EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000074758 (Gene tree)
Gene ID
336679
Gene Symbol
csde1
Alias
fa92c07|si:ch211-261n11.2|wu:fa92c07|wu:fa97c10|wu:fb53f07|wu:fb78d03
Full Name
cold shock domain containing E1%2C RNA-binding
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
20817 bases
Position
chr8:22521729-22542545
Accession
ZDB-GENE-030131-8623
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000116773CSDPF00313.226.7e-8115
ENSDARP00000116773CSDPF00313.226.7e-8125
ENSDARP00000116773CSDPF00313.226.7e-8135
ENSDARP00000116773CSDPF00313.226.7e-8145
ENSDARP00000116773CSDPF00313.226.7e-8155
ENSDARP00000156900CSDPF00313.229.7e-8115
ENSDARP00000156900CSDPF00313.229.7e-8125
ENSDARP00000156900CSDPF00313.229.7e-8135
ENSDARP00000156900CSDPF00313.229.7e-8145
ENSDARP00000156900CSDPF00313.229.7e-8155
ENSDARP00000156947CSDPF00313.222.1e-8015
ENSDARP00000156947CSDPF00313.222.1e-8025
ENSDARP00000156947CSDPF00313.222.1e-8035
ENSDARP00000156947CSDPF00313.222.1e-8045
ENSDARP00000156947CSDPF00313.222.1e-8055
ENSDARP00000155984CSDPF00313.222.7e-8015
ENSDARP00000155984CSDPF00313.222.7e-8025
ENSDARP00000155984CSDPF00313.222.7e-8035
ENSDARP00000155984CSDPF00313.222.7e-8045
ENSDARP00000155984CSDPF00313.222.7e-8055
ENSDARP00000112965CSDPF00313.222.7e-3712
ENSDARP00000112965CSDPF00313.222.7e-3722
ENSDARP00000116278CSDPF00313.228.6e-3713
ENSDARP00000116278CSDPF00313.228.6e-3723
ENSDARP00000116278CSDPF00313.228.6e-3733
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000144041-1052-ENSDARP00000112965278 (aa)-E9QCU5
ENSDART00000183297-3383XM_017357283ENSDARP00000155984869 (aa)XP_017212772A0A2R8QRZ0
ENSDART00000135640-582--- (aa)--
ENSDART00000185981-3398XM_021478191ENSDARP00000156947874 (aa)XP_021333866A0A2R8QTF0
ENSDART00000140606-1131-ENSDARP00000116278377 (aa)-F1R386
ENSDART00000132680-604--- (aa)--
ENSDART00000182588-2490-ENSDARP00000156900829 (aa)-A0A2R8QTS1
ENSDART00000134542-4654XM_017357286ENSDARP00000116773798 (aa)XP_017212775E9QFH8
Gene Model
Click here to download ENSDARG00000074758's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000074758's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000074758csde19884.252ENSG00000009307CSDE19493.750Homo_sapiens
ENSDARG00000074758csde110089.568ENSAPOG00000015538csde110087.591Acanthochromis_polyacanthus
ENSDARG00000074758csde110074.468ENSAMEG00000017129CSDE19971.230Ailuropoda_melanoleuca
ENSDARG00000074758csde19196.610ENSACIG00000015175csde19996.610Amphilophus_citrinellus
ENSDARG00000074758csde110089.568ENSAOCG00000011510csde110084.355Amphiprion_ocellaris
ENSDARG00000074758csde110089.928ENSAPEG00000007194csde110087.653Amphiprion_percula
ENSDARG00000074758csde110085.714ENSATEG00000003864csde110083.229Anabas_testudineus
ENSDARG00000074758csde110077.513ENSAPLG00000008797CSDE110077.096Anas_platyrhynchos
ENSDARG00000074758csde110079.900ENSACAG00000003120CSDE110079.900Anolis_carolinensis
ENSDARG00000074758csde19884.252ENSANAG00000024665CSDE19974.220Aotus_nancymaae
ENSDARG00000074758csde19954.667ENSANAG00000028396-9161.905Aotus_nancymaae
ENSDARG00000074758csde110085.607ENSACLG00000013296csde110085.607Astatotilapia_calliptera
ENSDARG00000074758csde19986.702ENSAMXG00000007436csde110085.232Astyanax_mexicanus
ENSDARG00000074758csde110077.528ENSBTAG00000000678CSDE110074.969Bos_taurus
ENSDARG00000074758csde110077.857ENSCJAG00000012565CSDE19974.335Callithrix_jacchus
ENSDARG00000074758csde110075.132ENSCAFG00000009618CSDE19971.596Canis_familiaris
ENSDARG00000074758csde110075.344ENSCAFG00020000481CSDE110075.344Canis_lupus_dingo
ENSDARG00000074758csde110077.653ENSCHIG00000017250CSDE110075.094Capra_hircus
ENSDARG00000074758csde110078.214ENSTSYG00000003747CSDE110077.778Carlito_syrichta
ENSDARG00000074758csde110079.755ENSCAPG00000015128CSDE110079.755Cavia_aperea
ENSDARG00000074758csde110074.868ENSCPOG00000040388CSDE110074.093Cavia_porcellus
ENSDARG00000074758csde19984.343ENSCCAG00000036794CSDE110077.778Cebus_capucinus
ENSDARG00000074758csde19956.332ENSCCAG00000030878-9156.667Cebus_capucinus
ENSDARG00000074758csde19855.505ENSCCAG00000033677-9957.820Cebus_capucinus
ENSDARG00000074758csde110077.903ENSCATG00000036962CSDE19974.451Cercocebus_atys
ENSDARG00000074758csde110077.778ENSCLAG00000006618CSDE110077.778Chinchilla_lanigera
ENSDARG00000074758csde110077.903ENSCSAG00000001658CSDE19974.451Chlorocebus_sabaeus
ENSDARG00000074758csde110089.362ENSCHOG00000000918CSDE18585.437Choloepus_hoffmanni
ENSDARG00000074758csde110079.650ENSCPBG00000016547CSDE110079.650Chrysemys_picta_bellii
ENSDARG00000074758csde19647.445ENSCING00000014465-9643.049Ciona_intestinalis
ENSDARG00000074758csde19548.339ENSCSAVG00000008100-9941.677Ciona_savignyi
ENSDARG00000074758csde110077.903ENSCANG00000035096CSDE19974.335Colobus_angolensis_palliatus
ENSDARG00000074758csde19981.726ENSCANG00000031069-9282.677Colobus_angolensis_palliatus
ENSDARG00000074758csde110061.202ENSCGRG00001014011-10061.202Cricetulus_griseus_chok1gshd
ENSDARG00000074758csde110077.278ENSCGRG00001016833-10077.278Cricetulus_griseus_chok1gshd
ENSDARG00000074758csde110091.525ENSCGRG00000005831-9391.525Cricetulus_griseus_crigri
ENSDARG00000074758csde19774.222ENSCGRG00000002225-10074.222Cricetulus_griseus_crigri
ENSDARG00000074758csde110087.770ENSCSEG00000002620csde110082.854Cynoglossus_semilaevis
ENSDARG00000074758csde110085.482ENSCVAG00000001344csde110085.056Cyprinodon_variegatus
ENSDARG00000074758csde110075.500ENSDNOG00000010287-9375.500Dasypus_novemcinctus
ENSDARG00000074758csde19883.465ENSDORG00000011609Csde110077.154Dipodomys_ordii
ENSDARG00000074758csde110055.319FBgn0263352Unr8446.955Drosophila_melanogaster
ENSDARG00000074758csde110090.625ENSETEG00000002491-7980.488Echinops_telfairi
ENSDARG00000074758csde19953.989ENSETEG00000007109-9954.112Echinops_telfairi
ENSDARG00000074758csde19959.524ENSETEG00000013678-9958.573Echinops_telfairi
ENSDARG00000074758csde110066.931ENSETEG00000006280-10066.717Echinops_telfairi
ENSDARG00000074758csde19957.020ENSEBUG00000008647csde19955.251Eptatretus_burgeri
ENSDARG00000074758csde110078.277ENSEASG00005006284CSDE110078.277Equus_asinus_asinus
ENSDARG00000074758csde110078.277ENSECAG00000020885CSDE110078.277Equus_caballus
ENSDARG00000074758csde19982.000ENSEEUG00000006286CSDE17375.916Erinaceus_europaeus
ENSDARG00000074758csde110089.928ENSELUG00000015507csde19687.395Esox_lucius
ENSDARG00000074758csde110077.903ENSFCAG00000029266CSDE110075.344Felis_catus
ENSDARG00000074758csde110079.401ENSFALG00000003407CSDE110079.401Ficedula_albicollis
ENSDARG00000074758csde19884.252ENSFDAG00000007882CSDE110077.278Fukomys_damarensis
ENSDARG00000074758csde110085.357ENSFHEG00000010799csde110085.357Fundulus_heteroclitus
ENSDARG00000074758csde19986.341ENSGMOG00000012731csde110086.341Gadus_morhua
ENSDARG00000074758csde110078.571ENSGALG00000002139CSDE19978.967Gallus_gallus
ENSDARG00000074758csde110083.333ENSGAFG00000005241csde19581.168Gambusia_affinis
ENSDARG00000074758csde19986.717ENSGACG00000004544csde110086.717Gasterosteus_aculeatus
ENSDARG00000074758csde110079.526ENSGAGG00000017685CSDE110079.526Gopherus_agassizii
ENSDARG00000074758csde19984.343ENSGGOG00000002164CSDE110075.344Gorilla_gorilla
ENSDARG00000074758csde110089.568ENSHBUG00000020315csde110084.541Haplochromis_burtoni
ENSDARG00000074758csde19965.066ENSHGLG00000010039-10066.444Heterocephalus_glaber_female
ENSDARG00000074758csde19970.588ENSHGLG00000003829-10067.835Heterocephalus_glaber_female
ENSDARG00000074758csde19881.746ENSHGLG00000008555-9481.746Heterocephalus_glaber_female
ENSDARG00000074758csde110074.286ENSHGLG00000000650-9963.079Heterocephalus_glaber_female
ENSDARG00000074758csde110077.143ENSHGLG00000009620-10070.537Heterocephalus_glaber_female
ENSDARG00000074758csde110071.223ENSHGLG00000019549-10065.707Heterocephalus_glaber_female
ENSDARG00000074758csde19868.195ENSHGLG00000007471-9866.920Heterocephalus_glaber_female
ENSDARG00000074758csde19183.146ENSHGLG00100001846-10062.030Heterocephalus_glaber_male
ENSDARG00000074758csde19863.274ENSHGLG00100004833-10061.778Heterocephalus_glaber_male
ENSDARG00000074758csde110063.228ENSHGLG00100004195-10063.551Heterocephalus_glaber_male
ENSDARG00000074758csde19868.258ENSHGLG00100007287-9866.413Heterocephalus_glaber_male
ENSDARG00000074758csde110077.528ENSHGLG00100019438-10077.528Heterocephalus_glaber_male
ENSDARG00000074758csde19964.629ENSHGLG00100006910-10066.222Heterocephalus_glaber_male
ENSDARG00000074758csde110063.329ENSHGLG00100012072-10063.329Heterocephalus_glaber_male
ENSDARG00000074758csde19974.194ENSHGLG00100002245-9274.194Heterocephalus_glaber_male
ENSDARG00000074758csde110085.232ENSHCOG00000004158csde110082.103Hippocampus_comes
ENSDARG00000074758csde110085.714ENSIPUG00000000355csde110083.104Ictalurus_punctatus
ENSDARG00000074758csde110063.782ENSSTOG00000030994-10063.782Ictidomys_tridecemlineatus
ENSDARG00000074758csde19974.101ENSSTOG00000032722-9866.602Ictidomys_tridecemlineatus
ENSDARG00000074758csde19884.252ENSJJAG00000019571Csde110077.403Jaculus_jaculus
ENSDARG00000074758csde110085.181ENSKMAG00000005685csde110084.758Kryptolebias_marmoratus
ENSDARG00000074758csde110088.849ENSLBEG00000014770csde110082.979Labrus_bergylta
ENSDARG00000074758csde110080.423ENSLACG00000018452CSDE19972.050Latimeria_chalumnae
ENSDARG00000074758csde110087.469ENSLOCG00000010413csde19983.796Lepisosteus_oculatus
ENSDARG00000074758csde110075.094ENSLAFG00000007150CSDE19675.094Loxodonta_africana
ENSDARG00000074758csde110077.903ENSMFAG00000003674CSDE110075.344Macaca_fascicularis
ENSDARG00000074758csde110077.903ENSMMUG00000001974CSDE110075.344Macaca_mulatta
ENSDARG00000074758csde110077.903ENSMNEG00000045247CSDE19974.451Macaca_nemestrina
ENSDARG00000074758csde110077.857ENSMLEG00000038673CSDE19974.220Mandrillus_leucophaeus
ENSDARG00000074758csde110089.928ENSMAMG00000008821csde110084.606Mastacembelus_armatus
ENSDARG00000074758csde110085.607ENSMZEG00005021675csde110082.353Maylandia_zebra
ENSDARG00000074758csde110078.929ENSMGAG00000016381CSDE19979.219Meleagris_gallopavo
ENSDARG00000074758csde19884.252ENSMAUG00000014031Csde110077.278Mesocricetus_auratus
ENSDARG00000074758csde110077.857ENSMICG00000002050CSDE19975.278Microcebus_murinus
ENSDARG00000074758csde110077.278ENSMOCG00000018960Csde110077.278Microtus_ochrogaster
ENSDARG00000074758csde110084.656ENSMMOG00000015075csde110084.230Mola_mola
ENSDARG00000074758csde110079.026ENSMODG00000004685CSDE110079.026Monodelphis_domestica
ENSDARG00000074758csde110085.185ENSMALG00000007132csde110084.355Monopterus_albus
ENSDARG00000074758csde18991.026MGP_CAROLIEiJ_G0025444Csde19491.026Mus_caroli
ENSDARG00000074758csde19884.252ENSMUSG00000068823Csde19491.026Mus_musculus
ENSDARG00000074758csde18991.026MGP_PahariEiJ_G0026888Csde19491.026Mus_pahari
ENSDARG00000074758csde18991.026MGP_SPRETEiJ_G0026394Csde19491.026Mus_spretus
ENSDARG00000074758csde110077.500ENSMPUG00000005753CSDE19978.089Mustela_putorius_furo
ENSDARG00000074758csde110075.219ENSMLUG00000005681CSDE19971.972Myotis_lucifugus
ENSDARG00000074758csde19752.667ENSNGAG00000012599-10052.667Nannospalax_galili
ENSDARG00000074758csde19884.252ENSNGAG00000021929Csde110077.154Nannospalax_galili
ENSDARG00000074758csde110082.804ENSNBRG00000020808csde110082.353Neolamprologus_brichardi
ENSDARG00000074758csde19983.838ENSNLEG00000004842CSDE19974.335Nomascus_leucogenys
ENSDARG00000074758csde110090.426ENSMEUG00000002677CSDE19587.379Notamacropus_eugenii
ENSDARG00000074758csde19886.408ENSOPRG00000005002CSDE17686.408Ochotona_princeps
ENSDARG00000074758csde19859.914ENSODEG00000005979-9852.759Octodon_degus
ENSDARG00000074758csde19884.252ENSODEG00000007383-10077.278Octodon_degus
ENSDARG00000074758csde110089.568ENSONIG00000009309csde110085.452Oreochromis_niloticus
ENSDARG00000074758csde110079.286ENSOANG00000003346-8279.258Ornithorhynchus_anatinus
ENSDARG00000074758csde110078.027ENSOCUG00000016438CSDE19578.027Oryctolagus_cuniculus
ENSDARG00000074758csde110088.129ENSORLG00000000707csde110085.452Oryzias_latipes
ENSDARG00000074758csde110088.129ENSORLG00020005148csde110085.452Oryzias_latipes_hni
ENSDARG00000074758csde110088.129ENSORLG00015019415csde110085.330Oryzias_latipes_hsok
ENSDARG00000074758csde110086.691ENSOMEG00000015656csde110084.597Oryzias_melastigma
ENSDARG00000074758csde110075.344ENSOGAG00000012127CSDE19971.544Otolemur_garnettii
ENSDARG00000074758csde110075.132ENSOARG00000020034CSDE19971.198Ovis_aries
ENSDARG00000074758csde19984.343ENSPPAG00000025861CSDE110075.344Pan_paniscus
ENSDARG00000074758csde110077.903ENSPPRG00000006747CSDE19973.908Panthera_pardus
ENSDARG00000074758csde110077.903ENSPTIG00000015468CSDE110077.903Panthera_tigris_altaica
ENSDARG00000074758csde19984.343ENSPTRG00000033721CSDE110077.903Pan_troglodytes
ENSDARG00000074758csde110077.903ENSPANG00000018873CSDE110075.344Papio_anubis
ENSDARG00000074758csde110083.820ENSPKIG00000009459csde110083.459Paramormyrops_kingsleyae
ENSDARG00000074758csde110079.286ENSPSIG00000003823CSDE19681.978Pelodiscus_sinensis
ENSDARG00000074758csde110082.850ENSPMGG00000000772csde110081.750Periophthalmus_magnuspinnatus
ENSDARG00000074758csde19884.252ENSPEMG00000020357-10077.528Peromyscus_maniculatus_bairdii
ENSDARG00000074758csde110079.026ENSPCIG00000022587CSDE110079.026Phascolarctos_cinereus
ENSDARG00000074758csde19793.000ENSPFOG00000012664csde110085.404Poecilia_formosa
ENSDARG00000074758csde19588.350ENSPLAG00000017680csde18788.350Poecilia_latipinna
ENSDARG00000074758csde19588.350ENSPMEG00000005094csde18988.350Poecilia_mexicana
ENSDARG00000074758csde110088.129ENSPREG00000011631csde110084.356Poecilia_reticulata
ENSDARG00000074758csde110077.903ENSPPYG00000000996CSDE110077.903Pongo_abelii
ENSDARG00000074758csde110089.362ENSPCAG00000014368CSDE19086.408Procavia_capensis
ENSDARG00000074758csde110077.903ENSPCOG00000017893CSDE110077.903Propithecus_coquereli
ENSDARG00000074758csde19972.821ENSPCOG00000008223-9072.821Propithecus_coquereli
ENSDARG00000074758csde110074.339ENSPVAG00000008225CSDE110067.356Pteropus_vampyrus
ENSDARG00000074758csde110089.568ENSPNYG00000013745csde110084.541Pundamilia_nyererei
ENSDARG00000074758csde110088.861ENSPNAG00000001958csde110085.357Pygocentrus_nattereri
ENSDARG00000074758csde110077.278ENSRNOG00000061058Csde110077.278Rattus_norvegicus
ENSDARG00000074758csde19882.540ENSRBIG00000038088-9182.540Rhinopithecus_bieti
ENSDARG00000074758csde110077.857ENSRBIG00000038966-9969.942Rhinopithecus_bieti
ENSDARG00000074758csde110077.903ENSRROG00000043101CSDE19974.451Rhinopithecus_roxellana
ENSDARG00000074758csde110077.857ENSSBOG00000035592CSDE19974.335Saimiri_boliviensis_boliviensis
ENSDARG00000074758csde110076.720ENSSHAG00000009831CSDE110076.345Sarcophilus_harrisii
ENSDARG00000074758csde19986.594ENSSFOG00015007498csde110085.536Scleropages_formosus
ENSDARG00000074758csde110088.489ENSSMAG00000007203csde110086.675Scophthalmus_maximus
ENSDARG00000074758csde110089.568ENSSDUG00000015380csde110084.606Seriola_dumerili
ENSDARG00000074758csde110087.860ENSSLDG00000008819csde110087.860Seriola_lalandi_dorsalis
ENSDARG00000074758csde110074.969ENSSARG00000000738CSDE19971.001Sorex_araneus
ENSDARG00000074758csde110080.275ENSSPUG00000008714CSDE110080.275Sphenodon_punctatus
ENSDARG00000074758csde110087.985ENSSPAG00000000716csde110084.731Stegastes_partitus
ENSDARG00000074758csde110078.214ENSSSCG00000006752CSDE110075.594Sus_scrofa
ENSDARG00000074758csde110078.705ENSTGUG00000000972CSDE110078.705Taeniopygia_guttata
ENSDARG00000074758csde110082.228ENSTRUG00000007996csde110080.451Takifugu_rubripes
ENSDARG00000074758csde19995.082ENSTNIG00000010878csde110088.123Tetraodon_nigroviridis
ENSDARG00000074758csde19377.500ENSTBEG00000011880-6177.500Tupaia_belangeri
ENSDARG00000074758csde110074.844ENSTTRG00000015583CSDE19970.968Tursiops_truncatus
ENSDARG00000074758csde19883.465ENSUAMG00000021779-9782.237Ursus_americanus
ENSDARG00000074758csde110071.164ENSUAMG00000024289-9969.832Ursus_americanus
ENSDARG00000074758csde19773.460ENSUMAG00000011714-9973.460Ursus_maritimus
ENSDARG00000074758csde110071.429ENSUMAG00000009720-9768.836Ursus_maritimus
ENSDARG00000074758csde110076.995ENSVPAG00000000749CSDE18176.995Vicugna_pacos
ENSDARG00000074758csde110077.500ENSVVUG00000009890CSDE19477.001Vulpes_vulpes
ENSDARG00000074758csde110081.646ENSXETG00000021448csde110078.109Xenopus_tropicalis
ENSDARG00000074758csde19985.284ENSXCOG00000000035csde19974.460Xiphophorus_couchianus
ENSDARG00000074758csde110088.129ENSXMAG00000009080csde110085.280Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction

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