	Rattus_norvegicus
ENSDARG00000073892	secisbp2	85	48.571	ENSRBIG00000044115	SECISBP2	54	49.293	Rhinopithecus_bieti
ENSDARG00000073892	secisbp2	85	48.571	ENSRROG00000030742	SECISBP2	54	52.681	Rhinopithecus_roxellana
ENSDARG00000073892	secisbp2	85	49.184	ENSSBOG00000015392	SECISBP2	62	49.197	Saimiri_boliviensis_boliviensis
ENSDARG00000073892	secisbp2	81	51.168	ENSSHAG00000005947	SECISBP2	52	52.966	Sarcophilus_harrisii
ENSDARG00000073892	secisbp2	99	55.143	ENSSFOG00015010409	secisbp2	71	55.241	Scleropages_formosus
ENSDARG00000073892	secisbp2	98	57.993	ENSSMAG00000008472	secisbp2	88	56.973	Scophthalmus_maximus
ENSDARG00000073892	secisbp2	98	57.366	ENSSDUG00000002089	secisbp2	72	57.366	Seriola_dumerili
ENSDARG00000073892	secisbp2	98	57.539	ENSSLDG00000003510	secisbp2	72	57.539	Seriola_lalandi_dorsalis
ENSDARG00000073892	secisbp2	86	49.245	ENSSPUG00000009635	SECISBP2	58	55.172	Sphenodon_punctatus
ENSDARG00000073892	secisbp2	95	59.752	ENSSPAG00000013606	secisbp2	70	59.752	Stegastes_partitus
ENSDARG00000073892	secisbp2	85	49.378	ENSSSCG00000028033	SECISBP2	53	48.971	Sus_scrofa
ENSDARG00000073892	secisbp2	82	51.277	ENSTGUG00000000440	SECISBP2	84	51.277	Taeniopygia_guttata
ENSDARG00000073892	secisbp2	98	55.971	ENSTRUG00000016835	secisbp2	79	55.971	Takifugu_rubripes
ENSDARG00000073892	secisbp2	87	58.776	ENSTNIG00000015576	secisbp2	99	59.388	Tetraodon_nigroviridis
ENSDARG00000073892	secisbp2	85	49.691	ENSTTRG00000003339	SECISBP2	54	49.284	Tursiops_truncatus
ENSDARG00000073892	secisbp2	83	49.582	ENSUAMG00000016243	SECISBP2	53	52.518	Ursus_americanus
ENSDARG00000073892	secisbp2	83	48.842	ENSUMAG00000016261	SECISBP2	52	52.195	Ursus_maritimus
ENSDARG00000073892	secisbp2	85	49.493	ENSVVUG00000022278	SECISBP2	58	49.095	Vulpes_vulpes
ENSDARG00000073892	secisbp2	85	50.101	ENSXETG00000029955	SECISBP2	86	50.101	Xenopus_tropicalis
ENSDARG00000073892	secisbp2	75	57.339	ENSXCOG00000009547	secisbp2	76	59.204	Xiphophorus_couchianus
ENSDARG00000073892	secisbp2	99	54.799	ENSXMAG00000003090	secisbp2	73	54.498	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001514	selenocysteine incorporation	21873635.	IBA	Process
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0035368	selenocysteine insertion sequence binding	21873635.	IBA	Function
GO:0035368	selenocysteine insertion sequence binding	-	IEA	Function
GO:0043021	ribonucleoprotein complex binding	21873635.	IBA	Function
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component