EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000074310 (Gene tree)
Gene ID
559412
Gene Symbol
rbfox3b
Alias
rbfox3l|si:ch73-322f21.1
Full Name
RNA binding fox-1 homolog 3b
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
218992 bases
Position
chr3:8323586-8542577
Accession
ZDB-GENE-091204-46
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000125707Fox-1_CPF12414.82.1e-4311
ENSDARP00000126058Fox-1_CPF12414.88.9e-4311
ENSDARP00000155985Fox-1_CPF12414.81.7e-2611
ENSDARP00000125909Fox-1_CPF12414.82.3e-2611
ENSDARP00000149975RRM_1PF00076.226.4e-1911
ENSDARP00000125909RRM_1PF00076.221.3e-1811
ENSDARP00000125707RRM_1PF00076.229.2e-0511
ENSDARP00000155985RRM_1PF00076.220.0001511
ENSDARP00000126058RRM_1PF00076.220.0001711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000132949-1254XM_017354719ENSDARP00000126058303 (aa)XP_017210208I3IT07
ENSDART00000113140-912XM_021472766ENSDARP00000125909303 (aa)XP_021328441I3ISM5
ENSDART00000183527-1311-ENSDARP00000149975202 (aa)-A0A2R8Q9N3
ENSDART00000190238-819-ENSDARP00000155985272 (aa)-A0A2R8QN63
ENSDART00000146856-861-ENSDARP00000125707200 (aa)-I3IS43
ENSDART00000140884-425--- (aa)--
Gene Model
Click here to download ENSDARG00000074310's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000074310's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000074310rbfox3b7152.970ENSDARG00000052182rbfox210054.545
ENSDARG00000074310rbfox3b9675.446ENSDARG00000010083rbfox3a9674.603
ENSDARG00000074310rbfox3b9759.402ENSDARG00000021184rbfox1l8252.960
ENSDARG00000074310rbfox3b9572.000ENSDARG00000014746rbfox110071.014
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000074310rbfox3b9673.214ENSG00000167281RBFOX39985.385Homo_sapiens
ENSDARG00000074310rbfox3b9171.127ENSAPOG00000015658-8073.585Acanthochromis_polyacanthus
ENSDARG00000074310rbfox3b9779.464ENSAPOG00000021630rbfox3b8578.594Acanthochromis_polyacanthus
ENSDARG00000074310rbfox3b9768.293ENSAMEG00000014170RBFOX39859.115Ailuropoda_melanoleuca
ENSDARG00000074310rbfox3b9682.000ENSACIG00000010817rbfox3b9982.667Amphilophus_citrinellus
ENSDARG00000074310rbfox3b9769.903ENSACIG00000003768-8765.705Amphilophus_citrinellus
ENSDARG00000074310rbfox3b9679.730ENSAOCG00000012358rbfox3b8578.594Amphiprion_ocellaris
ENSDARG00000074310rbfox3b9376.289ENSAOCG00000010786-8475.817Amphiprion_ocellaris
ENSDARG00000074310rbfox3b9774.272ENSAPEG00000019081rbfox3b8476.333Amphiprion_percula
ENSDARG00000074310rbfox3b9768.473ENSAPEG00000015891-8371.250Amphiprion_percula
ENSDARG00000074310rbfox3b9773.128ENSATEG00000023101-9867.593Anabas_testudineus
ENSDARG00000074310rbfox3b9671.512ENSATEG00000019945rbfox3b9972.093Anabas_testudineus
ENSDARG00000074310rbfox3b9475.000ENSACAG00000016093RBFOX38772.293Anolis_carolinensis
ENSDARG00000074310rbfox3b9671.749ENSANAG00000023457RBFOX310071.885Aotus_nancymaae
ENSDARG00000074310rbfox3b9779.556ENSACLG00000020011rbfox3b10078.344Astatotilapia_calliptera
ENSDARG00000074310rbfox3b9786.154ENSACLG00000025552-9866.890Astatotilapia_calliptera
ENSDARG00000074310rbfox3b9677.928ENSAMXG00000042841rbfox3b8976.358Astyanax_mexicanus
ENSDARG00000074310rbfox3b9787.692ENSAMXG00000037246rbfox3a9573.968Astyanax_mexicanus
ENSDARG00000074310rbfox3b9666.946ENSBTAG00000006280RBFOX310064.742Bos_taurus
ENSDARG00000074310rbfox3b9174.126ENSCJAG00000009563RBFOX39375.415Callithrix_jacchus
ENSDARG00000074310rbfox3b9772.124ENSCAFG00000005547RBFOX39966.547Canis_familiaris
ENSDARG00000074310rbfox3b9576.695ENSCAFG00020008126RBFOX38079.167Canis_lupus_dingo
ENSDARG00000074310rbfox3b9766.942ENSCHIG00000009124RBFOX39664.438Capra_hircus
ENSDARG00000074310rbfox3b8282.759ENSTSYG00000029617RBFOX310064.545Carlito_syrichta
ENSDARG00000074310rbfox3b7370.130ENSCAPG00000010217RBFOX310068.639Cavia_aperea
ENSDARG00000074310rbfox3b9669.421ENSCPOG00000021703RBFOX310063.444Cavia_porcellus
ENSDARG00000074310rbfox3b9671.749ENSCCAG00000028450RBFOX310071.885Cebus_capucinus
ENSDARG00000074310rbfox3b9673.094ENSCATG00000018349RBFOX310072.843Cercocebus_atys
ENSDARG00000074310rbfox3b9670.000ENSCLAG00000006449RBFOX38381.250Chinchilla_lanigera
ENSDARG00000074310rbfox3b9673.094ENSCSAG00000002355RBFOX310072.843Chlorocebus_sabaeus
ENSDARG00000074310rbfox3b9775.893ENSCPBG00000010904RBFOX310071.935Chrysemys_picta_bellii
ENSDARG00000074310rbfox3b9673.094ENSCANG00000043120RBFOX310072.843Colobus_angolensis_palliatus
ENSDARG00000074310rbfox3b8582.759ENSCGRG00001019476Rbfox310064.350Cricetulus_griseus_chok1gshd
ENSDARG00000074310rbfox3b8582.759ENSCGRG00000003268Rbfox310064.350Cricetulus_griseus_crigri
ENSDARG00000074310rbfox3b9866.228ENSCSEG00000020606RBFOX38368.531Cynoglossus_semilaevis
ENSDARG00000074310rbfox3b9574.150ENSCSEG00000015567RBFOX38973.786Cynoglossus_semilaevis
ENSDARG00000074310rbfox3b9679.730ENSCVAG00000006882rbfox3b8578.594Cyprinodon_variegatus
ENSDARG00000074310rbfox3b9557.993ENSDNOG00000039391RBFOX36278.142Dasypus_novemcinctus
ENSDARG00000074310rbfox3b8265.238ENSDORG00000005352Rbfox38178.261Dipodomys_ordii
ENSDARG00000074310rbfox3b9548.095ENSEBUG00000013559RBFOX38152.174Eptatretus_burgeri
ENSDARG00000074310rbfox3b9764.078ENSEBUG00000002129RBFOX39959.322Eptatretus_burgeri
ENSDARG00000074310rbfox3b9672.444ENSEASG00005005059RBFOX310071.975Equus_asinus_asinus
ENSDARG00000074310rbfox3b9772.368ENSECAG00000023811RBFOX310071.975Equus_caballus
ENSDARG00000074310rbfox3b8571.508ENSEEUG00000013974RBFOX37682.667Erinaceus_europaeus
ENSDARG00000074310rbfox3b9793.264ENSELUG00000017963rbfox3b10082.095Esox_lucius
ENSDARG00000074310rbfox3b8767.429ENSELUG00000009807-5168.208Esox_lucius
ENSDARG00000074310rbfox3b9772.889ENSFCAG00000002555RBFOX310071.795Felis_catus
ENSDARG00000074310rbfox3b9769.458ENSFALG00000012288RBFOX39950.374Ficedula_albicollis
ENSDARG00000074310rbfox3b9663.223ENSFDAG00000007489RBFOX38278.000Fukomys_damarensis
ENSDARG00000074310rbfox3b9692.670ENSFHEG00000008550rbfox3b10081.915Fundulus_heteroclitus
ENSDARG00000074310rbfox3b9586.957ENSGMOG00000019304-7786.957Gadus_morhua
ENSDARG00000074310rbfox3b9684.974ENSGALG00000032889RBFOX38773.077Gallus_gallus
ENSDARG00000074310rbfox3b9680.333ENSGAFG00000005025rbfox3b8878.361Gambusia_affinis
ENSDARG00000074310rbfox3b9758.394ENSGACG00000002138-8081.250Gasterosteus_aculeatus
ENSDARG00000074310rbfox3b9689.005ENSGAGG00000020025RBFOX310072.258Gopherus_agassizii
ENSDARG00000074310rbfox3b9673.094ENSGGOG00000012546RBFOX310074.038Gorilla_gorilla
ENSDARG00000074310rbfox3b9779.464ENSHBUG00000018099rbfox3b8578.275Haplochromis_burtoni
ENSDARG00000074310rbfox3b9773.894ENSHBUG00000023098-9967.151Haplochromis_burtoni
ENSDARG00000074310rbfox3b9669.262ENSHGLG00000008679RBFOX310063.174Heterocephalus_glaber_female
ENSDARG00000074310rbfox3b9764.372ENSHGLG00100014739RBFOX38770.229Heterocephalus_glaber_male
ENSDARG00000074310rbfox3b9369.338ENSHCOG00000001863RBFOX39469.205Hippocampus_comes
ENSDARG00000074310rbfox3b9671.875ENSHCOG00000007444RBFOX37973.770Hippocampus_comes
ENSDARG00000074310rbfox3b9687.047ENSIPUG00000012010rbfox3a9573.016Ictalurus_punctatus
ENSDARG00000074310rbfox3b10076.214ENSIPUG00000021966rbfox3b9382.661Ictalurus_punctatus
ENSDARG00000074310rbfox3b9661.421ENSSTOG00000026817RBFOX310062.295Ictidomys_tridecemlineatus
ENSDARG00000074310rbfox3b8876.652ENSJJAG00000014167Rbfox310064.742Jaculus_jaculus
ENSDARG00000074310rbfox3b9680.808ENSKMAG00000006726rbfox3b8381.333Kryptolebias_marmoratus
ENSDARG00000074310rbfox3b9682.000ENSLBEG00000004030rbfox3b9982.667Labrus_bergylta
ENSDARG00000074310rbfox3b9691.192ENSLBEG00000022508-8673.016Labrus_bergylta
ENSDARG00000074310rbfox3b6770.423ENSLACG00000000021-9561.957Latimeria_chalumnae
ENSDARG00000074310rbfox3b9769.608ENSLACG00000018409-10056.633Latimeria_chalumnae
ENSDARG00000074310rbfox3b10070.892ENSLOCG00000012267rbfox3a9574.684Lepisosteus_oculatus
ENSDARG00000074310rbfox3b9768.293ENSLAFG00000016623RBFOX310059.358Loxodonta_africana
ENSDARG00000074310rbfox3b9664.017ENSMFAG00000002247RBFOX38380.851Macaca_fascicularis
ENSDARG00000074310rbfox3b9673.094ENSMMUG00000023028RBFOX310072.843Macaca_mulatta
ENSDARG00000074310rbfox3b9672.646ENSMNEG00000041147RBFOX310072.524Macaca_nemestrina
ENSDARG00000074310rbfox3b9673.094ENSMLEG00000025686RBFOX310072.843Mandrillus_leucophaeus
ENSDARG00000074310rbfox3b9769.469ENSMAMG00000020600-9270.126Mastacembelus_armatus
ENSDARG00000074310rbfox3b9682.034ENSMAMG00000019810rbfox3b9982.034Mastacembelus_armatus
ENSDARG00000074310rbfox3b9670.588ENSMZEG00005003055-6681.529Maylandia_zebra
ENSDARG00000074310rbfox3b9779.464ENSMZEG00005000781rbfox3b8578.275Maylandia_zebra
ENSDARG00000074310rbfox3b9768.473ENSMGAG00000005600RBFOX37872.464Meleagris_gallopavo
ENSDARG00000074310rbfox3b9670.000ENSMAUG00000013543Rbfox38381.250Mesocricetus_auratus
ENSDARG00000074310rbfox3b9676.577ENSMICG00000014898RBFOX310073.077Microcebus_murinus
ENSDARG00000074310rbfox3b8582.759ENSMOCG00000015373Rbfox310063.636Microtus_ochrogaster
ENSDARG00000074310rbfox3b9677.679ENSMMOG00000020193rbfox3b8578.344Mola_mola
ENSDARG00000074310rbfox3b9673.094ENSMODG00000002089RBFOX38773.077Monodelphis_domestica
ENSDARG00000074310rbfox3b9874.236ENSMALG00000018270-9973.312Monopterus_albus
ENSDARG00000074310rbfox3b9792.228ENSMALG00000020407rbfox3b9075.684Monopterus_albus
ENSDARG00000074310rbfox3b9770.796MGP_CAROLIEiJ_G0017487Rbfox39288.806Mus_caroli
ENSDARG00000074310rbfox3b9773.451ENSMUSG00000025576Rbfox39288.806Mus_musculus
ENSDARG00000074310rbfox3b9770.925MGP_PahariEiJ_G0018614Rbfox39289.552Mus_pahari
ENSDARG00000074310rbfox3b9770.796MGP_SPRETEiJ_G0018331Rbfox39288.806Mus_spretus
ENSDARG00000074310rbfox3b9768.780ENSMPUG00000012319RBFOX39860.800Mustela_putorius_furo
ENSDARG00000074310rbfox3b5763.415ENSMLUG00000008895-9964.029Myotis_lucifugus
ENSDARG00000074310rbfox3b8579.310ENSNGAG00000018006Rbfox310063.939Nannospalax_galili
ENSDARG00000074310rbfox3b9678.378ENSNBRG00000010102rbfox3b8577.885Neolamprologus_brichardi
ENSDARG00000074310rbfox3b9672.542ENSNBRG00000022885-8673.064Neolamprologus_brichardi
ENSDARG00000074310rbfox3b9269.430ENSNLEG00000000153-9655.853Nomascus_leucogenys
ENSDARG00000074310rbfox3b8778.723ENSMEUG00000004218-8382.979Notamacropus_eugenii
ENSDARG00000074310rbfox3b9067.368ENSOPRG00000016279-7971.264Ochotona_princeps
ENSDARG00000074310rbfox3b9676.339ENSODEG00000009433RBFOX310072.204Octodon_degus
ENSDARG00000074310rbfox3b9679.730ENSONIG00000009549rbfox3b10066.485Oreochromis_niloticus
ENSDARG00000074310rbfox3b9675.000ENSONIG00000007282-9272.698Oreochromis_niloticus
ENSDARG00000074310rbfox3b9652.239ENSOCUG00000014217RBFOX37750.526Oryctolagus_cuniculus
ENSDARG00000074310rbfox3b9779.911ENSORLG00000000905rbfox3b6878.981Oryzias_latipes
ENSDARG00000074310rbfox3b9693.194ENSORLG00020018030rbfox3b10079.933Oryzias_latipes_hni
ENSDARG00000074310rbfox3b9692.670ENSORLG00015009200rbfox3b9981.915Oryzias_latipes_hsok
ENSDARG00000074310rbfox3b9770.852ENSOMEG00000014677rbfox3b9173.930Oryzias_melastigma
ENSDARG00000074310rbfox3b9772.124ENSOGAG00000029595RBFOX39862.943Otolemur_garnettii
ENSDARG00000074310rbfox3b9755.189ENSOARG00000002908RBFOX310047.194Ovis_aries
ENSDARG00000074310rbfox3b8573.034ENSPPAG00000025383RBFOX39972.028Pan_paniscus
ENSDARG00000074310rbfox3b9667.382ENSPPRG00000007819RBFOX310065.635Panthera_pardus
ENSDARG00000074310rbfox3b9673.094ENSPTRG00000009727RBFOX310072.843Pan_troglodytes
ENSDARG00000074310rbfox3b9673.094ENSPANG00000019837RBFOX310072.843Papio_anubis
ENSDARG00000074310rbfox3b9780.412ENSPKIG00000022633-9364.935Paramormyrops_kingsleyae
ENSDARG00000074310rbfox3b9791.282ENSPKIG00000010299rbfox3a8977.143Paramormyrops_kingsleyae
ENSDARG00000074310rbfox3b9774.272ENSPMGG00000008000rbfox3b7880.237Periophthalmus_magnuspinnatus
ENSDARG00000074310rbfox3b8582.759ENSPEMG00000010500Rbfox310063.939Peromyscus_maniculatus_bairdii
ENSDARG00000074310rbfox3b7469.512ENSPMAG00000008689rbfox3b9370.000Petromyzon_marinus
ENSDARG00000074310rbfox3b9688.021ENSPCIG00000005766RBFOX310075.801Phascolarctos_cinereus
ENSDARG00000074310rbfox3b9582.609ENSPFOG00000018294rbfox3b10070.029Poecilia_formosa
ENSDARG00000074310rbfox3b9773.214ENSPLAG00000000481rbfox3b7488.444Poecilia_latipinna
ENSDARG00000074310rbfox3b9692.670ENSPMEG00000022997rbfox3b10081.560Poecilia_mexicana
ENSDARG00000074310rbfox3b9779.911ENSPREG00000012886rbfox3b9078.662Poecilia_reticulata
ENSDARG00000074310rbfox3b8373.714ENSPPYG00000008704RBFOX310056.765Pongo_abelii
ENSDARG00000074310rbfox3b8275.862ENSPCAG00000001401RBFOX38375.000Procavia_capensis
ENSDARG00000074310rbfox3b9675.104ENSPCOG00000012689RBFOX38380.851Propithecus_coquereli
ENSDARG00000074310rbfox3b8279.310ENSPVAG00000015243RBFOX38375.510Pteropus_vampyrus
ENSDARG00000074310rbfox3b9772.131ENSPNYG00000009079-8372.638Pundamilia_nyererei
ENSDARG00000074310rbfox3b9774.757ENSPNYG00000010414rbfox3b8473.333Pundamilia_nyererei
ENSDARG00000074310rbfox3b9687.565ENSPNAG00000002889rbfox3a8974.000Pygocentrus_nattereri
ENSDARG00000074310rbfox3b9785.492ENSPNAG00000018173rbfox3b9378.439Pygocentrus_nattereri
ENSDARG00000074310rbfox3b9671.111ENSRNOG00000003386Rbfox310071.746Rattus_norvegicus
ENSDARG00000074310rbfox3b9673.094ENSRBIG00000040449RBFOX38776.412Rhinopithecus_bieti
ENSDARG00000074310rbfox3b9673.094ENSRROG00000000766RBFOX310072.843Rhinopithecus_roxellana
ENSDARG00000074310rbfox3b9671.749ENSSBOG00000031591RBFOX310071.885Saimiri_boliviensis_boliviensis
ENSDARG00000074310rbfox3b9688.021ENSSHAG00000016076RBFOX310075.801Sarcophilus_harrisii
ENSDARG00000074310rbfox3b9583.684ENSSFOG00015004716RBFOX310064.667Scleropages_formosus
ENSDARG00000074310rbfox3b9687.565ENSSFOG00015023260rbfox3a10075.828Scleropages_formosus
ENSDARG00000074310rbfox3b9389.362ENSSMAG00000019052-10072.063Scophthalmus_maximus
ENSDARG00000074310rbfox3b9692.670ENSSMAG00000012618rbfox3b7574.848Scophthalmus_maximus
ENSDARG00000074310rbfox3b9692.670ENSSDUG00000023183rbfox3b10081.915Seriola_dumerili
ENSDARG00000074310rbfox3b9770.222ENSSDUG00000015801-9662.391Seriola_dumerili
ENSDARG00000074310rbfox3b9680.392ENSSLDG00000000149rbfox3b8578.914Seriola_lalandi_dorsalis
ENSDARG00000074310rbfox3b9375.685ENSSLDG00000016098-9072.500Seriola_lalandi_dorsalis
ENSDARG00000074310rbfox3b9489.362ENSSPUG00000011733RBFOX310073.333Sphenodon_punctatus
ENSDARG00000074310rbfox3b9676.667ENSSPAG00000017571rbfox3b8477.000Stegastes_partitus
ENSDARG00000074310rbfox3b8272.527ENSSPAG00000004898-8565.614Stegastes_partitus
ENSDARG00000074310rbfox3b9772.687ENSSSCG00000039498RBFOX310060.423Sus_scrofa
ENSDARG00000074310rbfox3b9773.799ENSTRUG00000004894rbfox3b9868.286Takifugu_rubripes
ENSDARG00000074310rbfox3b9773.301ENSTNIG00000011278rbfox3b10062.843Tetraodon_nigroviridis
ENSDARG00000074310rbfox3b7958.120ENSTBEG00000004296-10046.216Tupaia_belangeri
ENSDARG00000074310rbfox3b9654.074ENSTTRG00000003676RBFOX38380.851Tursiops_truncatus
ENSDARG00000074310rbfox3b9673.094ENSUAMG00000004668RBFOX310072.115Ursus_americanus
ENSDARG00000074310rbfox3b9772.444ENSVVUG00000017864RBFOX310071.795Vulpes_vulpes
ENSDARG00000074310rbfox3b9769.608ENSXETG00000020236rbfox39951.282Xenopus_tropicalis
ENSDARG00000074310rbfox3b9580.872ENSXCOG00000018262rbfox3b10081.544Xiphophorus_couchianus
ENSDARG00000074310rbfox3b9792.228ENSXMAG00000012939rbfox3b10077.955Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus26952657.IDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0007399nervous system development21873635.IBAProcess
GO:0043484regulation of RNA splicing-IEAProcess

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