EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000075297 (Gene tree)
Gene ID: 415249
Gene Symbol: trnt1
Alias: zgc:86645
Full Name: tRNA nucleotidyl transferase%2C CCA-adding%2C 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 11177 bases
Position: chr6:43222524-43233700
Accession: ZDB-GENE-040625-176
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000097969	PolyA_pol	PF01743.20	5.4e-34	1	1
ENSDARP00000157125	PolyA_pol	PF01743.20	5.4e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000113706	-	1921	-	ENSDARP00000097969	431 (aa)	-	F6NXI9
ENSDART00000188945	-	5094	XM_005166030	ENSDARP00000157125	431 (aa)	XP_005166087	F6NXI9

Gene Model

Click here to download ENSDARG00000075297's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000075297's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000075297	trnt1	95	70.343	ENSG00000072756	TRNT1	94	70.343	Homo_sapiens
ENSDARG00000075297	trnt1	99	75.058	ENSAPOG00000013687	trnt1	99	75.058	Acanthochromis_polyacanthus
ENSDARG00000075297	trnt1	99	67.361	ENSAMEG00000014520	TRNT1	99	67.361	Ailuropoda_melanoleuca
ENSDARG00000075297	trnt1	99	79.577	ENSACIG00000021706	trnt1	99	79.577	Amphilophus_citrinellus
ENSDARG00000075297	trnt1	99	78.169	ENSAOCG00000024612	trnt1	99	78.169	Amphiprion_ocellaris
ENSDARG00000075297	trnt1	99	69.789	ENSAPEG00000022627	trnt1	99	69.789	Amphiprion_percula
ENSDARG00000075297	trnt1	93	81.592	ENSATEG00000008928	trnt1	99	81.592	Anabas_testudineus
ENSDARG00000075297	trnt1	94	68.564	ENSAPLG00000004258	TRNT1	100	68.564	Anas_platyrhynchos
ENSDARG00000075297	trnt1	99	64.583	ENSACAG00000005657	TRNT1	98	64.583	Anolis_carolinensis
ENSDARG00000075297	trnt1	95	69.853	ENSANAG00000024802	TRNT1	94	69.853	Aotus_nancymaae
ENSDARG00000075297	trnt1	99	79.108	ENSACLG00000022227	trnt1	99	79.108	Astatotilapia_calliptera
ENSDARG00000075297	trnt1	100	83.295	ENSAMXG00000003960	trnt1	100	83.295	Astyanax_mexicanus
ENSDARG00000075297	trnt1	97	67.062	ENSBTAG00000019534	TRNT1	97	67.062	Bos_taurus
ENSDARG00000075297	trnt1	94	43.961	WBGene00010089	hpo-31	94	43.961	Caenorhabditis_elegans
ENSDARG00000075297	trnt1	95	70.098	ENSCJAG00000015466	TRNT1	94	70.098	Callithrix_jacchus
ENSDARG00000075297	trnt1	99	67.907	ENSCAFG00000005985	TRNT1	98	67.907	Canis_familiaris
ENSDARG00000075297	trnt1	99	67.907	ENSCAFG00020014746	TRNT1	98	67.907	Canis_lupus_dingo
ENSDARG00000075297	trnt1	97	68.246	ENSCHIG00000007030	TRNT1	97	68.246	Capra_hircus
ENSDARG00000075297	trnt1	99	67.749	ENSTSYG00000013390	TRNT1	99	67.749	Carlito_syrichta
ENSDARG00000075297	trnt1	87	56.915	ENSCAPG00000006891	TRNT1	99	56.915	Cavia_aperea
ENSDARG00000075297	trnt1	96	67.780	ENSCPOG00000007849	TRNT1	97	67.780	Cavia_porcellus
ENSDARG00000075297	trnt1	92	70.101	ENSCCAG00000002919	TRNT1	97	70.801	Cebus_capucinus
ENSDARG00000075297	trnt1	94	71.007	ENSCATG00000031985	TRNT1	93	71.007	Cercocebus_atys
ENSDARG00000075297	trnt1	99	67.832	ENSCLAG00000005186	TRNT1	92	74.874	Chinchilla_lanigera
ENSDARG00000075297	trnt1	95	70.833	ENSCSAG00000011052	TRNT1	94	70.833	Chlorocebus_sabaeus
ENSDARG00000075297	trnt1	81	74.737	ENSCHOG00000005712	TRNT1	82	74.737	Choloepus_hoffmanni
ENSDARG00000075297	trnt1	99	67.277	ENSCPBG00000017636	TRNT1	99	67.277	Chrysemys_picta_bellii
ENSDARG00000075297	trnt1	94	42.015	ENSCING00000007069	-	100	42.015	Ciona_intestinalis
ENSDARG00000075297	trnt1	94	42.998	ENSCSAVG00000007494	-	95	42.998	Ciona_savignyi
ENSDARG00000075297	trnt1	95	70.588	ENSCANG00000039030	TRNT1	94	70.588	Colobus_angolensis_palliatus
ENSDARG00000075297	trnt1	96	68.333	ENSCGRG00001009998	Trnt1	97	68.333	Cricetulus_griseus_chok1gshd
ENSDARG00000075297	trnt1	96	68.333	ENSCGRG00000013410	Trnt1	91	77.083	Cricetulus_griseus_crigri
ENSDARG00000075297	trnt1	99	76.995	ENSCSEG00000008157	trnt1	99	76.995	Cynoglossus_semilaevis
ENSDARG00000075297	trnt1	94	80.494	ENSCVAG00000019770	trnt1	95	80.494	Cyprinodon_variegatus
ENSDARG00000075297	trnt1	99	69.302	ENSDNOG00000008837	TRNT1	98	69.302	Dasypus_novemcinctus
ENSDARG00000075297	trnt1	95	70.244	ENSDORG00000014035	Trnt1	94	70.244	Dipodomys_ordii
ENSDARG00000075297	trnt1	92	48.130	FBgn0037369	CG2100	83	48.130	Drosophila_melanogaster
ENSDARG00000075297	trnt1	57	73.684	ENSETEG00000018177	TRNT1	99	73.684	Echinops_telfairi
ENSDARG00000075297	trnt1	94	63.951	ENSEBUG00000012779	-	95	63.951	Eptatretus_burgeri
ENSDARG00000075297	trnt1	95	69.853	ENSEASG00005003577	TRNT1	94	69.853	Equus_asinus_asinus
ENSDARG00000075297	trnt1	95	70.098	ENSECAG00000014420	TRNT1	94	70.098	Equus_caballus
ENSDARG00000075297	trnt1	95	70.488	ENSEEUG00000009567	TRNT1	94	70.488	Erinaceus_europaeus
ENSDARG00000075297	trnt1	100	79.118	ENSELUG00000003802	trnt1	100	79.118	Esox_lucius
ENSDARG00000075297	trnt1	97	68.483	ENSFCAG00000026805	TRNT1	97	68.483	Felis_catus
ENSDARG00000075297	trnt1	89	70.833	ENSFALG00000013539	TRNT1	99	70.833	Ficedula_albicollis
ENSDARG00000075297	trnt1	99	67.599	ENSFDAG00000018412	TRNT1	98	67.599	Fukomys_damarensis
ENSDARG00000075297	trnt1	99	77.700	ENSFHEG00000019294	trnt1	99	77.700	Fundulus_heteroclitus
ENSDARG00000075297	trnt1	98	76.485	ENSGMOG00000007460	trnt1	99	76.485	Gadus_morhua
ENSDARG00000075297	trnt1	99	66.125	ENSGALG00000017368	TRNT1	99	66.125	Gallus_gallus
ENSDARG00000075297	trnt1	99	78.169	ENSGAFG00000008647	trnt1	99	78.169	Gambusia_affinis
ENSDARG00000075297	trnt1	99	76.636	ENSGACG00000011903	trnt1	99	76.636	Gasterosteus_aculeatus
ENSDARG00000075297	trnt1	99	67.426	ENSGAGG00000020942	TRNT1	99	67.426	Gopherus_agassizii
ENSDARG00000075297	trnt1	95	70.588	ENSGGOG00000015286	TRNT1	94	70.588	Gorilla_gorilla
ENSDARG00000075297	trnt1	99	79.343	ENSHBUG00000002797	trnt1	99	79.343	Haplochromis_burtoni
ENSDARG00000075297	trnt1	97	64.235	ENSHGLG00000000221	-	97	64.235	Heterocephalus_glaber_female
ENSDARG00000075297	trnt1	97	68.646	ENSHGLG00000003649	TRNT1	97	68.646	Heterocephalus_glaber_female
ENSDARG00000075297	trnt1	97	67.696	ENSHGLG00100016421	TRNT1	97	67.696	Heterocephalus_glaber_male
ENSDARG00000075297	trnt1	99	72.770	ENSHCOG00000010618	trnt1	99	72.770	Hippocampus_comes
ENSDARG00000075297	trnt1	100	82.367	ENSIPUG00000000971	trnt1	100	82.367	Ictalurus_punctatus
ENSDARG00000075297	trnt1	99	66.279	ENSSTOG00000000150	TRNT1	96	73.869	Ictidomys_tridecemlineatus
ENSDARG00000075297	trnt1	100	67.517	ENSJJAG00000018561	Trnt1	98	67.517	Jaculus_jaculus
ENSDARG00000075297	trnt1	99	77.103	ENSKMAG00000011307	trnt1	99	77.103	Kryptolebias_marmoratus
ENSDARG00000075297	trnt1	99	70.023	ENSLBEG00000019457	trnt1	100	70.023	Labrus_bergylta
ENSDARG00000075297	trnt1	97	72.596	ENSLACG00000013227	TRNT1	96	72.596	Latimeria_chalumnae
ENSDARG00000075297	trnt1	99	74.884	ENSLOCG00000011105	trnt1	98	74.884	Lepisosteus_oculatus
ENSDARG00000075297	trnt1	99	67.981	ENSLAFG00000023191	TRNT1	99	67.981	Loxodonta_africana
ENSDARG00000075297	trnt1	94	71.007	ENSMFAG00000045113	TRNT1	93	71.007	Macaca_fascicularis
ENSDARG00000075297	trnt1	94	71.007	ENSMMUG00000017983	TRNT1	93	71.007	Macaca_mulatta
ENSDARG00000075297	trnt1	94	71.007	ENSMNEG00000037805	TRNT1	93	71.007	Macaca_nemestrina
ENSDARG00000075297	trnt1	88	72.178	ENSMLEG00000033671	TRNT1	99	72.178	Mandrillus_leucophaeus
ENSDARG00000075297	trnt1	99	77.934	ENSMAMG00000023401	trnt1	99	77.934	Mastacembelus_armatus
ENSDARG00000075297	trnt1	99	79.108	ENSMZEG00005009141	trnt1	99	79.108	Maylandia_zebra
ENSDARG00000075297	trnt1	74	66.562	ENSMGAG00000009971	TRNT1	99	66.562	Meleagris_gallopavo
ENSDARG00000075297	trnt1	99	67.442	ENSMAUG00000020707	Trnt1	99	67.442	Mesocricetus_auratus
ENSDARG00000075297	trnt1	95	70.000	ENSMICG00000016615	TRNT1	94	70.000	Microcebus_murinus
ENSDARG00000075297	trnt1	97	68.720	ENSMOCG00000004539	Trnt1	97	68.720	Microtus_ochrogaster
ENSDARG00000075297	trnt1	99	75.587	ENSMMOG00000010742	trnt1	99	75.587	Mola_mola
ENSDARG00000075297	trnt1	97	68.483	ENSMODG00000004368	TRNT1	97	68.483	Monodelphis_domestica
ENSDARG00000075297	trnt1	99	75.234	ENSMALG00000008376	trnt1	99	75.234	Monopterus_albus
ENSDARG00000075297	trnt1	99	67.907	MGP_CAROLIEiJ_G0028698	Trnt1	96	72.727	Mus_caroli
ENSDARG00000075297	trnt1	99	67.442	ENSMUSG00000013736	Trnt1	91	74.874	Mus_musculus
ENSDARG00000075297	trnt1	99	68.677	MGP_PahariEiJ_G0022449	Trnt1	99	76.000	Mus_pahari
ENSDARG00000075297	trnt1	99	67.674	MGP_SPRETEiJ_G0029726	Trnt1	91	74.874	Mus_spretus
ENSDARG00000075297	trnt1	97	67.773	ENSMPUG00000017017	TRNT1	97	67.773	Mustela_putorius_furo
ENSDARG00000075297	trnt1	90	71.762	ENSMLUG00000011864	TRNT1	100	71.762	Myotis_lucifugus
ENSDARG00000075297	trnt1	95	69.756	ENSNGAG00000000537	Trnt1	94	69.756	Nannospalax_galili
ENSDARG00000075297	trnt1	81	78.797	ENSNBRG00000023606	trnt1	99	78.797	Neolamprologus_brichardi
ENSDARG00000075297	trnt1	95	70.833	ENSNLEG00000003226	TRNT1	94	70.833	Nomascus_leucogenys
ENSDARG00000075297	trnt1	96	68.735	ENSMEUG00000004684	TRNT1	97	68.735	Notamacropus_eugenii
ENSDARG00000075297	trnt1	89	67.885	ENSOPRG00000015067	TRNT1	99	67.885	Ochotona_princeps
ENSDARG00000075297	trnt1	96	69.378	ENSODEG00000007597	TRNT1	96	69.378	Octodon_degus
ENSDARG00000075297	trnt1	99	79.673	ENSONIG00000020273	trnt1	98	79.673	Oreochromis_niloticus
ENSDARG00000075297	trnt1	99	64.720	ENSOANG00000007514	TRNT1	98	64.720	Ornithorhynchus_anatinus
ENSDARG00000075297	trnt1	99	67.765	ENSOCUG00000008580	TRNT1	99	67.765	Oryctolagus_cuniculus
ENSDARG00000075297	trnt1	99	74.178	ENSORLG00000003165	trnt1	99	74.178	Oryzias_latipes
ENSDARG00000075297	trnt1	99	74.648	ENSORLG00020022060	trnt1	99	74.648	Oryzias_latipes_hni
ENSDARG00000075297	trnt1	99	73.944	ENSORLG00015018915	trnt1	98	73.944	Oryzias_latipes_hsok
ENSDARG00000075297	trnt1	99	70.794	ENSOMEG00000003331	trnt1	99	70.794	Oryzias_melastigma
ENSDARG00000075297	trnt1	97	68.246	ENSOARG00000008631	TRNT1	97	68.246	Ovis_aries
ENSDARG00000075297	trnt1	95	70.343	ENSPPAG00000043566	TRNT1	94	70.343	Pan_paniscus
ENSDARG00000075297	trnt1	97	68.646	ENSPPRG00000001327	TRNT1	97	68.646	Panthera_pardus
ENSDARG00000075297	trnt1	97	68.720	ENSPTIG00000011448	TRNT1	97	68.720	Panthera_tigris_altaica
ENSDARG00000075297	trnt1	95	70.343	ENSPTRG00000014564	TRNT1	94	70.343	Pan_troglodytes
ENSDARG00000075297	trnt1	94	71.007	ENSPANG00000025944	TRNT1	93	71.007	Papio_anubis
ENSDARG00000075297	trnt1	100	76.566	ENSPKIG00000020015	trnt1	100	76.566	Paramormyrops_kingsleyae
ENSDARG00000075297	trnt1	92	69.270	ENSPSIG00000017356	TRNT1	99	70.950	Pelodiscus_sinensis
ENSDARG00000075297	trnt1	99	74.766	ENSPMGG00000008888	trnt1	98	74.766	Periophthalmus_magnuspinnatus
ENSDARG00000075297	trnt1	99	67.907	ENSPEMG00000019845	Trnt1	99	67.907	Peromyscus_maniculatus_bairdii
ENSDARG00000075297	trnt1	100	67.580	ENSPCIG00000030436	TRNT1	100	67.580	Phascolarctos_cinereus
ENSDARG00000075297	trnt1	98	78.622	ENSPFOG00000006194	trnt1	98	78.622	Poecilia_formosa
ENSDARG00000075297	trnt1	98	78.622	ENSPLAG00000015623	trnt1	99	80.750	Poecilia_latipinna
ENSDARG00000075297	trnt1	99	77.934	ENSPMEG00000012216	trnt1	99	80.500	Poecilia_mexicana
ENSDARG00000075297	trnt1	99	77.700	ENSPREG00000021470	trnt1	99	77.700	Poecilia_reticulata
ENSDARG00000075297	trnt1	95	70.000	ENSPPYG00000013702	TRNT1	94	70.000	Pongo_abelii
ENSDARG00000075297	trnt1	89	72.063	ENSPCAG00000001951	TRNT1	100	72.063	Procavia_capensis
ENSDARG00000075297	trnt1	99	67.517	ENSPCOG00000022228	TRNT1	99	67.517	Propithecus_coquereli
ENSDARG00000075297	trnt1	89	71.354	ENSPVAG00000008784	TRNT1	100	71.354	Pteropus_vampyrus
ENSDARG00000075297	trnt1	99	79.108	ENSPNYG00000003120	trnt1	99	79.108	Pundamilia_nyererei
ENSDARG00000075297	trnt1	100	82.367	ENSPNAG00000000565	trnt1	100	82.367	Pygocentrus_nattereri
ENSDARG00000075297	trnt1	99	67.749	ENSRNOG00000006432	Trnt1	99	67.749	Rattus_norvegicus
ENSDARG00000075297	trnt1	95	69.608	ENSRBIG00000042632	TRNT1	94	69.608	Rhinopithecus_bieti
ENSDARG00000075297	trnt1	95	70.343	ENSRROG00000036866	TRNT1	94	70.343	Rhinopithecus_roxellana
ENSDARG00000075297	trnt1	95	70.098	ENSSBOG00000021208	TRNT1	94	70.098	Saimiri_boliviensis_boliviensis
ENSDARG00000075297	trnt1	97	68.333	ENSSHAG00000018861	TRNT1	97	68.333	Sarcophilus_harrisii
ENSDARG00000075297	trnt1	99	77.049	ENSSFOG00015020844	trnt1	99	77.049	Scleropages_formosus
ENSDARG00000075297	trnt1	99	78.638	ENSSMAG00000015432	trnt1	97	78.638	Scophthalmus_maximus
ENSDARG00000075297	trnt1	99	79.812	ENSSDUG00000012320	trnt1	99	79.812	Seriola_dumerili
ENSDARG00000075297	trnt1	56	77.593	ENSSLDG00000016463	-	91	77.824	Seriola_lalandi_dorsalis
ENSDARG00000075297	trnt1	99	79.343	ENSSLDG00000009325	trnt1	99	79.343	Seriola_lalandi_dorsalis
ENSDARG00000075297	trnt1	89	72.324	ENSSPUG00000014153	TRNT1	99	72.324	Sphenodon_punctatus
ENSDARG00000075297	trnt1	99	76.869	ENSSPAG00000021005	trnt1	99	76.869	Stegastes_partitus
ENSDARG00000075297	trnt1	97	68.483	ENSSSCG00000011529	TRNT1	97	68.841	Sus_scrofa
ENSDARG00000075297	trnt1	94	69.630	ENSTGUG00000010192	TRNT1	99	69.630	Taeniopygia_guttata
ENSDARG00000075297	trnt1	99	77.465	ENSTRUG00000001088	trnt1	99	77.465	Takifugu_rubripes
ENSDARG00000075297	trnt1	99	76.995	ENSTNIG00000007363	trnt1	97	76.995	Tetraodon_nigroviridis
ENSDARG00000075297	trnt1	57	60.870	ENSTBEG00000006367	TRNT1	83	60.870	Tupaia_belangeri
ENSDARG00000075297	trnt1	99	66.744	ENSTTRG00000007803	TRNT1	96	66.744	Tursiops_truncatus
ENSDARG00000075297	trnt1	95	69.608	ENSUAMG00000022574	TRNT1	94	69.608	Ursus_americanus
ENSDARG00000075297	trnt1	95	69.853	ENSUMAG00000024092	TRNT1	94	69.853	Ursus_maritimus
ENSDARG00000075297	trnt1	99	67.907	ENSVVUG00000012810	TRNT1	98	67.907	Vulpes_vulpes
ENSDARG00000075297	trnt1	97	62.857	ENSXETG00000025091	trnt1	99	64.500	Xenopus_tropicalis
ENSDARG00000075297	trnt1	99	77.934	ENSXCOG00000010150	trnt1	99	77.934	Xiphophorus_couchianus
ENSDARG00000075297	trnt1	99	77.934	ENSXMAG00000002227	trnt1	99	77.934	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001654	eye development	26494905.	IMP	Process
GO:0001966	thigmotaxis	26494905.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0006396	RNA processing	-	IEA	Process
GO:0007632	visual behavior	26494905.	IMP	Process
GO:0008033	tRNA processing	26494905.	IMP	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016779	nucleotidyltransferase activity	-	IEA	Function