EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000074675 (Gene tree)
Gene ID: 792831
Gene Symbol: pan2
Alias: fc27e10|si:dkey-126g1.10|wu:fc27e10
Full Name: poly(A) specific ribonuclease subunit PAN2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 28217 bases
Position: chr23:31979602-32007818
Accession: ZDB-GENE-030131-3113
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000118293	RNase_T	PF00929.24	7e-20	1	1
ENSDARP00000151470	RNase_T	PF00929.24	7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000140351	-	4146	XM_001919965	ENSDARP00000118293	1202 (aa)	XP_001920000	E9QJN4
ENSDART00000187080	-	3609	-	ENSDARP00000151470	1202 (aa)	-	E9QJN4

Gene Model

Click here to download ENSDARG00000074675's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000074675's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000074675	pan2	100	87.572	ENSAPOG00000022955	pan2	100	88.070	Acanthochromis_polyacanthus
ENSDARG00000074675	pan2	99	75.000	ENSAMEG00000003824	PAN2	100	74.835	Ailuropoda_melanoleuca
ENSDARG00000074675	pan2	99	67.707	ENSACIG00000012858	PAN2	99	67.707	Amphilophus_citrinellus
ENSDARG00000074675	pan2	99	83.612	ENSACIG00000013079	pan2	99	83.946	Amphilophus_citrinellus
ENSDARG00000074675	pan2	100	87.572	ENSAOCG00000022334	pan2	100	87.738	Amphiprion_ocellaris
ENSDARG00000074675	pan2	100	87.283	ENSAPEG00000022760	pan2	100	87.448	Amphiprion_percula
ENSDARG00000074675	pan2	99	87.302	ENSATEG00000024030	pan2	100	87.719	Anabas_testudineus
ENSDARG00000074675	pan2	94	75.795	ENSAPLG00000005195	PAN2	100	75.530	Anas_platyrhynchos
ENSDARG00000074675	pan2	99	75.103	ENSACAG00000007067	PAN2	100	75.021	Anolis_carolinensis
ENSDARG00000074675	pan2	99	74.587	ENSANAG00000036468	PAN2	98	81.572	Aotus_nancymaae
ENSDARG00000074675	pan2	98	65.709	ENSACLG00000023821	pan2	99	65.511	Astatotilapia_calliptera
ENSDARG00000074675	pan2	100	86.435	ENSACLG00000023674	pan2	100	86.435	Astatotilapia_calliptera
ENSDARG00000074675	pan2	99	88.167	ENSAMXG00000005418	pan2	98	88.304	Astyanax_mexicanus
ENSDARG00000074675	pan2	99	74.917	ENSBTAG00000004376	PAN2	100	74.752	Bos_taurus
ENSDARG00000074675	pan2	99	74.422	ENSCJAG00000011141	PAN2	100	74.257	Callithrix_jacchus
ENSDARG00000074675	pan2	99	74.587	ENSCAFG00000000119	PAN2	95	82.016	Canis_familiaris
ENSDARG00000074675	pan2	98	74.770	ENSCAFG00020024865	PAN2	100	73.532	Canis_lupus_dingo
ENSDARG00000074675	pan2	99	74.016	ENSCHIG00000026935	PAN2	100	73.770	Capra_hircus
ENSDARG00000074675	pan2	99	73.628	ENSTSYG00000006927	PAN2	98	81.572	Carlito_syrichta
ENSDARG00000074675	pan2	99	74.569	ENSCPOG00000014918	PAN2	100	74.159	Cavia_porcellus
ENSDARG00000074675	pan2	99	74.587	ENSCCAG00000036637	PAN2	98	81.301	Cebus_capucinus
ENSDARG00000074675	pan2	99	74.422	ENSCATG00000045076	PAN2	98	81.744	Cercocebus_atys
ENSDARG00000074675	pan2	99	75.145	ENSCLAG00000011700	PAN2	100	74.405	Chinchilla_lanigera
ENSDARG00000074675	pan2	99	74.257	ENSCSAG00000005173	PAN2	100	74.092	Chlorocebus_sabaeus
ENSDARG00000074675	pan2	99	76.013	ENSCPBG00000014029	PAN2	100	75.931	Chrysemys_picta_bellii
ENSDARG00000074675	pan2	91	46.921	ENSCSAVG00000003833	-	97	61.808	Ciona_savignyi
ENSDARG00000074675	pan2	99	73.124	ENSCANG00000017798	PAN2	100	72.960	Colobus_angolensis_palliatus
ENSDARG00000074675	pan2	99	74.752	ENSCGRG00001019707	Pan2	100	74.547	Cricetulus_griseus_chok1gshd
ENSDARG00000074675	pan2	99	73.956	ENSCGRG00000009996	Pan2	100	73.710	Cricetulus_griseus_crigri
ENSDARG00000074675	pan2	100	82.104	ENSCSEG00000021529	pan2	100	82.601	Cynoglossus_semilaevis
ENSDARG00000074675	pan2	100	85.833	ENSCVAG00000010197	pan2	100	85.584	Cyprinodon_variegatus
ENSDARG00000074675	pan2	99	75.124	ENSDNOG00000010940	PAN2	100	74.959	Dasypus_novemcinctus
ENSDARG00000074675	pan2	93	41.887	FBgn0033352	PAN2	96	41.584	Drosophila_melanogaster
ENSDARG00000074675	pan2	75	85.632	ENSETEG00000012041	PAN2	81	86.804	Echinops_telfairi
ENSDARG00000074675	pan2	98	56.071	ENSEBUG00000002773	pan2	98	55.987	Eptatretus_burgeri
ENSDARG00000074675	pan2	99	74.508	ENSEASG00005005235	PAN2	100	74.344	Equus_asinus_asinus
ENSDARG00000074675	pan2	99	74.917	ENSECAG00000019814	PAN2	100	74.752	Equus_caballus
ENSDARG00000074675	pan2	99	87.014	ENSELUG00000024604	pan2	99	87.014	Esox_lucius
ENSDARG00000074675	pan2	99	74.917	ENSFCAG00000012021	PAN2	100	74.752	Felis_catus
ENSDARG00000074675	pan2	99	75.440	ENSFALG00000000464	PAN2	98	75.356	Ficedula_albicollis
ENSDARG00000074675	pan2	99	74.529	ENSFDAG00000017104	PAN2	100	74.283	Fukomys_damarensis
ENSDARG00000074675	pan2	90	83.333	ENSFHEG00000000157	pan2	96	83.333	Fundulus_heteroclitus
ENSDARG00000074675	pan2	100	83.182	ENSGMOG00000007249	pan2	99	83.759	Gadus_morhua
ENSDARG00000074675	pan2	99	76.781	ENSGALG00000031512	PAN2	100	75.931	Gallus_gallus
ENSDARG00000074675	pan2	100	85.915	ENSGAFG00000000284	pan2	100	85.915	Gambusia_affinis
ENSDARG00000074675	pan2	100	84.033	ENSGACG00000010722	pan2	99	84.527	Gasterosteus_aculeatus
ENSDARG00000074675	pan2	99	75.352	ENSGAGG00000007868	PAN2	100	75.269	Gopherus_agassizii
ENSDARG00000074675	pan2	99	74.422	ENSGGOG00000009115	PAN2	98	81.744	Gorilla_gorilla
ENSDARG00000074675	pan2	100	86.722	ENSHBUG00000005234	pan2	100	86.722	Haplochromis_burtoni
ENSDARG00000074675	pan2	99	73.810	ENSHGLG00000005647	PAN2	99	73.563	Heterocephalus_glaber_female
ENSDARG00000074675	pan2	99	73.645	ENSHGLG00100014057	PAN2	99	73.399	Heterocephalus_glaber_male
ENSDARG00000074675	pan2	100	84.393	ENSHCOG00000007920	pan2	100	84.641	Hippocampus_comes
ENSDARG00000074675	pan2	100	88.474	ENSIPUG00000011065	PAN2	100	88.474	Ictalurus_punctatus
ENSDARG00000074675	pan2	99	68.126	ENSSTOG00000015974	PAN2	100	74.184	Ictidomys_tridecemlineatus
ENSDARG00000074675	pan2	99	74.257	ENSJJAG00000013044	Pan2	98	73.806	Jaculus_jaculus
ENSDARG00000074675	pan2	100	85.833	ENSKMAG00000006192	pan2	100	86.164	Kryptolebias_marmoratus
ENSDARG00000074675	pan2	93	85.752	ENSLBEG00000015763	pan2	96	85.838	Labrus_bergylta
ENSDARG00000074675	pan2	99	69.435	ENSLACG00000018694	PAN2	100	69.194	Latimeria_chalumnae
ENSDARG00000074675	pan2	100	85.655	ENSLOCG00000004333	pan2	99	85.408	Lepisosteus_oculatus
ENSDARG00000074675	pan2	99	72.578	ENSLAFG00000014873	PAN2	100	72.332	Loxodonta_africana
ENSDARG00000074675	pan2	99	74.257	ENSMFAG00000002293	PAN2	98	81.744	Macaca_fascicularis
ENSDARG00000074675	pan2	99	74.257	ENSMMUG00000013482	PAN2	97	81.744	Macaca_mulatta
ENSDARG00000074675	pan2	99	74.422	ENSMNEG00000033264	PAN2	98	81.744	Macaca_nemestrina
ENSDARG00000074675	pan2	99	74.422	ENSMLEG00000037388	PAN2	98	81.744	Mandrillus_leucophaeus
ENSDARG00000074675	pan2	99	87.562	ENSMAMG00000001624	pan2	100	87.562	Mastacembelus_armatus
ENSDARG00000074675	pan2	98	66.610	ENSMZEG00005026472	pan2	99	66.610	Maylandia_zebra
ENSDARG00000074675	pan2	100	86.435	ENSMZEG00005026462	pan2	100	86.435	Maylandia_zebra
ENSDARG00000074675	pan2	97	76.672	ENSMGAG00000001439	PAN2	99	76.501	Meleagris_gallopavo
ENSDARG00000074675	pan2	99	74.419	ENSMAUG00000012602	Pan2	99	74.169	Mesocricetus_auratus
ENSDARG00000074675	pan2	99	74.505	ENSMICG00000017661	PAN2	98	80.000	Microcebus_murinus
ENSDARG00000074675	pan2	99	74.257	ENSMOCG00000007191	Pan2	100	74.053	Microtus_ochrogaster
ENSDARG00000074675	pan2	99	86.348	ENSMMOG00000009313	pan2	97	86.348	Mola_mola
ENSDARG00000074675	pan2	99	86.942	ENSMALG00000013377	pan2	100	86.860	Monopterus_albus
ENSDARG00000074675	pan2	99	73.257	MGP_CAROLIEiJ_G0015930	Pan2	100	73.055	Mus_caroli
ENSDARG00000074675	pan2	99	73.863	ENSMUSG00000005682	Pan2	100	73.576	Mus_musculus
ENSDARG00000074675	pan2	99	73.421	MGP_PahariEiJ_G0031154	Pan2	100	73.219	Mus_pahari
ENSDARG00000074675	pan2	99	73.967	MGP_SPRETEiJ_G0016755	Pan2	100	73.762	Mus_spretus
ENSDARG00000074675	pan2	99	75.000	ENSMPUG00000001383	PAN2	100	74.835	Mustela_putorius_furo
ENSDARG00000074675	pan2	99	74.340	ENSMLUG00000006737	PAN2	100	74.257	Myotis_lucifugus
ENSDARG00000074675	pan2	99	74.505	ENSNGAG00000007930	Pan2	100	74.135	Nannospalax_galili
ENSDARG00000074675	pan2	92	92.558	ENSNBRG00000006585	pan2	99	92.558	Neolamprologus_brichardi
ENSDARG00000074675	pan2	99	70.462	ENSNLEG00000017499	PAN2	98	81.199	Nomascus_leucogenys
ENSDARG00000074675	pan2	99	76.218	ENSMEUG00000010125	PAN2	100	75.888	Notamacropus_eugenii
ENSDARG00000074675	pan2	99	73.745	ENSOPRG00000001468	PAN2	100	73.580	Ochotona_princeps
ENSDARG00000074675	pan2	99	74.304	ENSODEG00000007203	PAN2	100	74.059	Octodon_degus
ENSDARG00000074675	pan2	99	84.383	ENSONIG00000016732	pan2	100	84.383	Oreochromis_niloticus
ENSDARG00000074675	pan2	81	67.674	ENSOANG00000005151	PAN2	98	67.273	Ornithorhynchus_anatinus
ENSDARG00000074675	pan2	99	74.016	ENSOCUG00000007227	PAN2	100	73.770	Oryctolagus_cuniculus
ENSDARG00000074675	pan2	99	85.501	ENSORLG00000015195	pan2	100	85.418	Oryzias_latipes
ENSDARG00000074675	pan2	99	85.418	ENSORLG00020000277	pan2	100	85.336	Oryzias_latipes_hni
ENSDARG00000074675	pan2	99	85.170	ENSORLG00015005193	pan2	100	85.087	Oryzias_latipes_hsok
ENSDARG00000074675	pan2	99	85.336	ENSOMEG00000022087	pan2	100	85.418	Oryzias_melastigma
ENSDARG00000074675	pan2	99	73.813	ENSOGAG00000030620	PAN2	100	73.404	Otolemur_garnettii
ENSDARG00000074675	pan2	99	74.752	ENSOARG00000009379	PAN2	100	74.587	Ovis_aries
ENSDARG00000074675	pan2	99	74.340	ENSPPAG00000001208	PAN2	98	81.744	Pan_paniscus
ENSDARG00000074675	pan2	99	74.835	ENSPPRG00000021586	PAN2	100	74.670	Panthera_pardus
ENSDARG00000074675	pan2	99	71.182	ENSPTIG00000012494	PAN2	100	70.854	Panthera_tigris_altaica
ENSDARG00000074675	pan2	99	74.340	ENSPTRG00000052054	PAN2	98	81.744	Pan_troglodytes
ENSDARG00000074675	pan2	92	75.673	ENSPANG00000018906	PAN2	98	81.744	Papio_anubis
ENSDARG00000074675	pan2	100	84.934	ENSPKIG00000003973	pan2	100	84.934	Paramormyrops_kingsleyae
ENSDARG00000074675	pan2	99	72.915	ENSPSIG00000003267	PAN2	100	72.998	Pelodiscus_sinensis
ENSDARG00000074675	pan2	99	84.801	ENSPMGG00000023186	pan2	100	84.801	Periophthalmus_magnuspinnatus
ENSDARG00000074675	pan2	99	72.868	ENSPEMG00000018505	Pan2	100	72.876	Peromyscus_maniculatus_bairdii
ENSDARG00000074675	pan2	91	66.907	ENSPMAG00000004731	pan2	100	66.366	Petromyzon_marinus
ENSDARG00000074675	pan2	99	76.179	ENSPCIG00000024643	PAN2	100	75.931	Phascolarctos_cinereus
ENSDARG00000074675	pan2	100	86.081	ENSPFOG00000008392	pan2	100	86.081	Poecilia_formosa
ENSDARG00000074675	pan2	100	85.998	ENSPLAG00000009198	pan2	100	85.998	Poecilia_latipinna
ENSDARG00000074675	pan2	100	86.164	ENSPMEG00000001484	pan2	100	86.164	Poecilia_mexicana
ENSDARG00000074675	pan2	100	86.081	ENSPREG00000000900	pan2	100	86.081	Poecilia_reticulata
ENSDARG00000074675	pan2	89	76.923	ENSPPYG00000004656	PAN2	99	76.923	Pongo_abelii
ENSDARG00000074675	pan2	92	76.058	ENSPCAG00000011047	PAN2	99	75.878	Procavia_capensis
ENSDARG00000074675	pan2	99	74.587	ENSPCOG00000018263	PAN2	100	74.505	Propithecus_coquereli
ENSDARG00000074675	pan2	94	72.828	ENSPVAG00000007591	PAN2	94	72.626	Pteropus_vampyrus
ENSDARG00000074675	pan2	99	86.706	ENSPNYG00000002629	pan2	99	86.706	Pundamilia_nyererei
ENSDARG00000074675	pan2	100	90.149	ENSPNAG00000027140	pan2	100	90.232	Pygocentrus_nattereri
ENSDARG00000074675	pan2	99	74.132	ENSRNOG00000032441	Pan2	100	73.845	Rattus_norvegicus
ENSDARG00000074675	pan2	99	74.257	ENSRBIG00000029591	PAN2	98	81.199	Rhinopithecus_bieti
ENSDARG00000074675	pan2	99	74.257	ENSRROG00000041950	PAN2	98	81.471	Rhinopithecus_roxellana
ENSDARG00000074675	pan2	99	74.422	ENSSBOG00000027343	PAN2	98	81.301	Saimiri_boliviensis_boliviensis
ENSDARG00000074675	pan2	92	76.203	ENSSHAG00000000122	PAN2	100	77.111	Sarcophilus_harrisii
ENSDARG00000074675	pan2	100	85.596	ENSSFOG00015017740	pan2	100	85.679	Scleropages_formosus
ENSDARG00000074675	pan2	100	85.243	ENSSMAG00000020901	pan2	100	85.903	Scophthalmus_maximus
ENSDARG00000074675	pan2	100	86.870	ENSSDUG00000001840	pan2	100	87.448	Seriola_dumerili
ENSDARG00000074675	pan2	100	87.324	ENSSLDG00000013866	pan2	100	87.904	Seriola_lalandi_dorsalis
ENSDARG00000074675	pan2	92	75.028	ENSSARG00000013350	PAN2	92	74.805	Sorex_araneus
ENSDARG00000074675	pan2	92	77.338	ENSSPUG00000004270	PAN2	99	77.248	Sphenodon_punctatus
ENSDARG00000074675	pan2	100	86.705	ENSSPAG00000019970	pan2	100	87.283	Stegastes_partitus
ENSDARG00000074675	pan2	99	74.587	ENSSSCG00000000393	PAN2	100	74.422	Sus_scrofa
ENSDARG00000074675	pan2	100	85.136	ENSTRUG00000014260	pan2	100	84.971	Takifugu_rubripes
ENSDARG00000074675	pan2	100	84.971	ENSTNIG00000012537	pan2	99	85.467	Tetraodon_nigroviridis
ENSDARG00000074675	pan2	80	74.900	ENSTTRG00000007150	PAN2	80	74.635	Tursiops_truncatus
ENSDARG00000074675	pan2	99	74.856	ENSUAMG00000026522	PAN2	100	74.691	Ursus_americanus
ENSDARG00000074675	pan2	99	74.283	ENSUMAG00000017020	PAN2	100	74.120	Ursus_maritimus
ENSDARG00000074675	pan2	79	92.611	ENSVPAG00000007309	PAN2	84	92.611	Vicugna_pacos
ENSDARG00000074675	pan2	99	74.587	ENSVVUG00000021878	PAN2	100	74.422	Vulpes_vulpes
ENSDARG00000074675	pan2	98	74.769	ENSXETG00000009434	pan2	100	74.348	Xenopus_tropicalis
ENSDARG00000074675	pan2	99	80.913	ENSXCOG00000014391	pan2	100	80.996	Xiphophorus_couchianus
ENSDARG00000074675	pan2	100	85.915	ENSXMAG00000011661	pan2	100	86.081	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	-	IEA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0031251	PAN complex	21873635.	IBA	Component
GO:0031251	PAN complex	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function