EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000073944 (Gene tree)
Gene ID: 563768
Gene Symbol: si:ch73-386h18.1
Alias: im:7145045|im:7152896|wu:fb53g09
Full Name: si:ch73-386h18.1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 44652 bases
Position: chr18:6039141-6083792
Accession: ZDB-GENE-050309-237
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000103045	zf-met	PF12874.7	0.00059	1	1
ENSDARP00000113495	zf-met	PF12874.7	0.00059	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000138972	-	13161	XM_687130	ENSDARP00000113495	3356 (aa)	XP_692222	F1Q7K3
ENSDART00000113668	-	13619	-	ENSDARP00000103045	3356 (aa)	-	F1Q7K3

Gene Model

Click here to download ENSDARG00000073944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000073944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000073944	si:ch73-386h18.1	74	50.990	ENSDARG00000103057	zfhx3	92	49.253
ENSDARG00000073944	si:ch73-386h18.1	82	46.754	ENSDARG00000075542	zfhx4	53	65.152

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000073944	si:ch73-386h18.1	50	60.656	ENSCHIG00000015491	ZFHX2	80	50.867	Capra_hircus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0043565	sequence-specific DNA binding	-	IEA	Function
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function