EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000076472 (Gene tree)
Gene ID: 792456
Gene Symbol: ovol1a
Alias: ovol1|sb:cb956|zgc:171804
Full Name: ovo-like zinc finger 1a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 12469 bases
Position: chr7:19835569-19848037
Accession: ZDB-GENE-031010-37
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000124196	zf-C2H2	PF00096.26	3.7e-16	1	3
ENSDARP00000124196	zf-C2H2	PF00096.26	3.7e-16	2	3
ENSDARP00000124196	zf-C2H2	PF00096.26	3.7e-16	3	3
ENSDARP00000124196	zf-met	PF12874.7	5e-06	1	2
ENSDARP00000124196	zf-met	PF12874.7	5e-06	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000149812	-	2536	XM_021477614	ENSDARP00000124196	319 (aa)	XP_021333289	F8W4G4

Gene Model

Click here to download ENSDARG00000076472's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000076472's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000076472	ovol1a	87	52.669	ENSDARG00000078256	ovol1b	90	52.669

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000076472	ovol1a	99	47.040	ENSAMXG00000041879	ovol1b	98	47.040	Astyanax_mexicanus
ENSDARG00000076472	ovol1a	100	69.846	ENSAMXG00000011046	ovol1a	99	72.086	Astyanax_mexicanus
ENSDARG00000076472	ovol1a	100	62.537	ENSELUG00000000343	ovol1a	98	62.537	Esox_lucius
ENSDARG00000076472	ovol1a	90	58.307	ENSFHEG00000002773	-	98	56.286	Fundulus_heteroclitus
ENSDARG00000076472	ovol1a	100	50.305	ENSGACG00000018794	ovol1a	99	50.156	Gasterosteus_aculeatus
ENSDARG00000076472	ovol1a	100	58.621	ENSHCOG00000015860	ovol1a	99	58.621	Hippocampus_comes
ENSDARG00000076472	ovol1a	99	54.416	ENSKMAG00000002605	-	98	56.160	Kryptolebias_marmoratus
ENSDARG00000076472	ovol1a	100	55.742	ENSMAMG00000009768	ovol1a	99	56.303	Mastacembelus_armatus
ENSDARG00000076472	ovol1a	100	57.670	ENSMALG00000008421	ovol1a	99	57.670	Monopterus_albus
ENSDARG00000076472	ovol1a	91	63.051	ENSPKIG00000024718	ovol1a	99	60.121	Paramormyrops_kingsleyae
ENSDARG00000076472	ovol1a	73	84.848	ENSPFOG00000008841	-	98	56.849	Poecilia_formosa
ENSDARG00000076472	ovol1a	100	72.981	ENSPNAG00000020630	ovol1a	99	72.981	Pygocentrus_nattereri
ENSDARG00000076472	ovol1a	88	49.648	ENSPNAG00000016198	ovol1b	93	49.648	Pygocentrus_nattereri
ENSDARG00000076472	ovol1a	100	53.134	ENSSDUG00000009846	ovol1a	99	54.795	Seriola_dumerili
ENSDARG00000076472	ovol1a	66	54.545	ENSXCOG00000006461	-	77	54.545	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001755	neural crest cell migration	20463035.	IGI	Process
GO:0001755	neural crest cell migration	20463035.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	20463035.	IDA	Component
GO:0009913	epidermal cell differentiation	21873635.	IBA	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0070285	pigment cell development	20463035.	IGI	Process
GO:0070285	pigment cell development	20463035.	IMP	Process
GO:0090150	establishment of protein localization to membrane	20463035.	IMP	Process