EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000075545 (Gene tree)
Gene ID: 336271
Gene Symbol: si:dkey-89b17.4
Alias: fj14g06|fj60g01|fk87f09|wu:fj14g06|wu:fj60g01|wu:fk87f09
Full Name: si:dkey-89b17.4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 15530 bases
Position: chr19:5134624-5150153
Accession: ZDB-GENE-030131-8215
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	1	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	2	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	3	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	4	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	5	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	6	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	7	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	8	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	9	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	10	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	11	12
ENSDARP00000125564	zf-C2H2	PF00096.26	2.1e-83	12	12
ENSDARP00000125118	zf-C2H2	PF00096.26	8.1e-63	1	8
ENSDARP00000125118	zf-C2H2	PF00096.26	8.1e-63	2	8
ENSDARP00000125118	zf-C2H2	PF00096.26	8.1e-63	3	8
ENSDARP00000125118	zf-C2H2	PF00096.26	8.1e-63	4	8
ENSDARP00000125118	zf-C2H2	PF00096.26	8.1e-63	5	8
ENSDARP00000125118	zf-C2H2	PF00096.26	8.1e-63	6	8
ENSDARP00000125118	zf-C2H2	PF00096.26	8.1e-63	7	8
ENSDARP00000125118	zf-C2H2	PF00096.26	8.1e-63	8	8
ENSDARP00000125650	zf-C2H2	PF00096.26	8.1e-63	1	8
ENSDARP00000125650	zf-C2H2	PF00096.26	8.1e-63	2	8
ENSDARP00000125650	zf-C2H2	PF00096.26	8.1e-63	3	8
ENSDARP00000125650	zf-C2H2	PF00096.26	8.1e-63	4	8
ENSDARP00000125650	zf-C2H2	PF00096.26	8.1e-63	5	8
ENSDARP00000125650	zf-C2H2	PF00096.26	8.1e-63	6	8
ENSDARP00000125650	zf-C2H2	PF00096.26	8.1e-63	7	8
ENSDARP00000125650	zf-C2H2	PF00096.26	8.1e-63	8	8
ENSDARP00000125596	zf-C2H2	PF00096.26	1.2e-22	1	4
ENSDARP00000125596	zf-C2H2	PF00096.26	1.2e-22	2	4
ENSDARP00000125596	zf-C2H2	PF00096.26	1.2e-22	3	4
ENSDARP00000125596	zf-C2H2	PF00096.26	1.2e-22	4	4
ENSDARP00000126257	zf-C2H2	PF00096.26	3.8e-11	1	2
ENSDARP00000126257	zf-C2H2	PF00096.26	3.8e-11	2	2
ENSDARP00000125118	zf-met	PF12874.7	5.8e-09	1	2
ENSDARP00000125118	zf-met	PF12874.7	5.8e-09	2	2
ENSDARP00000125650	zf-met	PF12874.7	5.8e-09	1	2
ENSDARP00000125650	zf-met	PF12874.7	5.8e-09	2	2
ENSDARP00000125564	zf-met	PF12874.7	1.1e-07	1	2
ENSDARP00000125564	zf-met	PF12874.7	1.1e-07	2	2
ENSDARP00000126257	zf-met	PF12874.7	3.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000138011	-	5363	XM_005159361	ENSDARP00000125564	1533 (aa)	XP_005159418	H0WFD2
ENSDART00000151310	-	888	-	ENSDARP00000126257	155 (aa)	-	I3ITI9
ENSDART00000108541	-	3750	-	ENSDARP00000125118	1249 (aa)	-	H0WE41
ENSDART00000150740	-	792	-	ENSDARP00000125596	254 (aa)	-	H0WFG4
ENSDART00000151324	-	4918	XM_002665475	ENSDARP00000125650	1249 (aa)	XP_002665521	H0WE41

Gene Model

Click here to download ENSDARG00000075545's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000075545's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000075545	si:dkey-89b17.4	88	67.532	ENSDARG00000061424	znf646	100	42.857

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000075545	si:dkey-89b17.4	97	52.227	ENSAPOG00000020151	znf646	100	41.933	Acanthochromis_polyacanthus
ENSDARG00000075545	si:dkey-89b17.4	99	65.604	ENSAPOG00000018015	si:dkey-89b17.4	99	66.540	Acanthochromis_polyacanthus
ENSDARG00000075545	si:dkey-89b17.4	100	51.807	ENSACIG00000023049	znf646	100	52.203	Amphilophus_citrinellus
ENSDARG00000075545	si:dkey-89b17.4	100	67.049	ENSACIG00000001025	si:dkey-89b17.4	100	67.471	Amphilophus_citrinellus
ENSDARG00000075545	si:dkey-89b17.4	99	65.779	ENSAOCG00000018684	si:dkey-89b17.4	99	66.718	Amphiprion_ocellaris
ENSDARG00000075545	si:dkey-89b17.4	97	51.822	ENSAOCG00000012062	znf646	100	40.700	Amphiprion_ocellaris
ENSDARG00000075545	si:dkey-89b17.4	100	66.500	ENSAPEG00000007719	si:dkey-89b17.4	100	67.333	Amphiprion_percula
ENSDARG00000075545	si:dkey-89b17.4	97	51.822	ENSAPEG00000006427	znf646	100	40.454	Amphiprion_percula
ENSDARG00000075545	si:dkey-89b17.4	99	63.333	ENSATEG00000015206	znf646	100	41.739	Anabas_testudineus
ENSDARG00000075545	si:dkey-89b17.4	99	65.800	ENSATEG00000016814	si:dkey-89b17.4	99	66.284	Anabas_testudineus
ENSDARG00000075545	si:dkey-89b17.4	91	56.098	ENSACLG00000012712	znf646	100	41.924	Astatotilapia_calliptera
ENSDARG00000075545	si:dkey-89b17.4	99	63.991	ENSACLG00000016017	si:dkey-89b17.4	99	64.400	Astatotilapia_calliptera
ENSDARG00000075545	si:dkey-89b17.4	94	50.644	ENSAMXG00000035525	znf646	100	41.230	Astyanax_mexicanus
ENSDARG00000075545	si:dkey-89b17.4	97	87.586	ENSAMXG00000001155	si:dkey-89b17.4	100	83.174	Astyanax_mexicanus
ENSDARG00000075545	si:dkey-89b17.4	100	65.153	ENSCSEG00000010769	si:dkey-89b17.4	100	65.623	Cynoglossus_semilaevis
ENSDARG00000075545	si:dkey-89b17.4	97	53.571	ENSCSEG00000012389	znf646	100	43.511	Cynoglossus_semilaevis
ENSDARG00000075545	si:dkey-89b17.4	99	64.018	ENSCVAG00000012420	si:dkey-89b17.4	99	65.467	Cyprinodon_variegatus
ENSDARG00000075545	si:dkey-89b17.4	100	75.686	ENSELUG00000015516	si:dkey-89b17.4	98	67.050	Esox_lucius
ENSDARG00000075545	si:dkey-89b17.4	100	43.409	ENSELUG00000010423	znf646	100	42.070	Esox_lucius
ENSDARG00000075545	si:dkey-89b17.4	94	58.824	ENSFHEG00000000561	znf646	98	38.251	Fundulus_heteroclitus
ENSDARG00000075545	si:dkey-89b17.4	99	64.832	ENSFHEG00000019457	si:dkey-89b17.4	99	65.830	Fundulus_heteroclitus
ENSDARG00000075545	si:dkey-89b17.4	99	51.613	ENSGMOG00000016554	znf646	99	54.839	Gadus_morhua
ENSDARG00000075545	si:dkey-89b17.4	99	64.357	ENSGAFG00000000345	si:dkey-89b17.4	99	65.464	Gambusia_affinis
ENSDARG00000075545	si:dkey-89b17.4	92	48.936	ENSGAFG00000016353	-	88	51.316	Gambusia_affinis
ENSDARG00000075545	si:dkey-89b17.4	97	61.570	ENSGACG00000014714	si:dkey-89b17.4	99	50.937	Gasterosteus_aculeatus
ENSDARG00000075545	si:dkey-89b17.4	93	61.682	ENSGACG00000008733	znf646	99	58.491	Gasterosteus_aculeatus
ENSDARG00000075545	si:dkey-89b17.4	99	64.067	ENSHBUG00000013093	si:dkey-89b17.4	99	64.477	Haplochromis_burtoni
ENSDARG00000075545	si:dkey-89b17.4	91	54.762	ENSHBUG00000004840	znf646	100	41.209	Haplochromis_burtoni
ENSDARG00000075545	si:dkey-89b17.4	100	64.353	ENSHCOG00000001901	si:dkey-89b17.4	100	65.025	Hippocampus_comes
ENSDARG00000075545	si:dkey-89b17.4	91	50.000	ENSHCOG00000014890	znf646	100	39.472	Hippocampus_comes
ENSDARG00000075545	si:dkey-89b17.4	99	50.855	ENSIPUG00000018102	znf646	100	41.825	Ictalurus_punctatus
ENSDARG00000075545	si:dkey-89b17.4	100	87.795	ENSIPUG00000012845	si:dkey-89b17.4	98	81.607	Ictalurus_punctatus
ENSDARG00000075545	si:dkey-89b17.4	91	45.794	ENSIPUG00000012830	-	83	66.917	Ictalurus_punctatus
ENSDARG00000075545	si:dkey-89b17.4	98	50.538	ENSKMAG00000011982	znf646	99	40.852	Kryptolebias_marmoratus
ENSDARG00000075545	si:dkey-89b17.4	99	64.728	ENSKMAG00000014037	si:dkey-89b17.4	99	65.417	Kryptolebias_marmoratus
ENSDARG00000075545	si:dkey-89b17.4	99	66.081	ENSLBEG00000020291	si:dkey-89b17.4	99	65.852	Labrus_bergylta
ENSDARG00000075545	si:dkey-89b17.4	97	55.844	ENSLBEG00000016562	znf646	100	41.486	Labrus_bergylta
ENSDARG00000075545	si:dkey-89b17.4	96	51.613	ENSLOCG00000003238	si:dkey-89b17.4	99	50.794	Lepisosteus_oculatus
ENSDARG00000075545	si:dkey-89b17.4	99	66.082	ENSMAMG00000009604	si:dkey-89b17.4	99	66.311	Mastacembelus_armatus
ENSDARG00000075545	si:dkey-89b17.4	86	64.444	ENSMAMG00000009313	znf646	100	42.742	Mastacembelus_armatus
ENSDARG00000075545	si:dkey-89b17.4	99	63.991	ENSMZEG00005003901	si:dkey-89b17.4	99	64.400	Maylandia_zebra
ENSDARG00000075545	si:dkey-89b17.4	99	50.000	ENSMZEG00005011264	znf646	98	52.083	Maylandia_zebra
ENSDARG00000075545	si:dkey-89b17.4	99	53.846	ENSMMOG00000002311	znf646	98	53.846	Mola_mola
ENSDARG00000075545	si:dkey-89b17.4	100	67.898	ENSMMOG00000012741	si:dkey-89b17.4	100	68.424	Mola_mola
ENSDARG00000075545	si:dkey-89b17.4	98	37.104	ENSMALG00000002274	-	98	41.365	Monopterus_albus
ENSDARG00000075545	si:dkey-89b17.4	100	66.314	ENSMALG00000019558	si:dkey-89b17.4	100	66.646	Monopterus_albus
ENSDARG00000075545	si:dkey-89b17.4	91	56.098	ENSNBRG00000022534	znf646	100	41.296	Neolamprologus_brichardi
ENSDARG00000075545	si:dkey-89b17.4	100	64.997	ENSNBRG00000020314	si:dkey-89b17.4	100	65.394	Neolamprologus_brichardi
ENSDARG00000075545	si:dkey-89b17.4	92	65.385	ENSONIG00000009324	si:dkey-89b17.4	99	65.385	Oreochromis_niloticus
ENSDARG00000075545	si:dkey-89b17.4	93	44.872	ENSONIG00000019947	-	99	44.872	Oreochromis_niloticus
ENSDARG00000075545	si:dkey-89b17.4	100	64.613	ENSORLG00000024255	si:dkey-89b17.4	100	64.758	Oryzias_latipes
ENSDARG00000075545	si:dkey-89b17.4	90	66.292	ENSORLG00000007885	znf646	100	40.858	Oryzias_latipes
ENSDARG00000075545	si:dkey-89b17.4	90	66.292	ENSORLG00020010285	znf646	100	40.488	Oryzias_latipes_hni
ENSDARG00000075545	si:dkey-89b17.4	90	65.909	ENSORLG00015008733	znf646	100	40.138	Oryzias_latipes_hsok
ENSDARG00000075545	si:dkey-89b17.4	100	65.019	ENSOMEG00000020587	si:dkey-89b17.4	100	64.928	Oryzias_melastigma
ENSDARG00000075545	si:dkey-89b17.4	98	48.583	ENSOMEG00000015658	znf646	99	40.239	Oryzias_melastigma
ENSDARG00000075545	si:dkey-89b17.4	99	56.452	ENSPMGG00000004639	znf646	99	33.333	Periophthalmus_magnuspinnatus
ENSDARG00000075545	si:dkey-89b17.4	98	59.472	ENSPMGG00000015931	-	94	59.133	Periophthalmus_magnuspinnatus
ENSDARG00000075545	si:dkey-89b17.4	90	40.000	ENSPFOG00000004826	-	99	40.714	Poecilia_formosa
ENSDARG00000075545	si:dkey-89b17.4	100	65.669	ENSPFOG00000008241	si:dkey-89b17.4	100	67.027	Poecilia_formosa
ENSDARG00000075545	si:dkey-89b17.4	99	54.237	ENSPLAG00000010454	-	99	42.186	Poecilia_latipinna
ENSDARG00000075545	si:dkey-89b17.4	99	65.647	ENSPLAG00000011382	si:dkey-89b17.4	99	66.953	Poecilia_latipinna
ENSDARG00000075545	si:dkey-89b17.4	96	46.067	ENSPMEG00000018283	znf646	99	50.000	Poecilia_mexicana
ENSDARG00000075545	si:dkey-89b17.4	99	65.725	ENSPMEG00000000141	si:dkey-89b17.4	99	67.031	Poecilia_mexicana
ENSDARG00000075545	si:dkey-89b17.4	99	64.040	ENSPREG00000012579	si:dkey-89b17.4	99	65.594	Poecilia_reticulata
ENSDARG00000075545	si:dkey-89b17.4	97	39.892	ENSPREG00000017637	znf646	99	46.429	Poecilia_reticulata
ENSDARG00000075545	si:dkey-89b17.4	91	56.098	ENSPNYG00000017692	znf646	100	41.147	Pundamilia_nyererei
ENSDARG00000075545	si:dkey-89b17.4	99	64.067	ENSPNYG00000011901	si:dkey-89b17.4	99	64.477	Pundamilia_nyererei
ENSDARG00000075545	si:dkey-89b17.4	100	84.556	ENSPNAG00000022072	si:dkey-89b17.4	98	83.072	Pygocentrus_nattereri
ENSDARG00000075545	si:dkey-89b17.4	99	55.217	ENSPNAG00000000750	znf646	99	47.619	Pygocentrus_nattereri
ENSDARG00000075545	si:dkey-89b17.4	94	50.000	ENSSFOG00015004737	si:dkey-89b17.4	100	43.842	Scleropages_formosus
ENSDARG00000075545	si:dkey-89b17.4	85	65.517	ENSSMAG00000012378	znf646	100	42.289	Scophthalmus_maximus
ENSDARG00000075545	si:dkey-89b17.4	89	64.444	ENSSDUG00000002675	znf646	100	42.937	Seriola_dumerili
ENSDARG00000075545	si:dkey-89b17.4	99	66.209	ENSSDUG00000015931	si:dkey-89b17.4	99	66.260	Seriola_dumerili
ENSDARG00000075545	si:dkey-89b17.4	89	64.444	ENSSLDG00000018521	znf646	100	42.495	Seriola_lalandi_dorsalis
ENSDARG00000075545	si:dkey-89b17.4	99	66.285	ENSSLDG00000012415	si:dkey-89b17.4	99	66.337	Seriola_lalandi_dorsalis
ENSDARG00000075545	si:dkey-89b17.4	99	65.732	ENSSPAG00000018810	si:dkey-89b17.4	99	66.413	Stegastes_partitus
ENSDARG00000075545	si:dkey-89b17.4	97	52.632	ENSSPAG00000016701	znf646	100	42.804	Stegastes_partitus
ENSDARG00000075545	si:dkey-89b17.4	100	67.136	ENSTRUG00000020495	si:dkey-89b17.4	100	67.348	Takifugu_rubripes
ENSDARG00000075545	si:dkey-89b17.4	95	51.739	ENSTRUG00000025597	znf646	100	41.646	Takifugu_rubripes
ENSDARG00000075545	si:dkey-89b17.4	72	68.354	ENSTNIG00000000073	znf646	99	45.217	Tetraodon_nigroviridis
ENSDARG00000075545	si:dkey-89b17.4	99	43.396	ENSTNIG00000001159	si:dkey-89b17.4	99	46.134	Tetraodon_nigroviridis
ENSDARG00000075545	si:dkey-89b17.4	90	50.000	ENSXCOG00000002714	-	96	50.000	Xiphophorus_couchianus
ENSDARG00000075545	si:dkey-89b17.4	100	66.304	ENSXCOG00000001645	si:dkey-89b17.4	100	67.006	Xiphophorus_couchianus
ENSDARG00000075545	si:dkey-89b17.4	100	66.304	ENSXMAG00000024528	si:dkey-89b17.4	100	67.070	Xiphophorus_maculatus
ENSDARG00000075545	si:dkey-89b17.4	97	48.571	ENSXMAG00000018743	-	96	49.275	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function