EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000075542 (Gene tree)
Gene ID: 556453
Gene Symbol: zfhx4
Alias: im:7159242|si:ch211-94d7.1
Full Name: zinc finger homeobox 4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 82083 bases
Position: chr24:23241444-23323526
Accession: ZDB-GENE-070530-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000101036	zf-C2H2	PF00096.26	1.2e-11	1	2
ENSDARP00000101036	zf-C2H2	PF00096.26	1.2e-11	2	2
ENSDARP00000122306	zf-C2H2	PF00096.26	1.6e-11	1	2
ENSDARP00000122306	zf-C2H2	PF00096.26	1.6e-11	2	2
ENSDARP00000143509	zf-C2H2	PF00096.26	1.6e-11	1	2
ENSDARP00000143509	zf-C2H2	PF00096.26	1.6e-11	2	2
ENSDARP00000101036	zf-met	PF12874.7	2.3e-08	1	1
ENSDARP00000122306	zf-met	PF12874.7	2.8e-08	1	1
ENSDARP00000143509	zf-met	PF12874.7	2.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000112256	-	14414	XM_005162749	ENSDARP00000101036	3489 (aa)	XP_005162806	E7FCF7
ENSDART00000135846	-	13851	XM_005162746	ENSDARP00000122306	3528 (aa)	XP_005162803	F6NXU9
ENSDART00000176903	-	14531	XM_679268	ENSDARP00000143509	3528 (aa)	XP_684360	F6NXU9

Gene Model

Click here to download ENSDARG00000075542's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000075542's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000075542	zfhx4	53	65.152	ENSDARG00000073944	si:ch73-386h18.1	82	46.754
ENSDARG00000075542	zfhx4	77	64.609	ENSDARG00000103057	zfhx3	95	50.892

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000075542	zfhx4	55	70.315	ENSG00000091656	ZFHX4	100	75.484	Homo_sapiens
ENSDARG00000075542	zfhx4	55	69.795	ENSAMEG00000016203	ZFHX4	50	72.045	Ailuropoda_melanoleuca
ENSDARG00000075542	zfhx4	98	77.097	ENSACIG00000002805	zfhx4	100	72.527	Amphilophus_citrinellus
ENSDARG00000075542	zfhx4	97	74.771	ENSAOCG00000010470	zfhx4	99	75.810	Amphiprion_ocellaris
ENSDARG00000075542	zfhx4	74	77.591	ENSAPEG00000024228	zfhx4	99	75.000	Amphiprion_percula
ENSDARG00000075542	zfhx4	97	73.803	ENSATEG00000015997	zfhx4	99	72.197	Anabas_testudineus
ENSDARG00000075542	zfhx4	100	69.851	ENSAPLG00000012910	ZFHX4	100	69.812	Anas_platyrhynchos
ENSDARG00000075542	zfhx4	98	70.215	ENSANAG00000034150	ZFHX4	79	75.542	Aotus_nancymaae
ENSDARG00000075542	zfhx4	98	71.810	ENSACLG00000020930	zfhx4	100	70.991	Astatotilapia_calliptera
ENSDARG00000075542	zfhx4	100	85.960	ENSAMXG00000013609	zfhx4	100	86.355	Astyanax_mexicanus
ENSDARG00000075542	zfhx4	98	70.599	ENSBTAG00000033268	ZFHX4	100	70.162	Bos_taurus
ENSDARG00000075542	zfhx4	55	69.880	ENSCJAG00000000517	ZFHX4	100	70.280	Callithrix_jacchus
ENSDARG00000075542	zfhx4	100	69.244	ENSCHIG00000017123	ZFHX4	100	69.565	Capra_hircus
ENSDARG00000075542	zfhx4	98	70.356	ENSTSYG00000010369	ZFHX4	100	69.438	Carlito_syrichta
ENSDARG00000075542	zfhx4	55	70.172	ENSCPOG00000012693	ZFHX4	64	69.854	Cavia_porcellus
ENSDARG00000075542	zfhx4	55	70.230	ENSCCAG00000026493	ZFHX4	100	70.483	Cebus_capucinus
ENSDARG00000075542	zfhx4	55	70.435	ENSCATG00000033950	ZFHX4	100	70.349	Cercocebus_atys
ENSDARG00000075542	zfhx4	55	70.550	ENSCANG00000034083	ZFHX4	100	66.411	Colobus_angolensis_palliatus
ENSDARG00000075542	zfhx4	55	70.280	ENSCGRG00001011235	Zfhx4	55	70.553	Cricetulus_griseus_chok1gshd
ENSDARG00000075542	zfhx4	98	71.799	ENSCSEG00000008391	zfhx4	100	71.622	Cynoglossus_semilaevis
ENSDARG00000075542	zfhx4	98	76.789	ENSCVAG00000003822	zfhx4	100	70.580	Cyprinodon_variegatus
ENSDARG00000075542	zfhx4	92	67.764	ENSDNOG00000038560	ZFHX4	96	72.498	Dasypus_novemcinctus
ENSDARG00000075542	zfhx4	85	85.000	ENSETEG00000004672	ZFHX4	85	85.000	Echinops_telfairi
ENSDARG00000075542	zfhx4	98	70.229	ENSEASG00005020537	ZFHX4	98	68.368	Equus_asinus_asinus
ENSDARG00000075542	zfhx4	98	70.241	ENSECAG00000022611	ZFHX4	98	72.102	Equus_caballus
ENSDARG00000075542	zfhx4	87	73.147	ENSEEUG00000007585	ZFHX4	86	74.228	Erinaceus_europaeus
ENSDARG00000075542	zfhx4	100	70.677	ENSELUG00000009500	zfhx4	100	71.752	Esox_lucius
ENSDARG00000075542	zfhx4	77	73.026	ENSFCAG00000015688	ZFHX4	100	65.946	Felis_catus
ENSDARG00000075542	zfhx4	55	72.445	ENSFALG00000008584	ZFHX4	100	71.429	Ficedula_albicollis
ENSDARG00000075542	zfhx4	55	67.635	ENSFHEG00000003914	zfhx4	100	72.327	Fundulus_heteroclitus
ENSDARG00000075542	zfhx4	92	70.867	ENSGMOG00000001910	zfhx4	91	71.131	Gadus_morhua
ENSDARG00000075542	zfhx4	98	72.380	ENSGALG00000037164	ZFHX4	100	72.087	Gallus_gallus
ENSDARG00000075542	zfhx4	54	66.833	ENSGAFG00000009778	zfhx4	100	70.704	Gambusia_affinis
ENSDARG00000075542	zfhx4	98	70.380	ENSGACG00000002418	zfhx4	100	70.005	Gasterosteus_aculeatus
ENSDARG00000075542	zfhx4	93	72.315	ENSGAGG00000017044	ZFHX4	99	72.035	Gopherus_agassizii
ENSDARG00000075542	zfhx4	55	70.415	ENSGGOG00000024837	ZFHX4	100	70.585	Gorilla_gorilla
ENSDARG00000075542	zfhx4	98	72.279	ENSHBUG00000023412	zfhx4	100	71.174	Haplochromis_burtoni
ENSDARG00000075542	zfhx4	98	71.652	ENSHGLG00000007968	ZFHX4	100	69.805	Heterocephalus_glaber_female
ENSDARG00000075542	zfhx4	100	69.059	ENSHGLG00100003129	ZFHX4	100	69.324	Heterocephalus_glaber_male
ENSDARG00000075542	zfhx4	100	69.451	ENSHCOG00000012979	zfhx4	100	70.241	Hippocampus_comes
ENSDARG00000075542	zfhx4	97	85.095	ENSIPUG00000014739	zfhx4	99	85.007	Ictalurus_punctatus
ENSDARG00000075542	zfhx4	100	67.954	ENSJJAG00000022978	Zfhx4	100	69.345	Jaculus_jaculus
ENSDARG00000075542	zfhx4	98	72.051	ENSKMAG00000016330	zfhx4	100	71.263	Kryptolebias_marmoratus
ENSDARG00000075542	zfhx4	55	68.434	ENSLBEG00000021697	zfhx4	100	71.577	Labrus_bergylta
ENSDARG00000075542	zfhx4	55	78.821	ENSLOCG00000013472	zfhx4	100	78.157	Lepisosteus_oculatus
ENSDARG00000075542	zfhx4	86	69.372	ENSLAFG00000014395	ZFHX4	100	70.085	Loxodonta_africana
ENSDARG00000075542	zfhx4	55	70.435	ENSMFAG00000034757	ZFHX4	100	66.347	Macaca_fascicularis
ENSDARG00000075542	zfhx4	55	70.385	ENSMMUG00000019414	ZFHX4	100	66.320	Macaca_mulatta
ENSDARG00000075542	zfhx4	55	70.335	ENSMNEG00000041913	ZFHX4	100	66.320	Macaca_nemestrina
ENSDARG00000075542	zfhx4	55	70.235	ENSMLEG00000038977	ZFHX4	100	70.047	Mandrillus_leucophaeus
ENSDARG00000075542	zfhx4	98	76.406	ENSMAMG00000022166	zfhx4	99	74.176	Mastacembelus_armatus
ENSDARG00000075542	zfhx4	98	71.728	ENSMZEG00005021931	zfhx4	100	70.881	Maylandia_zebra
ENSDARG00000075542	zfhx4	100	67.235	ENSMAUG00000021772	-	55	68.933	Mesocricetus_auratus
ENSDARG00000075542	zfhx4	55	70.409	ENSMICG00000008252	ZFHX4	55	70.775	Microcebus_murinus
ENSDARG00000075542	zfhx4	100	70.274	ENSMMOG00000004800	zfhx4	100	69.757	Mola_mola
ENSDARG00000075542	zfhx4	72	79.054	ENSMALG00000006928	zfhx4	93	85.246	Monopterus_albus
ENSDARG00000075542	zfhx4	61	78.275	MGP_SPRETEiJ_G0025754	Zfhx4	80	80.000	Mus_spretus
ENSDARG00000075542	zfhx4	96	67.323	ENSMLUG00000016989	ZFHX4	100	69.536	Myotis_lucifugus
ENSDARG00000075542	zfhx4	98	71.748	ENSNBRG00000004502	zfhx4	97	72.702	Neolamprologus_brichardi
ENSDARG00000075542	zfhx4	93	71.437	ENSNLEG00000001972	ZFHX4	98	71.877	Nomascus_leucogenys
ENSDARG00000075542	zfhx4	53	76.302	ENSOPRG00000004454	-	53	76.661	Ochotona_princeps
ENSDARG00000075542	zfhx4	100	68.147	ENSODEG00000001283	ZFHX4	100	68.533	Octodon_degus
ENSDARG00000075542	zfhx4	100	70.207	ENSONIG00000014495	zfhx4	100	70.602	Oreochromis_niloticus
ENSDARG00000075542	zfhx4	55	70.219	ENSOCUG00000001723	ZFHX4	100	69.684	Oryctolagus_cuniculus
ENSDARG00000075542	zfhx4	98	71.343	ENSORLG00000006928	zfhx4	98	71.922	Oryzias_latipes
ENSDARG00000075542	zfhx4	72	76.372	ENSORLG00020003276	zfhx4	98	71.900	Oryzias_latipes_hni
ENSDARG00000075542	zfhx4	98	71.350	ENSORLG00015020411	zfhx4	97	71.296	Oryzias_latipes_hsok
ENSDARG00000075542	zfhx4	98	71.890	ENSOMEG00000014431	zfhx4	97	71.659	Oryzias_melastigma
ENSDARG00000075542	zfhx4	55	70.050	ENSOGAG00000000486	ZFHX4	100	69.901	Otolemur_garnettii
ENSDARG00000075542	zfhx4	100	68.615	ENSOARG00000007353	ZFHX4	98	68.286	Ovis_aries
ENSDARG00000075542	zfhx4	93	71.906	ENSPPRG00000014119	ZFHX4	92	72.350	Panthera_pardus
ENSDARG00000075542	zfhx4	98	70.635	ENSPTIG00000007657	ZFHX4	100	68.877	Panthera_tigris_altaica
ENSDARG00000075542	zfhx4	55	70.315	ENSPTRG00000020358	ZFHX4	100	70.612	Pan_troglodytes
ENSDARG00000075542	zfhx4	55	70.335	ENSPANG00000023610	ZFHX4	100	66.073	Papio_anubis
ENSDARG00000075542	zfhx4	100	80.211	ENSPKIG00000006160	zfhx4	100	80.154	Paramormyrops_kingsleyae
ENSDARG00000075542	zfhx4	100	60.527	ENSPKIG00000008778	-	100	60.696	Paramormyrops_kingsleyae
ENSDARG00000075542	zfhx4	100	70.295	ENSPSIG00000003765	ZFHX4	99	71.283	Pelodiscus_sinensis
ENSDARG00000075542	zfhx4	69	89.394	ENSPMGG00000007123	zfhx4	93	88.670	Periophthalmus_magnuspinnatus
ENSDARG00000075542	zfhx4	98	69.696	ENSPFOG00000009152	zfhx4	99	70.694	Poecilia_formosa
ENSDARG00000075542	zfhx4	98	77.720	ENSPLAG00000015099	zfhx4	100	72.230	Poecilia_latipinna
ENSDARG00000075542	zfhx4	52	72.844	ENSPREG00000016234	zfhx4	97	72.268	Poecilia_reticulata
ENSDARG00000075542	zfhx4	55	70.865	ENSPCOG00000021426	ZFHX4	55	71.045	Propithecus_coquereli
ENSDARG00000075542	zfhx4	98	68.566	ENSPVAG00000004200	ZFHX4	98	67.287	Pteropus_vampyrus
ENSDARG00000075542	zfhx4	98	69.124	ENSPNYG00000022176	zfhx4	100	70.985	Pundamilia_nyererei
ENSDARG00000075542	zfhx4	100	86.627	ENSPNAG00000022085	zfhx4	100	86.826	Pygocentrus_nattereri
ENSDARG00000075542	zfhx4	98	69.732	ENSRNOG00000008765	Zfhx4	98	69.145	Rattus_norvegicus
ENSDARG00000075542	zfhx4	55	70.215	ENSRBIG00000028413	ZFHX4	100	69.926	Rhinopithecus_bieti
ENSDARG00000075542	zfhx4	55	70.165	ENSRROG00000031310	ZFHX4	100	69.590	Rhinopithecus_roxellana
ENSDARG00000075542	zfhx4	55	70.130	ENSSBOG00000026983	ZFHX4	100	70.313	Saimiri_boliviensis_boliviensis
ENSDARG00000075542	zfhx4	100	79.944	ENSSFOG00015011589	zfhx4	100	79.972	Scleropages_formosus
ENSDARG00000075542	zfhx4	98	73.008	ENSSMAG00000019081	zfhx4	97	73.394	Scophthalmus_maximus
ENSDARG00000075542	zfhx4	52	72.208	ENSSDUG00000004192	zfhx4	99	75.289	Seriola_dumerili
ENSDARG00000075542	zfhx4	52	72.716	ENSSLDG00000010919	zfhx4	100	71.739	Seriola_lalandi_dorsalis
ENSDARG00000075542	zfhx4	88	70.381	ENSSARG00000001090	ZFHX4	85	71.114	Sorex_araneus
ENSDARG00000075542	zfhx4	55	72.570	ENSSPUG00000013032	ZFHX4	100	70.502	Sphenodon_punctatus
ENSDARG00000075542	zfhx4	86	67.625	ENSSSCG00000006169	ZFHX4	81	72.780	Sus_scrofa
ENSDARG00000075542	zfhx4	98	70.968	ENSTGUG00000011605	ZFHX4	97	71.608	Taeniopygia_guttata
ENSDARG00000075542	zfhx4	98	71.217	ENSTRUG00000000173	zfhx4	97	71.728	Takifugu_rubripes
ENSDARG00000075542	zfhx4	78	79.682	ENSTNIG00000008122	zfhx4	96	79.682	Tetraodon_nigroviridis
ENSDARG00000075542	zfhx4	89	73.156	ENSTBEG00000012567	ZFHX4	93	73.591	Tupaia_belangeri
ENSDARG00000075542	zfhx4	80	71.104	ENSTTRG00000002634	ZFHX4	85	71.029	Tursiops_truncatus
ENSDARG00000075542	zfhx4	100	69.320	ENSUAMG00000006601	ZFHX4	98	71.629	Ursus_americanus
ENSDARG00000075542	zfhx4	55	70.335	ENSUMAG00000014815	ZFHX4	98	70.393	Ursus_maritimus
ENSDARG00000075542	zfhx4	100	68.748	ENSVVUG00000019627	ZFHX4	100	71.609	Vulpes_vulpes
ENSDARG00000075542	zfhx4	100	67.540	ENSXETG00000017151	zfhx4	100	67.354	Xenopus_tropicalis
ENSDARG00000075542	zfhx4	98	71.594	ENSXCOG00000006449	zfhx4	100	72.046	Xiphophorus_couchianus
ENSDARG00000075542	zfhx4	55	67.540	ENSXMAG00000000693	zfhx4	100	71.679	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0043565	sequence-specific DNA binding	-	IEA	Function
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function