EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000076176 (Gene tree)
Gene ID: 570247
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 11245 bases
Position: chr1:8555323-8566567
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000104026	PPR	PF01535.20	1.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000114613	-	2344	XM_021475942	ENSDARP00000104026	697 (aa)	XP_021331617	E7F3M0

Gene Model

Click here to download ENSDARG00000076176's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000076176's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000076176	ptcd1	99	45.631	ENSG00000248919	ATP5MF-PTCD1	94	45.631	Homo_sapiens
ENSDARG00000076176	ptcd1	88	49.839	ENSG00000106246	PTCD1	87	49.521	Homo_sapiens
ENSDARG00000076176	ptcd1	81	53.546	ENSAPOG00000010679	ptcd1	85	53.546	Acanthochromis_polyacanthus
ENSDARG00000076176	ptcd1	90	50.079	ENSAMEG00000006224	-	83	50.079	Ailuropoda_melanoleuca
ENSDARG00000076176	ptcd1	85	54.746	ENSACIG00000017861	ptcd1	84	54.746	Amphilophus_citrinellus
ENSDARG00000076176	ptcd1	86	52.658	ENSAOCG00000020741	-	82	52.658	Amphiprion_ocellaris
ENSDARG00000076176	ptcd1	81	53.014	ENSAOCG00000022617	ptcd1	82	53.014	Amphiprion_ocellaris
ENSDARG00000076176	ptcd1	86	52.658	ENSAPEG00000022632	ptcd1	82	52.658	Amphiprion_percula
ENSDARG00000076176	ptcd1	89	52.488	ENSATEG00000007016	ptcd1	84	52.488	Anabas_testudineus
ENSDARG00000076176	ptcd1	87	52.117	ENSAPLG00000006862	-	96	51.608	Anas_platyrhynchos
ENSDARG00000076176	ptcd1	90	50.789	ENSACAG00000012871	-	82	50.789	Anolis_carolinensis
ENSDARG00000076176	ptcd1	87	49.511	ENSANAG00000035790	-	89	49.194	Aotus_nancymaae
ENSDARG00000076176	ptcd1	88	52.195	ENSACLG00000002824	ptcd1	84	52.195	Astatotilapia_calliptera
ENSDARG00000076176	ptcd1	88	64.567	ENSAMXG00000037292	ptcd1	88	64.567	Astyanax_mexicanus
ENSDARG00000076176	ptcd1	88	51.461	ENSBTAG00000020440	-	75	51.461	Bos_taurus
ENSDARG00000076176	ptcd1	87	50.492	ENSCJAG00000015815	-	92	48.615	Callithrix_jacchus
ENSDARG00000076176	ptcd1	90	49.686	ENSCAFG00000015055	-	83	49.686	Canis_familiaris
ENSDARG00000076176	ptcd1	90	49.686	ENSCAFG00020014480	-	83	49.686	Canis_lupus_dingo
ENSDARG00000076176	ptcd1	89	50.886	ENSCHIG00000027000	-	87	51.204	Capra_hircus
ENSDARG00000076176	ptcd1	87	48.953	ENSTSYG00000029495	-	88	49.522	Carlito_syrichta
ENSDARG00000076176	ptcd1	88	48.622	ENSCAPG00000014660	-	93	48.475	Cavia_aperea
ENSDARG00000076176	ptcd1	88	49.271	ENSCPOG00000001780	-	87	49.117	Cavia_porcellus
ENSDARG00000076176	ptcd1	87	50.409	ENSCCAG00000034025	-	87	49.758	Cebus_capucinus
ENSDARG00000076176	ptcd1	88	49.758	ENSCATG00000040859	-	89	49.531	Cercocebus_atys
ENSDARG00000076176	ptcd1	88	49.191	ENSCLAG00000006354	-	87	49.199	Chinchilla_lanigera
ENSDARG00000076176	ptcd1	84	48.414	ENSCSAG00000017794	-	85	49.322	Chlorocebus_sabaeus
ENSDARG00000076176	ptcd1	94	47.612	ENSCPBG00000020866	-	92	47.902	Chrysemys_picta_bellii
ENSDARG00000076176	ptcd1	76	30.055	ENSCING00000007717	-	90	30.055	Ciona_intestinalis
ENSDARG00000076176	ptcd1	89	49.600	ENSCANG00000023441	-	87	49.521	Colobus_angolensis_palliatus
ENSDARG00000076176	ptcd1	88	49.111	ENSCGRG00001023686	Ptcd1	86	49.273	Cricetulus_griseus_chok1gshd
ENSDARG00000076176	ptcd1	88	49.111	ENSCGRG00000015031	Ptcd1	86	49.273	Cricetulus_griseus_crigri
ENSDARG00000076176	ptcd1	88	49.120	ENSCSEG00000002378	ptcd1	85	49.120	Cynoglossus_semilaevis
ENSDARG00000076176	ptcd1	93	49.924	ENSCVAG00000015826	ptcd1	88	49.924	Cyprinodon_variegatus
ENSDARG00000076176	ptcd1	92	50.077	ENSCVAG00000003621	ptcd1	92	50.077	Cyprinodon_variegatus
ENSDARG00000076176	ptcd1	89	49.596	ENSDNOG00000009957	-	87	49.758	Dasypus_novemcinctus
ENSDARG00000076176	ptcd1	86	49.751	ENSDORG00000000740	Ptcd1	87	49.755	Dipodomys_ordii
ENSDARG00000076176	ptcd1	88	37.818	ENSEBUG00000014515	ptcd1	97	37.973	Eptatretus_burgeri
ENSDARG00000076176	ptcd1	88	49.756	ENSEASG00005002480	-	86	50.401	Equus_asinus_asinus
ENSDARG00000076176	ptcd1	88	49.431	ENSECAG00000016617	-	86	49.919	Equus_caballus
ENSDARG00000076176	ptcd1	90	49.619	ENSELUG00000016517	ptcd1	87	49.619	Esox_lucius
ENSDARG00000076176	ptcd1	90	49.685	ENSFCAG00000015069	-	89	49.685	Felis_catus
ENSDARG00000076176	ptcd1	88	51.030	ENSFALG00000013803	-	87	50.709	Ficedula_albicollis
ENSDARG00000076176	ptcd1	87	49.103	ENSFDAG00000006393	-	87	48.950	Fukomys_damarensis
ENSDARG00000076176	ptcd1	76	50.657	ENSFHEG00000012491	ptcd1	89	50.657	Fundulus_heteroclitus
ENSDARG00000076176	ptcd1	83	50.515	ENSGMOG00000007639	ptcd1	91	50.515	Gadus_morhua
ENSDARG00000076176	ptcd1	87	50.317	ENSGALG00000004711	-	87	50.235	Gallus_gallus
ENSDARG00000076176	ptcd1	93	48.653	ENSGAFG00000013175	ptcd1	92	48.653	Gambusia_affinis
ENSDARG00000076176	ptcd1	91	53.061	ENSGACG00000016607	ptcd1	95	53.061	Gasterosteus_aculeatus
ENSDARG00000076176	ptcd1	87	48.320	ENSGAGG00000021832	-	92	48.960	Gopherus_agassizii
ENSDARG00000076176	ptcd1	88	50.000	ENSGGOG00000015123	-	87	49.681	Gorilla_gorilla
ENSDARG00000076176	ptcd1	88	52.195	ENSHBUG00000018275	ptcd1	84	52.195	Haplochromis_burtoni
ENSDARG00000076176	ptcd1	88	48.943	ENSHGLG00000017621	-	87	48.470	Heterocephalus_glaber_female
ENSDARG00000076176	ptcd1	88	48.943	ENSHGLG00100007218	-	87	48.470	Heterocephalus_glaber_male
ENSDARG00000076176	ptcd1	85	51.100	ENSHCOG00000010784	ptcd1	82	51.443	Hippocampus_comes
ENSDARG00000076176	ptcd1	89	49.596	ENSSTOG00000001682	-	86	49.597	Ictidomys_tridecemlineatus
ENSDARG00000076176	ptcd1	87	49.837	ENSJJAG00000000319	Ptcd1	87	49.838	Jaculus_jaculus
ENSDARG00000076176	ptcd1	90	50.955	ENSKMAG00000008708	ptcd1	84	51.424	Kryptolebias_marmoratus
ENSDARG00000076176	ptcd1	92	50.077	ENSLBEG00000008061	ptcd1	88	50.536	Labrus_bergylta
ENSDARG00000076176	ptcd1	89	51.189	ENSLACG00000011172	ptcd1	87	51.823	Latimeria_chalumnae
ENSDARG00000076176	ptcd1	95	50.213	ENSLOCG00000004833	ptcd1	93	53.554	Lepisosteus_oculatus
ENSDARG00000076176	ptcd1	87	49.427	ENSLAFG00000002588	-	86	49.427	Loxodonta_africana
ENSDARG00000076176	ptcd1	88	49.758	ENSMFAG00000041324	-	89	49.531	Macaca_fascicularis
ENSDARG00000076176	ptcd1	99	45.429	ENSMMUG00000030408	-	94	45.845	Macaca_mulatta
ENSDARG00000076176	ptcd1	88	49.522	ENSMNEG00000043786	-	89	49.307	Macaca_nemestrina
ENSDARG00000076176	ptcd1	88	35.494	ENSMLEG00000031179	-	87	35.737	Mandrillus_leucophaeus
ENSDARG00000076176	ptcd1	86	54.591	ENSMAMG00000007623	ptcd1	81	54.591	Mastacembelus_armatus
ENSDARG00000076176	ptcd1	88	52.033	ENSMZEG00005012722	ptcd1	84	52.033	Maylandia_zebra
ENSDARG00000076176	ptcd1	86	50.732	ENSMGAG00000004211	-	79	51.220	Meleagris_gallopavo
ENSDARG00000076176	ptcd1	87	48.777	ENSMICG00000017428	-	86	49.355	Microcebus_murinus
ENSDARG00000076176	ptcd1	94	48.353	ENSMMOG00000020243	ptcd1	99	48.503	Mola_mola
ENSDARG00000076176	ptcd1	88	48.320	ENSMODG00000001350	-	84	48.320	Monodelphis_domestica
ENSDARG00000076176	ptcd1	89	53.045	ENSMALG00000018442	ptcd1	83	53.045	Monopterus_albus
ENSDARG00000076176	ptcd1	88	49.756	MGP_CAROLIEiJ_G0028011	Ptcd1	87	49.756	Mus_caroli
ENSDARG00000076176	ptcd1	88	49.757	ENSMUSG00000029624	Ptcd1	87	49.757	Mus_musculus
ENSDARG00000076176	ptcd1	88	50.485	MGP_PahariEiJ_G0024580	Ptcd1	87	51.129	Mus_pahari
ENSDARG00000076176	ptcd1	88	49.919	MGP_SPRETEiJ_G0029012	Ptcd1	87	49.919	Mus_spretus
ENSDARG00000076176	ptcd1	89	49.117	ENSMPUG00000016518	-	89	48.986	Mustela_putorius_furo
ENSDARG00000076176	ptcd1	88	51.050	ENSMLUG00000010994	-	87	48.837	Myotis_lucifugus
ENSDARG00000076176	ptcd1	88	52.836	ENSNBRG00000010079	ptcd1	86	53.094	Neolamprologus_brichardi
ENSDARG00000076176	ptcd1	78	50.366	ENSNLEG00000011060	-	91	50.366	Nomascus_leucogenys
ENSDARG00000076176	ptcd1	87	48.929	ENSMEUG00000006930	-	86	48.929	Notamacropus_eugenii
ENSDARG00000076176	ptcd1	77	55.738	ENSOPRG00000013647	-	76	58.197	Ochotona_princeps
ENSDARG00000076176	ptcd1	86	49.753	ENSONIG00000003168	ptcd1	97	49.753	Oreochromis_niloticus
ENSDARG00000076176	ptcd1	80	44.815	ENSOANG00000007728	-	73	44.815	Ornithorhynchus_anatinus
ENSDARG00000076176	ptcd1	87	50.000	ENSOCUG00000010584	-	85	49.757	Oryctolagus_cuniculus
ENSDARG00000076176	ptcd1	90	50.943	ENSORLG00000009275	ptcd1	90	50.943	Oryzias_latipes
ENSDARG00000076176	ptcd1	90	50.943	ENSORLG00020000988	ptcd1	90	50.943	Oryzias_latipes_hni
ENSDARG00000076176	ptcd1	90	50.472	ENSORLG00015010557	ptcd1	90	50.472	Oryzias_latipes_hsok
ENSDARG00000076176	ptcd1	92	48.788	ENSOMEG00000020627	ptcd1	95	48.788	Oryzias_melastigma
ENSDARG00000076176	ptcd1	87	47.764	ENSOGAG00000010877	-	87	47.634	Otolemur_garnettii
ENSDARG00000076176	ptcd1	89	46.900	ENSOARG00000018676	-	87	46.910	Ovis_aries
ENSDARG00000076176	ptcd1	88	49.355	ENSPPAG00000036024	-	87	49.042	Pan_paniscus
ENSDARG00000076176	ptcd1	90	49.685	ENSPPRG00000003478	-	90	49.685	Panthera_pardus
ENSDARG00000076176	ptcd1	88	49.677	ENSPTRG00000019452	-	87	49.361	Pan_troglodytes
ENSDARG00000076176	ptcd1	88	49.045	ENSPANG00000016730	-	89	48.844	Papio_anubis
ENSDARG00000076176	ptcd1	93	49.776	ENSPKIG00000014215	ptcd1	93	50.224	Paramormyrops_kingsleyae
ENSDARG00000076176	ptcd1	86	48.197	ENSPSIG00000011184	-	99	49.344	Pelodiscus_sinensis
ENSDARG00000076176	ptcd1	74	40.421	ENSPMAG00000009667	ptcd1	100	39.655	Petromyzon_marinus
ENSDARG00000076176	ptcd1	87	48.077	ENSPCIG00000024778	-	89	46.707	Phascolarctos_cinereus
ENSDARG00000076176	ptcd1	94	48.060	ENSPFOG00000004458	ptcd1	92	48.204	Poecilia_formosa
ENSDARG00000076176	ptcd1	94	48.588	ENSPLAG00000011051	ptcd1	92	47.839	Poecilia_latipinna
ENSDARG00000076176	ptcd1	94	48.209	ENSPMEG00000020547	ptcd1	92	48.353	Poecilia_mexicana
ENSDARG00000076176	ptcd1	93	49.319	ENSPREG00000000059	ptcd1	92	49.319	Poecilia_reticulata
ENSDARG00000076176	ptcd1	89	49.681	ENSPPYG00000017377	-	93	49.681	Pongo_abelii
ENSDARG00000076176	ptcd1	78	60.484	ENSPCAG00000001852	-	84	60.484	Procavia_capensis
ENSDARG00000076176	ptcd1	87	50.162	ENSPCOG00000018596	-	87	50.242	Propithecus_coquereli
ENSDARG00000076176	ptcd1	62	55.000	ENSPVAG00000007529	-	64	55.000	Pteropus_vampyrus
ENSDARG00000076176	ptcd1	88	52.033	ENSPNYG00000019993	ptcd1	84	52.033	Pundamilia_nyererei
ENSDARG00000076176	ptcd1	88	66.395	ENSPNAG00000014931	ptcd1	89	66.395	Pygocentrus_nattereri
ENSDARG00000076176	ptcd1	94	47.813	ENSRNOG00000000987	Ptcd1	92	47.964	Rattus_norvegicus
ENSDARG00000076176	ptcd1	89	49.211	ENSRBIG00000043393	-	87	49.211	Rhinopithecus_bieti
ENSDARG00000076176	ptcd1	89	49.760	ENSRROG00000036420	-	87	49.760	Rhinopithecus_roxellana
ENSDARG00000076176	ptcd1	88	50.405	ENSSBOG00000024114	-	87	50.080	Saimiri_boliviensis_boliviensis
ENSDARG00000076176	ptcd1	87	50.327	ENSSHAG00000011376	-	91	50.327	Sarcophilus_harrisii
ENSDARG00000076176	ptcd1	88	55.751	ENSSFOG00015007909	ptcd1	83	55.751	Scleropages_formosus
ENSDARG00000076176	ptcd1	84	52.027	ENSSMAG00000000218	ptcd1	91	52.020	Scophthalmus_maximus
ENSDARG00000076176	ptcd1	89	53.724	ENSSDUG00000015671	ptcd1	87	53.724	Seriola_dumerili
ENSDARG00000076176	ptcd1	89	53.081	ENSSLDG00000014261	ptcd1	87	53.081	Seriola_lalandi_dorsalis
ENSDARG00000076176	ptcd1	89	48.362	ENSSPUG00000003540	-	85	48.830	Sphenodon_punctatus
ENSDARG00000076176	ptcd1	86	53.234	ENSSPAG00000011049	ptcd1	82	53.400	Stegastes_partitus
ENSDARG00000076176	ptcd1	87	50.163	ENSSSCG00000007622	-	92	49.919	Sus_scrofa
ENSDARG00000076176	ptcd1	87	50.485	ENSTGUG00000007563	-	98	50.980	Taeniopygia_guttata
ENSDARG00000076176	ptcd1	93	50.379	ENSTRUG00000013471	ptcd1	88	50.379	Takifugu_rubripes
ENSDARG00000076176	ptcd1	84	52.470	ENSTNIG00000008271	ptcd1	83	52.470	Tetraodon_nigroviridis
ENSDARG00000076176	ptcd1	94	47.440	ENSTBEG00000011021	-	91	47.440	Tupaia_belangeri
ENSDARG00000076176	ptcd1	97	47.788	ENSTTRG00000003006	-	93	47.788	Tursiops_truncatus
ENSDARG00000076176	ptcd1	90	49.054	ENSUAMG00000008049	-	89	49.685	Ursus_americanus
ENSDARG00000076176	ptcd1	90	50.079	ENSVVUG00000008836	-	88	50.079	Vulpes_vulpes
ENSDARG00000076176	ptcd1	85	48.926	ENSXETG00000009891	ptcd1	86	48.933	Xenopus_tropicalis
ENSDARG00000076176	ptcd1	93	48.204	ENSXMAG00000015540	ptcd1	92	48.657	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0005759	mitochondrial matrix	21873635.	IBA	Component
GO:0042780	tRNA 3'-end processing	21873635.	IBA	Process