EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000076509 (Gene tree)
Gene ID: 436588
Gene Symbol: polr2d
Alias: rnap|wu:fa95b11|zgc:110435
Full Name: polymerase (RNA) II (DNA directed) polypeptide D
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 5210 bases
Position: chr2:1124512-1129721
Accession: ZDB-GENE-040714-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000099022	RNA_pol_Rpb4	PF03874.16	9.1e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000108718	-	613	-	ENSDARP00000099022	141 (aa)	-	Q6DRG4

Gene Model

Click here to download ENSDARG00000076509's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000076509's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000076509	polr2d	100	92.254	ENSG00000144231	POLR2D	100	97.115	Homo_sapiens
ENSDARG00000076509	polr2d	99	93.571	ENSAPOG00000023553	polr2d	97	93.571	Acanthochromis_polyacanthus
ENSDARG00000076509	polr2d	100	90.972	ENSAMEG00000011746	POLR2D	100	90.972	Ailuropoda_melanoleuca
ENSDARG00000076509	polr2d	99	93.571	ENSAOCG00000007295	polr2d	97	93.571	Amphiprion_ocellaris
ENSDARG00000076509	polr2d	99	93.571	ENSAPEG00000018714	polr2d	97	93.571	Amphiprion_percula
ENSDARG00000076509	polr2d	100	93.750	ENSATEG00000020416	polr2d	100	93.750	Anabas_testudineus
ENSDARG00000076509	polr2d	100	92.254	ENSACAG00000005255	POLR2D	100	92.254	Anolis_carolinensis
ENSDARG00000076509	polr2d	100	92.254	ENSANAG00000019959	POLR2D	100	92.254	Aotus_nancymaae
ENSDARG00000076509	polr2d	100	92.361	ENSACLG00000009919	polr2d	100	70.139	Astatotilapia_calliptera
ENSDARG00000076509	polr2d	99	96.429	ENSAMXG00000008954	polr2d	98	96.429	Astyanax_mexicanus
ENSDARG00000076509	polr2d	100	92.254	ENSBTAG00000053244	POLR2D	100	92.254	Bos_taurus
ENSDARG00000076509	polr2d	99	57.639	WBGene00018391	rpb-4	100	57.639	Caenorhabditis_elegans
ENSDARG00000076509	polr2d	100	92.254	ENSCJAG00000042216	-	100	92.254	Callithrix_jacchus
ENSDARG00000076509	polr2d	100	91.549	ENSCJAG00000021814	-	100	91.549	Callithrix_jacchus
ENSDARG00000076509	polr2d	100	92.254	ENSCAFG00000004311	POLR2D	100	92.254	Canis_familiaris
ENSDARG00000076509	polr2d	100	92.254	ENSCAFG00020003617	POLR2D	100	92.254	Canis_lupus_dingo
ENSDARG00000076509	polr2d	100	92.254	ENSCHIG00000025995	POLR2D	100	92.254	Capra_hircus
ENSDARG00000076509	polr2d	83	95.726	ENSTSYG00000036021	POLR2D	100	95.726	Carlito_syrichta
ENSDARG00000076509	polr2d	100	91.549	ENSCPOG00000002571	POLR2D	100	91.549	Cavia_porcellus
ENSDARG00000076509	polr2d	100	92.254	ENSCCAG00000037709	POLR2D	100	92.254	Cebus_capucinus
ENSDARG00000076509	polr2d	100	92.254	ENSCATG00000036749	POLR2D	100	92.254	Cercocebus_atys
ENSDARG00000076509	polr2d	100	91.549	ENSCLAG00000004449	POLR2D	100	91.549	Chinchilla_lanigera
ENSDARG00000076509	polr2d	100	92.254	ENSCSAG00000016861	POLR2D	100	92.254	Chlorocebus_sabaeus
ENSDARG00000076509	polr2d	83	96.581	ENSCHOG00000013850	POLR2D	100	96.581	Choloepus_hoffmanni
ENSDARG00000076509	polr2d	100	92.958	ENSCPBG00000019132	POLR2D	51	92.958	Chrysemys_picta_bellii
ENSDARG00000076509	polr2d	91	87.500	ENSCING00000011474	-	96	87.500	Ciona_intestinalis
ENSDARG00000076509	polr2d	91	88.281	ENSCSAVG00000008353	-	88	88.281	Ciona_savignyi
ENSDARG00000076509	polr2d	100	92.254	ENSCANG00000043665	POLR2D	100	92.254	Colobus_angolensis_palliatus
ENSDARG00000076509	polr2d	100	92.254	ENSCGRG00001013608	Polr2d	100	92.254	Cricetulus_griseus_chok1gshd
ENSDARG00000076509	polr2d	83	96.581	ENSCGRG00000012624	Polr2d	100	96.581	Cricetulus_griseus_crigri
ENSDARG00000076509	polr2d	99	94.286	ENSCSEG00000006147	polr2d	97	94.286	Cynoglossus_semilaevis
ENSDARG00000076509	polr2d	100	92.361	ENSCVAG00000000779	polr2d	100	92.361	Cyprinodon_variegatus
ENSDARG00000076509	polr2d	100	92.254	ENSDNOG00000008527	POLR2D	100	92.254	Dasypus_novemcinctus
ENSDARG00000076509	polr2d	100	92.254	ENSDORG00000026897	Polr2d	100	92.254	Dipodomys_ordii
ENSDARG00000076509	polr2d	94	78.947	FBgn0263757	Rpb4	96	78.947	Drosophila_melanogaster
ENSDARG00000076509	polr2d	100	92.958	ENSEBUG00000007675	polr2d	100	92.958	Eptatretus_burgeri
ENSDARG00000076509	polr2d	100	92.254	ENSEASG00005007103	POLR2D	100	92.254	Equus_asinus_asinus
ENSDARG00000076509	polr2d	100	92.254	ENSECAG00000000556	POLR2D	100	92.254	Equus_caballus
ENSDARG00000076509	polr2d	100	94.406	ENSELUG00000005928	polr2d	100	94.406	Esox_lucius
ENSDARG00000076509	polr2d	100	92.254	ENSFCAG00000027816	POLR2D	100	92.254	Felis_catus
ENSDARG00000076509	polr2d	100	92.254	ENSFALG00000003528	POLR2D	100	92.254	Ficedula_albicollis
ENSDARG00000076509	polr2d	100	90.845	ENSFDAG00000007217	POLR2D	100	90.845	Fukomys_damarensis
ENSDARG00000076509	polr2d	100	95.804	ENSGMOG00000001823	polr2d	99	95.804	Gadus_morhua
ENSDARG00000076509	polr2d	100	92.254	ENSGALG00000002057	POLR2D	100	92.254	Gallus_gallus
ENSDARG00000076509	polr2d	100	93.056	ENSGAFG00000016932	polr2d	71	93.056	Gambusia_affinis
ENSDARG00000076509	polr2d	100	91.667	ENSGACG00000004639	polr2d	100	91.667	Gasterosteus_aculeatus
ENSDARG00000076509	polr2d	100	92.958	ENSGAGG00000021308	POLR2D	100	92.958	Gopherus_agassizii
ENSDARG00000076509	polr2d	100	92.254	ENSGGOG00000004723	POLR2D	100	92.254	Gorilla_gorilla
ENSDARG00000076509	polr2d	100	91.549	ENSHGLG00000016570	Polr2d	100	91.549	Heterocephalus_glaber_female
ENSDARG00000076509	polr2d	100	91.549	ENSHGLG00100013785	Polr2d	100	91.549	Heterocephalus_glaber_male
ENSDARG00000076509	polr2d	100	92.254	ENSHCOG00000006425	polr2d	100	92.254	Hippocampus_comes
ENSDARG00000076509	polr2d	100	97.872	ENSIPUG00000011192	polr2d	100	97.872	Ictalurus_punctatus
ENSDARG00000076509	polr2d	100	90.141	ENSSTOG00000023329	POLR2D	100	90.141	Ictidomys_tridecemlineatus
ENSDARG00000076509	polr2d	83	90.598	ENSJJAG00000005723	-	94	90.598	Jaculus_jaculus
ENSDARG00000076509	polr2d	100	84.507	ENSJJAG00000000783	-	100	84.507	Jaculus_jaculus
ENSDARG00000076509	polr2d	100	92.254	ENSJJAG00000015053	-	100	92.254	Jaculus_jaculus
ENSDARG00000076509	polr2d	83	96.581	ENSKMAG00000010677	polr2d	66	96.581	Kryptolebias_marmoratus
ENSDARG00000076509	polr2d	100	95.070	ENSLACG00000017253	POLR2D	100	95.070	Latimeria_chalumnae
ENSDARG00000076509	polr2d	100	95.139	ENSLOCG00000009106	polr2d	100	95.139	Lepisosteus_oculatus
ENSDARG00000076509	polr2d	100	92.254	ENSLAFG00000001848	POLR2D	100	92.254	Loxodonta_africana
ENSDARG00000076509	polr2d	100	92.254	ENSMFAG00000031937	POLR2D	100	92.254	Macaca_fascicularis
ENSDARG00000076509	polr2d	100	92.254	ENSMMUG00000001989	POLR2D	100	92.254	Macaca_mulatta
ENSDARG00000076509	polr2d	100	92.254	ENSMNEG00000035505	POLR2D	100	92.254	Macaca_nemestrina
ENSDARG00000076509	polr2d	100	92.254	ENSMLEG00000035827	POLR2D	100	92.254	Mandrillus_leucophaeus
ENSDARG00000076509	polr2d	100	92.254	ENSMGAG00000001248	POLR2D	100	92.254	Meleagris_gallopavo
ENSDARG00000076509	polr2d	100	91.549	ENSMAUG00000014518	Polr2d	100	91.549	Mesocricetus_auratus
ENSDARG00000076509	polr2d	100	91.549	ENSMICG00000009931	POLR2D	100	91.549	Microcebus_murinus
ENSDARG00000076509	polr2d	100	89.437	ENSMOCG00000019367	Polr2d	100	89.437	Microtus_ochrogaster
ENSDARG00000076509	polr2d	100	77.465	ENSMODG00000025036	-	100	77.465	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	77.465	ENSMODG00000025035	-	100	77.465	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	76.761	ENSMODG00000025032	-	100	76.761	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	77.465	ENSMODG00000025033	-	100	77.465	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	78.169	ENSMODG00000025030	-	100	78.169	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	77.465	ENSMODG00000025031	-	100	77.465	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	77.465	ENSMODG00000025029	-	100	77.465	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	78.169	ENSMODG00000025028	-	100	78.169	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	78.169	ENSMODG00000025027	-	100	78.169	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	78.169	ENSMODG00000025026	-	100	78.169	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	77.465	ENSMODG00000025034	-	100	77.465	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	92.958	ENSMODG00000018653	-	100	92.958	Monodelphis_domestica
ENSDARG00000076509	polr2d	100	93.750	ENSMALG00000018266	polr2d	100	93.750	Monopterus_albus
ENSDARG00000076509	polr2d	100	92.254	MGP_CAROLIEiJ_G0022066	Polr2d	100	92.254	Mus_caroli
ENSDARG00000076509	polr2d	100	92.254	ENSMUSG00000024258	Polr2d	100	92.254	Mus_musculus
ENSDARG00000076509	polr2d	100	92.254	MGP_PahariEiJ_G0018800	Polr2d	100	92.254	Mus_pahari
ENSDARG00000076509	polr2d	100	92.254	MGP_SPRETEiJ_G0022977	Polr2d	100	92.254	Mus_spretus
ENSDARG00000076509	polr2d	100	92.254	ENSMPUG00000016685	POLR2D	100	92.254	Mustela_putorius_furo
ENSDARG00000076509	polr2d	84	96.610	ENSMLUG00000006862	POLR2D	100	96.610	Myotis_lucifugus
ENSDARG00000076509	polr2d	100	92.254	ENSNGAG00000014862	Polr2d	100	92.254	Nannospalax_galili
ENSDARG00000076509	polr2d	100	92.254	ENSNLEG00000027191	POLR2D	100	92.254	Nomascus_leucogenys
ENSDARG00000076509	polr2d	83	95.726	ENSOPRG00000005327	POLR2D	100	95.726	Ochotona_princeps
ENSDARG00000076509	polr2d	100	91.549	ENSODEG00000005262	POLR2D	100	91.549	Octodon_degus
ENSDARG00000076509	polr2d	100	93.056	ENSONIG00000017290	polr2d	100	93.056	Oreochromis_niloticus
ENSDARG00000076509	polr2d	84	97.458	ENSOANG00000013216	POLR2D	100	97.458	Ornithorhynchus_anatinus
ENSDARG00000076509	polr2d	100	86.014	ENSOCUG00000021449	-	100	86.014	Oryctolagus_cuniculus
ENSDARG00000076509	polr2d	100	90.141	ENSOCUG00000023403	-	100	90.141	Oryctolagus_cuniculus
ENSDARG00000076509	polr2d	100	91.667	ENSORLG00000005266	polr2d	100	91.667	Oryzias_latipes
ENSDARG00000076509	polr2d	100	92.361	ENSORLG00020006647	polr2d	100	92.361	Oryzias_latipes_hni
ENSDARG00000076509	polr2d	100	91.667	ENSORLG00015003222	polr2d	100	91.667	Oryzias_latipes_hsok
ENSDARG00000076509	polr2d	100	91.667	ENSOMEG00000018915	polr2d	100	91.667	Oryzias_melastigma
ENSDARG00000076509	polr2d	100	90.278	ENSOGAG00000017118	POLR2D	100	90.278	Otolemur_garnettii
ENSDARG00000076509	polr2d	100	92.254	ENSOARG00000015995	POLR2D	100	92.254	Ovis_aries
ENSDARG00000076509	polr2d	100	92.254	ENSPPRG00000020222	POLR2D	100	92.254	Panthera_pardus
ENSDARG00000076509	polr2d	100	92.254	ENSPTIG00000018618	POLR2D	100	92.254	Panthera_tigris_altaica
ENSDARG00000076509	polr2d	100	92.254	ENSPTRG00000012436	POLR2D	100	92.254	Pan_troglodytes
ENSDARG00000076509	polr2d	100	92.254	ENSPANG00000018602	POLR2D	100	92.254	Papio_anubis
ENSDARG00000076509	polr2d	100	94.444	ENSPKIG00000012166	polr2d	100	94.444	Paramormyrops_kingsleyae
ENSDARG00000076509	polr2d	84	97.458	ENSPSIG00000002873	POLR2D	100	97.458	Pelodiscus_sinensis
ENSDARG00000076509	polr2d	100	92.254	ENSPEMG00000018244	Polr2d	100	92.254	Peromyscus_maniculatus_bairdii
ENSDARG00000076509	polr2d	100	88.028	ENSPMAG00000005021	polr2d	99	88.028	Petromyzon_marinus
ENSDARG00000076509	polr2d	100	93.056	ENSPFOG00000008969	polr2d	100	93.056	Poecilia_formosa
ENSDARG00000076509	polr2d	100	93.056	ENSPLAG00000017210	polr2d	100	93.056	Poecilia_latipinna
ENSDARG00000076509	polr2d	100	93.056	ENSPMEG00000005160	polr2d	100	93.056	Poecilia_mexicana
ENSDARG00000076509	polr2d	74	98.077	ENSPREG00000021862	polr2d	100	98.077	Poecilia_reticulata
ENSDARG00000076509	polr2d	100	92.254	ENSPPYG00000012759	POLR2D	100	92.254	Pongo_abelii
ENSDARG00000076509	polr2d	100	92.254	ENSPCAG00000001396	POLR2D	100	92.254	Procavia_capensis
ENSDARG00000076509	polr2d	100	91.549	ENSPCOG00000022076	POLR2D	100	91.549	Propithecus_coquereli
ENSDARG00000076509	polr2d	100	92.254	ENSPVAG00000004002	POLR2D	100	92.254	Pteropus_vampyrus
ENSDARG00000076509	polr2d	99	95.714	ENSPNAG00000018246	polr2d	98	95.714	Pygocentrus_nattereri
ENSDARG00000076509	polr2d	100	92.254	ENSRNOG00000016231	Polr2d	100	92.254	Rattus_norvegicus
ENSDARG00000076509	polr2d	100	92.254	ENSRBIG00000039326	POLR2D	100	92.254	Rhinopithecus_bieti
ENSDARG00000076509	polr2d	100	92.254	ENSRROG00000023289	POLR2D	100	92.254	Rhinopithecus_roxellana
ENSDARG00000076509	polr2d	100	92.254	ENSSHAG00000014817	-	100	92.254	Sarcophilus_harrisii
ENSDARG00000076509	polr2d	100	95.833	ENSSFOG00015024204	polr2d	100	95.833	Scleropages_formosus
ENSDARG00000076509	polr2d	100	92.361	ENSSDUG00000006060	polr2d	100	92.361	Seriola_dumerili
ENSDARG00000076509	polr2d	95	96.269	ENSSLDG00000024485	polr2d	100	91.724	Seriola_lalandi_dorsalis
ENSDARG00000076509	polr2d	83	95.726	ENSSARG00000009037	POLR2D	100	95.726	Sorex_araneus
ENSDARG00000076509	polr2d	100	92.254	ENSSPUG00000014915	POLR2D	100	92.254	Sphenodon_punctatus
ENSDARG00000076509	polr2d	100	93.056	ENSSPAG00000013386	polr2d	100	93.056	Stegastes_partitus
ENSDARG00000076509	polr2d	100	92.254	ENSSSCG00000039230	POLR2D	100	92.254	Sus_scrofa
ENSDARG00000076509	polr2d	100	92.254	ENSTGUG00000005773	POLR2D	99	92.254	Taeniopygia_guttata
ENSDARG00000076509	polr2d	100	95.070	ENSTRUG00000004740	polr2d	100	95.070	Takifugu_rubripes
ENSDARG00000076509	polr2d	100	95.775	ENSTNIG00000011210	polr2d	100	95.775	Tetraodon_nigroviridis
ENSDARG00000076509	polr2d	83	96.581	ENSTBEG00000006081	POLR2D	100	96.581	Tupaia_belangeri
ENSDARG00000076509	polr2d	83	96.581	ENSTTRG00000010055	POLR2D	100	96.581	Tursiops_truncatus
ENSDARG00000076509	polr2d	91	96.124	ENSUAMG00000024374	POLR2D	98	96.124	Ursus_americanus
ENSDARG00000076509	polr2d	85	95.833	ENSUMAG00000008280	POLR2D	100	97.115	Ursus_maritimus
ENSDARG00000076509	polr2d	83	96.581	ENSVPAG00000007239	POLR2D	100	96.581	Vicugna_pacos
ENSDARG00000076509	polr2d	100	92.254	ENSVVUG00000008616	POLR2D	100	92.254	Vulpes_vulpes
ENSDARG00000076509	polr2d	100	90.141	ENSXETG00000002955	polr2d	100	90.141	Xenopus_tropicalis
ENSDARG00000076509	polr2d	74	98.077	ENSXCOG00000012668	polr2d	100	98.077	Xiphophorus_couchianus
ENSDARG00000076509	polr2d	74	98.077	ENSXMAG00000014031	polr2d	100	98.077	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	21873635.	IBA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003727	single-stranded RNA binding	21873635.	IBA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0006352	DNA-templated transcription, initiation	-	IEA	Process
GO:0006367	transcription initiation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0030880	RNA polymerase complex	-	IEA	Component
GO:0031369	translation initiation factor binding	21873635.	IBA	Function
GO:0031990	mRNA export from nucleus in response to heat stress	21873635.	IBA	Process
GO:0034402	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	21873635.	IBA	Process
GO:0044237	cellular metabolic process	-	IEA	Process
GO:0045948	positive regulation of translational initiation	21873635.	IBA	Process