EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000074163 (Gene tree)
Gene ID: 572256
Gene Symbol: zgc:162879
Alias: -
Full Name: zgc:162879
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 16716 bases
Position: chr18:25754838-25771553
Accession: ZDB-GENE-070424-92
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000093820	MMR_HSR1	PF01926.23	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000131358	-	748	-	-	- (aa)	-	-
ENSDART00000103046	-	2570	-	ENSDARP00000093820	663 (aa)	-	A5WW21
ENSDART00000144043	-	594	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000074163's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000074163's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000074163	zgc:162879	84	34.538	ENSDARG00000068231	CRACR2A	79	34.538
ENSDARG00000074163	zgc:162879	99	38.582	ENSDARG00000076250	rasef	98	38.582

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000074163	zgc:162879	99	64.048	ENSAPOG00000008539	zgc:162879	99	64.048	Acanthochromis_polyacanthus
ENSDARG00000074163	zgc:162879	100	63.609	ENSACIG00000023717	zgc:162879	100	63.609	Amphilophus_citrinellus
ENSDARG00000074163	zgc:162879	85	63.428	ENSAOCG00000006210	zgc:162879	88	63.428	Amphiprion_ocellaris
ENSDARG00000074163	zgc:162879	99	64.297	ENSAPEG00000017489	zgc:162879	99	64.297	Amphiprion_percula
ENSDARG00000074163	zgc:162879	100	63.378	ENSATEG00000006102	zgc:162879	100	63.378	Anabas_testudineus
ENSDARG00000074163	zgc:162879	100	62.199	ENSACLG00000021066	zgc:162879	100	62.199	Astatotilapia_calliptera
ENSDARG00000074163	zgc:162879	100	73.363	ENSAMXG00000007430	zgc:162879	100	73.363	Astyanax_mexicanus
ENSDARG00000074163	zgc:162879	84	55.216	ENSCSEG00000013699	zgc:162879	90	55.216	Cynoglossus_semilaevis
ENSDARG00000074163	zgc:162879	99	58.069	ENSCVAG00000014510	zgc:162879	99	58.069	Cyprinodon_variegatus
ENSDARG00000074163	zgc:162879	90	61.401	ENSELUG00000019483	zgc:162879	97	61.401	Esox_lucius
ENSDARG00000074163	zgc:162879	76	58.416	ENSFHEG00000022549	zgc:162879	100	58.416	Fundulus_heteroclitus
ENSDARG00000074163	zgc:162879	100	57.357	ENSGAFG00000001313	zgc:162879	100	57.357	Gambusia_affinis
ENSDARG00000074163	zgc:162879	100	57.493	ENSGACG00000010798	zgc:162879	99	57.493	Gasterosteus_aculeatus
ENSDARG00000074163	zgc:162879	100	61.919	ENSHBUG00000016335	zgc:162879	100	61.919	Haplochromis_burtoni
ENSDARG00000074163	zgc:162879	99	44.444	ENSHCOG00000012026	zgc:162879	99	49.755	Hippocampus_comes
ENSDARG00000074163	zgc:162879	100	56.175	ENSKMAG00000016246	zgc:162879	100	56.175	Kryptolebias_marmoratus
ENSDARG00000074163	zgc:162879	99	59.699	ENSLBEG00000006690	zgc:162879	100	59.699	Labrus_bergylta
ENSDARG00000074163	zgc:162879	99	38.502	ENSLACG00000014082	-	99	38.371	Latimeria_chalumnae
ENSDARG00000074163	zgc:162879	99	59.287	ENSLOCG00000014347	zgc:162879	98	59.287	Lepisosteus_oculatus
ENSDARG00000074163	zgc:162879	100	61.145	ENSMAMG00000008875	zgc:162879	100	61.145	Mastacembelus_armatus
ENSDARG00000074163	zgc:162879	100	61.862	ENSMZEG00005022256	zgc:162879	100	61.862	Maylandia_zebra
ENSDARG00000074163	zgc:162879	100	56.541	ENSNBRG00000020110	zgc:162879	100	56.541	Neolamprologus_brichardi
ENSDARG00000074163	zgc:162879	99	59.914	ENSONIG00000015165	zgc:162879	100	59.914	Oreochromis_niloticus
ENSDARG00000074163	zgc:162879	99	57.553	ENSORLG00015017960	zgc:162879	99	57.553	Oryzias_latipes_hsok
ENSDARG00000074163	zgc:162879	100	59.549	ENSPKIG00000020661	zgc:162879	100	59.549	Paramormyrops_kingsleyae
ENSDARG00000074163	zgc:162879	100	57.982	ENSPFOG00000006354	zgc:162879	99	57.982	Poecilia_formosa
ENSDARG00000074163	zgc:162879	100	58.258	ENSPLAG00000020643	zgc:162879	99	58.258	Poecilia_latipinna
ENSDARG00000074163	zgc:162879	100	57.681	ENSPMEG00000014713	zgc:162879	100	57.681	Poecilia_mexicana
ENSDARG00000074163	zgc:162879	100	57.681	ENSPNYG00000010530	zgc:162879	100	57.681	Pundamilia_nyererei
ENSDARG00000074163	zgc:162879	100	73.997	ENSPNAG00000012022	zgc:162879	100	73.997	Pygocentrus_nattereri
ENSDARG00000074163	zgc:162879	88	49.834	ENSSFOG00015023774	zgc:162879	94	49.834	Scleropages_formosus
ENSDARG00000074163	zgc:162879	100	60.902	ENSSMAG00000001513	zgc:162879	99	60.902	Scophthalmus_maximus
ENSDARG00000074163	zgc:162879	99	63.855	ENSSDUG00000011478	zgc:162879	99	63.855	Seriola_dumerili
ENSDARG00000074163	zgc:162879	99	63.554	ENSSLDG00000000877	zgc:162879	99	63.554	Seriola_lalandi_dorsalis
ENSDARG00000074163	zgc:162879	100	58.283	ENSSPAG00000010598	zgc:162879	100	58.434	Stegastes_partitus
ENSDARG00000074163	zgc:162879	99	55.350	ENSTNIG00000019239	zgc:162879	98	55.350	Tetraodon_nigroviridis
ENSDARG00000074163	zgc:162879	99	42.975	ENSXETG00000015491	rasef	98	42.975	Xenopus_tropicalis
ENSDARG00000074163	zgc:162879	76	57.367	ENSXCOG00000020244	zgc:162879	99	57.367	Xiphophorus_couchianus
ENSDARG00000074163	zgc:162879	100	58.859	ENSXMAG00000002846	zgc:162879	100	58.859	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component