EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000074415 (Gene tree)
Gene ID: 796610
Gene Symbol: zgc:171482
Alias: -
Full Name: zgc:171482
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 174390 bases
Position: chr13:39656610-39830999
Accession: ZDB-GENE-080204-84
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000098098	zf-met	PF12874.7	2e-28	1	4
ENSDARP00000098098	zf-met	PF12874.7	2e-28	2	4
ENSDARP00000098098	zf-met	PF12874.7	2e-28	3	4
ENSDARP00000098098	zf-met	PF12874.7	2e-28	4	4
ENSDARP00000116257	zf-met	PF12874.7	8e-16	1	2
ENSDARP00000116257	zf-met	PF12874.7	8e-16	2	2
ENSDARP00000117708	zf-met	PF12874.7	8.3e-15	1	2
ENSDARP00000117708	zf-met	PF12874.7	8.3e-15	2	2
ENSDARP00000098098	zf-C2H2_jaz	PF12171.8	3.7e-21	1	2
ENSDARP00000098098	zf-C2H2_jaz	PF12171.8	3.7e-21	2	2
ENSDARP00000117708	zf-C2H2_jaz	PF12171.8	2.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000141645	-	234	-	ENSDARP00000116257	78 (aa)	-	F1R3A5
ENSDART00000115089	-	2331	XM_005157052	ENSDARP00000098098	233 (aa)	XP_005157109	F1QFB4
ENSDART00000138981	-	1224	XM_017358808	ENSDARP00000117708	134 (aa)	XP_017214297	A9JST7

Gene Model

Click here to download ENSDARG00000074415's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000074415's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000074415	zgc:171482	97	45.570	ENSDARG00000060695	znf346	69	45.495
ENSDARG00000074415	zgc:171482	86	73.043	ENSDARG00000061419	zmat4b	99	61.739
ENSDARG00000074415	zgc:171482	99	72.727	ENSDARG00000092987	zmat4a	99	72.174

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000074415	zgc:171482	97	84.513	ENSAPOG00000019970	zgc:171482	99	84.513	Acanthochromis_polyacanthus
ENSDARG00000074415	zgc:171482	100	85.075	ENSACIG00000021512	zgc:171482	98	85.075	Amphilophus_citrinellus
ENSDARG00000074415	zgc:171482	98	84.733	ENSAOCG00000000751	zgc:171482	95	84.733	Amphiprion_ocellaris
ENSDARG00000074415	zgc:171482	91	89.344	ENSAPEG00000014154	zgc:171482	88	89.344	Amphiprion_percula
ENSDARG00000074415	zgc:171482	97	82.301	ENSATEG00000001371	zgc:171482	99	83.550	Anabas_testudineus
ENSDARG00000074415	zgc:171482	91	89.344	ENSACLG00000010511	zgc:171482	85	89.344	Astatotilapia_calliptera
ENSDARG00000074415	zgc:171482	99	100.000	ENSAMXG00000002299	zgc:171482	99	88.053	Astyanax_mexicanus
ENSDARG00000074415	zgc:171482	99	85.897	ENSCSEG00000006509	zgc:171482	99	66.860	Cynoglossus_semilaevis
ENSDARG00000074415	zgc:171482	97	82.743	ENSCVAG00000013606	zgc:171482	99	82.743	Cyprinodon_variegatus
ENSDARG00000074415	zgc:171482	98	83.969	ENSELUG00000021817	zgc:171482	90	88.000	Esox_lucius
ENSDARG00000074415	zgc:171482	97	56.790	ENSELUG00000021794	-	84	69.231	Esox_lucius
ENSDARG00000074415	zgc:171482	88	73.109	ENSELUG00000017517	-	60	84.444	Esox_lucius
ENSDARG00000074415	zgc:171482	99	93.333	ENSFHEG00000002233	zgc:171482	99	81.416	Fundulus_heteroclitus
ENSDARG00000074415	zgc:171482	91	90.164	ENSGMOG00000010508	zgc:171482	99	83.628	Gadus_morhua
ENSDARG00000074415	zgc:171482	99	91.026	ENSGAFG00000009398	zgc:171482	76	92.308	Gambusia_affinis
ENSDARG00000074415	zgc:171482	99	91.489	ENSGACG00000007680	zgc:171482	99	83.983	Gasterosteus_aculeatus
ENSDARG00000074415	zgc:171482	91	89.344	ENSHBUG00000023289	zgc:171482	92	89.344	Haplochromis_burtoni
ENSDARG00000074415	zgc:171482	87	89.744	ENSHCOG00000018086	zgc:171482	93	85.484	Hippocampus_comes
ENSDARG00000074415	zgc:171482	90	95.833	ENSIPUG00000000361	zgc:171482	87	95.833	Ictalurus_punctatus
ENSDARG00000074415	zgc:171482	97	58.025	ENSIPUG00000000356	-	83	81.967	Ictalurus_punctatus
ENSDARG00000074415	zgc:171482	91	88.525	ENSKMAG00000005077	zgc:171482	87	79.661	Kryptolebias_marmoratus
ENSDARG00000074415	zgc:171482	100	82.963	ENSLBEG00000023823	zgc:171482	96	82.963	Labrus_bergylta
ENSDARG00000074415	zgc:171482	99	84.848	ENSLOCG00000008863	zgc:171482	97	87.719	Lepisosteus_oculatus
ENSDARG00000074415	zgc:171482	97	89.256	ENSMAMG00000001031	zgc:171482	94	89.256	Mastacembelus_armatus
ENSDARG00000074415	zgc:171482	97	82.174	ENSMZEG00005027721	zgc:171482	99	82.174	Maylandia_zebra
ENSDARG00000074415	zgc:171482	91	90.164	ENSMMOG00000010523	zgc:171482	93	90.164	Mola_mola
ENSDARG00000074415	zgc:171482	99	97.778	ENSMALG00000017883	zgc:171482	99	84.979	Monopterus_albus
ENSDARG00000074415	zgc:171482	96	83.721	ENSNBRG00000021035	zgc:171482	96	83.721	Neolamprologus_brichardi
ENSDARG00000074415	zgc:171482	98	84.615	ENSONIG00000018365	zgc:171482	99	84.615	Oreochromis_niloticus
ENSDARG00000074415	zgc:171482	99	93.333	ENSORLG00000007607	zgc:171482	99	82.456	Oryzias_latipes
ENSDARG00000074415	zgc:171482	98	81.061	ENSORLG00020003563	zgc:171482	99	81.140	Oryzias_latipes_hni
ENSDARG00000074415	zgc:171482	99	93.333	ENSORLG00015008552	zgc:171482	99	82.456	Oryzias_latipes_hsok
ENSDARG00000074415	zgc:171482	91	88.525	ENSOMEG00000003526	zgc:171482	86	88.525	Oryzias_melastigma
ENSDARG00000074415	zgc:171482	90	91.667	ENSPKIG00000015911	-	86	88.710	Paramormyrops_kingsleyae
ENSDARG00000074415	zgc:171482	82	88.182	ENSPKIG00000016244	zgc:171482	94	79.545	Paramormyrops_kingsleyae
ENSDARG00000074415	zgc:171482	99	89.583	ENSPMGG00000020230	zgc:171482	100	82.917	Periophthalmus_magnuspinnatus
ENSDARG00000074415	zgc:171482	99	95.455	ENSPFOG00000001974	zgc:171482	99	83.333	Poecilia_formosa
ENSDARG00000074415	zgc:171482	97	84.211	ENSPLAG00000003327	zgc:171482	99	84.211	Poecilia_latipinna
ENSDARG00000074415	zgc:171482	100	89.256	ENSPMEG00000004988	zgc:171482	99	79.913	Poecilia_mexicana
ENSDARG00000074415	zgc:171482	91	88.525	ENSPREG00000019241	zgc:171482	88	89.256	Poecilia_reticulata
ENSDARG00000074415	zgc:171482	91	89.344	ENSPNYG00000007773	zgc:171482	85	89.344	Pundamilia_nyererei
ENSDARG00000074415	zgc:171482	99	97.674	ENSPNAG00000007619	zgc:171482	100	89.407	Pygocentrus_nattereri
ENSDARG00000074415	zgc:171482	90	90.833	ENSSFOG00015021238	zgc:171482	88	86.923	Scleropages_formosus
ENSDARG00000074415	zgc:171482	90	88.333	ENSSFOG00015016149	zgc:171482	98	86.885	Scleropages_formosus
ENSDARG00000074415	zgc:171482	91	88.525	ENSSMAG00000002715	zgc:171482	78	89.256	Scophthalmus_maximus
ENSDARG00000074415	zgc:171482	91	89.344	ENSSDUG00000008773	zgc:171482	93	85.606	Seriola_dumerili
ENSDARG00000074415	zgc:171482	100	82.090	ENSSLDG00000019510	zgc:171482	93	85.606	Seriola_lalandi_dorsalis
ENSDARG00000074415	zgc:171482	96	86.719	ENSSPAG00000013724	zgc:171482	100	86.719	Stegastes_partitus
ENSDARG00000074415	zgc:171482	86	92.174	ENSTRUG00000005705	zgc:171482	80	92.174	Takifugu_rubripes
ENSDARG00000074415	zgc:171482	97	73.362	ENSTNIG00000008679	zgc:171482	99	73.362	Tetraodon_nigroviridis
ENSDARG00000074415	zgc:171482	78	79.245	ENSXETG00000013525	zmat4	77	79.245	Xenopus_tropicalis
ENSDARG00000074415	zgc:171482	95	90.667	ENSXMAG00000002641	zgc:171482	99	60.465	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function