EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000075323 (Gene tree)
Gene ID: 406321
Gene Symbol: srfbp1
Alias: fc54c06|wu:fc54c06|zgc:56062
Full Name: serum response factor binding protein 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7598 bases
Position: chr19:29296191-29303788
Accession: ZDB-GENE-040426-1991
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000098626	BUD22	PF09073.10	6.5e-11	1	1
ENSDARP00000149437	BUD22	PF09073.10	6.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000188751	-	2346	-	ENSDARP00000149437	772 (aa)	-	Q6DI30
ENSDART00000112167	-	3640	-	ENSDARP00000098626	772 (aa)	-	Q6DI30

Gene Model

Click here to download ENSDARG00000075323's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000075323's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000075323	srfbp1	66	59.843	ENSAPOG00000021469	-	65	59.843	Acanthochromis_polyacanthus
ENSDARG00000075323	srfbp1	61	45.860	ENSAMEG00000018050	SRFBP1	75	45.860	Ailuropoda_melanoleuca
ENSDARG00000075323	srfbp1	52	73.810	ENSACIG00000019127	-	79	59.459	Amphilophus_citrinellus
ENSDARG00000075323	srfbp1	67	60.630	ENSAOCG00000002182	-	78	60.630	Amphiprion_ocellaris
ENSDARG00000075323	srfbp1	67	60.630	ENSAPEG00000003041	-	68	60.630	Amphiprion_percula
ENSDARG00000075323	srfbp1	67	43.429	ENSACAG00000003779	SRFBP1	78	43.429	Anolis_carolinensis
ENSDARG00000075323	srfbp1	71	62.992	ENSACLG00000013909	-	65	62.992	Astatotilapia_calliptera
ENSDARG00000075323	srfbp1	62	51.948	ENSBTAG00000014320	SRFBP1	75	51.948	Bos_taurus
ENSDARG00000075323	srfbp1	74	50.968	ENSCJAG00000017177	SRFBP1	75	50.968	Callithrix_jacchus
ENSDARG00000075323	srfbp1	62	53.247	ENSCAFG00000000512	SRFBP1	75	53.247	Canis_familiaris
ENSDARG00000075323	srfbp1	62	53.247	ENSCAFG00020009389	SRFBP1	75	53.247	Canis_lupus_dingo
ENSDARG00000075323	srfbp1	62	47.826	ENSTSYG00000008630	-	76	47.826	Carlito_syrichta
ENSDARG00000075323	srfbp1	68	51.370	ENSCPOG00000004695	SRFBP1	72	51.370	Cavia_porcellus
ENSDARG00000075323	srfbp1	67	50.323	ENSCCAG00000032237	-	75	50.323	Cebus_capucinus
ENSDARG00000075323	srfbp1	63	47.771	ENSCLAG00000003630	SRFBP1	76	47.771	Chinchilla_lanigera
ENSDARG00000075323	srfbp1	60	64.516	ENSCSEG00000011789	-	99	47.926	Cynoglossus_semilaevis
ENSDARG00000075323	srfbp1	61	59.574	ENSCVAG00000013010	-	73	59.574	Cyprinodon_variegatus
ENSDARG00000075323	srfbp1	63	53.595	ENSEASG00005012421	SRFBP1	74	53.595	Equus_asinus_asinus
ENSDARG00000075323	srfbp1	66	53.595	ENSECAG00000015330	SRFBP1	74	53.595	Equus_caballus
ENSDARG00000075323	srfbp1	66	42.038	ENSEEUG00000011514	SRFBP1	76	42.038	Erinaceus_europaeus
ENSDARG00000075323	srfbp1	62	51.634	ENSFCAG00000035118	SRFBP1	74	51.634	Felis_catus
ENSDARG00000075323	srfbp1	70	37.374	ENSFALG00000007595	SRFBP1	88	37.374	Ficedula_albicollis
ENSDARG00000075323	srfbp1	68	48.824	ENSFDAG00000005102	SRFBP1	77	49.682	Fukomys_damarensis
ENSDARG00000075323	srfbp1	64	61.194	ENSFHEG00000000477	-	61	61.654	Fundulus_heteroclitus
ENSDARG00000075323	srfbp1	60	61.818	ENSGMOG00000012729	-	71	61.017	Gadus_morhua
ENSDARG00000075323	srfbp1	66	47.651	ENSGALG00000005316	SRFBP1	70	51.145	Gallus_gallus
ENSDARG00000075323	srfbp1	59	57.812	ENSGACG00000009055	-	57	57.812	Gasterosteus_aculeatus
ENSDARG00000075323	srfbp1	60	52.679	ENSGAGG00000024915	SRFBP1	69	52.679	Gopherus_agassizii
ENSDARG00000075323	srfbp1	71	57.463	ENSHCOG00000020644	-	55	57.463	Hippocampus_comes
ENSDARG00000075323	srfbp1	69	55.970	ENSLBEG00000013924	-	75	55.970	Labrus_bergylta
ENSDARG00000075323	srfbp1	74	57.937	ENSLOCG00000008772	SRFBP1	89	57.937	Lepisosteus_oculatus
ENSDARG00000075323	srfbp1	68	52.318	ENSLAFG00000015303	SRFBP1	72	52.318	Loxodonta_africana
ENSDARG00000075323	srfbp1	63	63.934	ENSMAMG00000004632	-	61	62.698	Mastacembelus_armatus
ENSDARG00000075323	srfbp1	71	63.780	ENSMZEG00005000432	-	64	63.780	Maylandia_zebra
ENSDARG00000075323	srfbp1	64	50.000	ENSMAUG00000009431	Srfbp1	71	50.000	Mesocricetus_auratus
ENSDARG00000075323	srfbp1	62	50.649	ENSMICG00000042923	SRFBP1	74	50.649	Microcebus_murinus
ENSDARG00000075323	srfbp1	77	47.742	ENSMOCG00000006206	Srfbp1	70	51.429	Microtus_ochrogaster
ENSDARG00000075323	srfbp1	56	62.393	ENSMMOG00000021202	-	71	60.938	Mola_mola
ENSDARG00000075323	srfbp1	69	47.674	ENSMODG00000013487	-	74	47.674	Monodelphis_domestica
ENSDARG00000075323	srfbp1	64	62.205	ENSMALG00000001812	-	70	62.205	Monopterus_albus
ENSDARG00000075323	srfbp1	62	51.613	ENSMUSG00000024528	Srfbp1	73	51.613	Mus_musculus
ENSDARG00000075323	srfbp1	60	50.704	ENSMPUG00000013031	SRFBP1	75	50.704	Mustela_putorius_furo
ENSDARG00000075323	srfbp1	60	51.351	ENSMLUG00000009984	SRFBP1	73	51.351	Myotis_lucifugus
ENSDARG00000075323	srfbp1	62	47.531	ENSNGAG00000013229	Srfbp1	74	47.531	Nannospalax_galili
ENSDARG00000075323	srfbp1	64	62.308	ENSNBRG00000001146	-	69	62.308	Neolamprologus_brichardi
ENSDARG00000075323	srfbp1	69	51.948	ENSNLEG00000011949	SRFBP1	74	51.948	Nomascus_leucogenys
ENSDARG00000075323	srfbp1	61	47.170	ENSODEG00000007258	SRFBP1	78	47.170	Octodon_degus
ENSDARG00000075323	srfbp1	70	52.903	ENSORLG00000014234	-	74	52.903	Oryzias_latipes
ENSDARG00000075323	srfbp1	69	54.194	ENSORLG00020020129	-	71	54.194	Oryzias_latipes_hni
ENSDARG00000075323	srfbp1	66	52.903	ENSORLG00015000238	-	99	46.032	Oryzias_latipes_hsok
ENSDARG00000075323	srfbp1	82	52.597	ENSPPAG00000035848	SRFBP1	74	52.597	Pan_paniscus
ENSDARG00000075323	srfbp1	62	51.634	ENSPPRG00000001695	SRFBP1	74	51.634	Panthera_pardus
ENSDARG00000075323	srfbp1	62	51.634	ENSPTIG00000012305	SRFBP1	74	51.634	Panthera_tigris_altaica
ENSDARG00000075323	srfbp1	82	52.597	ENSPTRG00000017172	SRFBP1	74	52.597	Pan_troglodytes
ENSDARG00000075323	srfbp1	55	57.143	ENSPKIG00000024291	-	71	57.143	Paramormyrops_kingsleyae
ENSDARG00000075323	srfbp1	68	46.626	ENSPSIG00000010650	SRFBP1	76	46.626	Pelodiscus_sinensis
ENSDARG00000075323	srfbp1	71	55.172	ENSPCIG00000028532	SRFBP1	69	55.172	Phascolarctos_cinereus
ENSDARG00000075323	srfbp1	64	53.165	ENSPFOG00000005272	-	78	53.165	Poecilia_formosa
ENSDARG00000075323	srfbp1	69	53.797	ENSPLAG00000018282	-	78	53.797	Poecilia_latipinna
ENSDARG00000075323	srfbp1	69	53.165	ENSPMEG00000020184	-	69	53.165	Poecilia_mexicana
ENSDARG00000075323	srfbp1	65	58.915	ENSPREG00000017248	-	74	58.915	Poecilia_reticulata
ENSDARG00000075323	srfbp1	79	52.597	ENSPPYG00000015714	SRFBP1	74	52.597	Pongo_abelii
ENSDARG00000075323	srfbp1	69	63.780	ENSPNYG00000010355	-	72	63.780	Pundamilia_nyererei
ENSDARG00000075323	srfbp1	58	55.906	ENSRNOG00000014808	Srfbp1	69	54.286	Rattus_norvegicus
ENSDARG00000075323	srfbp1	62	50.323	ENSSBOG00000015464	-	75	50.323	Saimiri_boliviensis_boliviensis
ENSDARG00000075323	srfbp1	73	42.714	ENSSHAG00000016003	SRFBP1	84	42.714	Sarcophilus_harrisii
ENSDARG00000075323	srfbp1	65	57.143	ENSSFOG00015001274	srfbp1	70	57.143	Scleropages_formosus
ENSDARG00000075323	srfbp1	96	50.556	ENSSMAG00000020630	-	59	62.500	Scophthalmus_maximus
ENSDARG00000075323	srfbp1	70	60.938	ENSSDUG00000001828	-	72	60.938	Seriola_dumerili
ENSDARG00000075323	srfbp1	66	53.642	ENSSARG00000010669	SRFBP1	73	54.795	Sorex_araneus
ENSDARG00000075323	srfbp1	59	44.366	ENSSSCG00000022656	SRFBP1	73	44.366	Sus_scrofa
ENSDARG00000075323	srfbp1	61	60.656	ENSTNIG00000009267	-	70	60.656	Tetraodon_nigroviridis
ENSDARG00000075323	srfbp1	62	52.055	ENSVPAG00000005714	SRFBP1	73	52.055	Vicugna_pacos
ENSDARG00000075323	srfbp1	66	53.247	ENSVVUG00000019178	SRFBP1	75	53.247	Vulpes_vulpes
ENSDARG00000075323	srfbp1	67	51.200	ENSXETG00000004681	srfbp1	72	47.333	Xenopus_tropicalis
ENSDARG00000075323	srfbp1	75	53.797	ENSXCOG00000003410	-	78	53.797	Xiphophorus_couchianus
ENSDARG00000075323	srfbp1	75	53.797	ENSXMAG00000026251	-	78	53.797	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030686	90S preribosome	21873635.	IBA	Component