EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000076526 (Gene tree)
Gene ID: 393950
Gene Symbol: gar1
Alias: nola1|zgc:56086
Full Name: GAR1 homolog%2C ribonucleoprotein
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 12580 bases
Position: chr14:43603993-43616572
Accession: ZDB-GENE-040426-893
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000101401	Gar1	PF04410.14	5.9e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000111189	-	2348	-	ENSDARP00000101401	225 (aa)	-	F1RAE2

Gene Model

Click here to download ENSDARG00000076526's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000076526's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000076526	gar1	50	89.381	ENSAMEG00000004605	GAR1	52	90.654	Ailuropoda_melanoleuca
ENSDARG00000076526	gar1	73	82.424	ENSATEG00000003733	gar1	50	96.262	Anabas_testudineus
ENSDARG00000076526	gar1	60	84.444	ENSACAG00000010031	GAR1	50	92.453	Anolis_carolinensis
ENSDARG00000076526	gar1	50	90.265	ENSBTAG00000000748	GAR1	51	91.589	Bos_taurus
ENSDARG00000076526	gar1	52	88.793	ENSCHIG00000016026	-	51	91.589	Capra_hircus
ENSDARG00000076526	gar1	65	78.082	ENSTSYG00000013668	-	50	91.589	Carlito_syrichta
ENSDARG00000076526	gar1	68	77.124	ENSCATG00000021854	GAR1	54	91.589	Cercocebus_atys
ENSDARG00000076526	gar1	67	78.808	ENSCVAG00000002103	gar1	51	95.327	Cyprinodon_variegatus
ENSDARG00000076526	gar1	52	89.655	ENSEASG00005004658	GAR1	50	92.523	Equus_asinus_asinus
ENSDARG00000076526	gar1	52	88.793	ENSECAG00000013624	GAR1	54	91.589	Equus_caballus
ENSDARG00000076526	gar1	50	90.265	ENSFCAG00000040791	-	51	91.589	Felis_catus
ENSDARG00000076526	gar1	88	47.297	ENSFCAG00000025841	-	50	57.944	Felis_catus
ENSDARG00000076526	gar1	52	88.889	ENSHGLG00000000493	GAR1	72	96.364	Heterocephalus_glaber_female
ENSDARG00000076526	gar1	53	85.714	ENSSTOG00000005577	GAR1	90	89.855	Ictidomys_tridecemlineatus
ENSDARG00000076526	gar1	61	73.913	ENSLACG00000003306	GAR1	64	87.736	Latimeria_chalumnae
ENSDARG00000076526	gar1	54	88.430	ENSMOCG00000001340	Gar1	70	96.364	Microtus_ochrogaster
ENSDARG00000076526	gar1	51	94.737	ENSMMOG00000004156	gar1	52	94.393	Mola_mola
ENSDARG00000076526	gar1	51	85.965	ENSMODG00000005897	GAR1	60	76.056	Monodelphis_domestica
ENSDARG00000076526	gar1	50	90.265	ENSMPUG00000008615	GAR1	51	91.589	Mustela_putorius_furo
ENSDARG00000076526	gar1	62	82.734	ENSNGAG00000008268	Gar1	90	89.855	Nannospalax_galili
ENSDARG00000076526	gar1	68	76.471	ENSNLEG00000016578	GAR1	50	91.589	Nomascus_leucogenys
ENSDARG00000076526	gar1	68	72.881	ENSNLEG00000034282	-	54	75.701	Nomascus_leucogenys
ENSDARG00000076526	gar1	67	77.333	ENSOCUG00000003901	GAR1	50	91.589	Oryctolagus_cuniculus
ENSDARG00000076526	gar1	54	88.525	ENSOGAG00000004693	GAR1	50	91.589	Otolemur_garnettii
ENSDARG00000076526	gar1	50	90.265	ENSOARG00000004910	GAR1	51	91.589	Ovis_aries
ENSDARG00000076526	gar1	67	81.333	ENSPPAG00000014081	GAR1	54	91.589	Pan_paniscus
ENSDARG00000076526	gar1	50	90.265	ENSPPRG00000023697	GAR1	51	91.589	Panthera_pardus
ENSDARG00000076526	gar1	50	90.265	ENSPTIG00000021565	GAR1	51	91.589	Panthera_tigris_altaica
ENSDARG00000076526	gar1	65	60.959	ENSPTRG00000049340	-	51	73.832	Pan_troglodytes
ENSDARG00000076526	gar1	68	77.124	ENSPTRG00000016364	GAR1	54	91.589	Pan_troglodytes
ENSDARG00000076526	gar1	73	81.212	ENSPMEG00000009320	gar1	51	94.393	Poecilia_mexicana
ENSDARG00000076526	gar1	67	78.000	ENSRBIG00000019547	GAR1	54	91.589	Rhinopithecus_bieti
ENSDARG00000076526	gar1	50	74.107	ENSRBIG00000042411	-	52	74.766	Rhinopithecus_bieti
ENSDARG00000076526	gar1	68	62.987	ENSRROG00000044348	-	51	74.766	Rhinopithecus_roxellana
ENSDARG00000076526	gar1	68	77.124	ENSRROG00000028454	GAR1	54	91.589	Rhinopithecus_roxellana
ENSDARG00000076526	gar1	50	90.265	ENSSBOG00000024785	GAR1	50	91.589	Saimiri_boliviensis_boliviensis
ENSDARG00000076526	gar1	73	81.818	ENSSLDG00000023264	gar1	50	96.262	Seriola_lalandi_dorsalis
ENSDARG00000076526	gar1	68	77.922	ENSSPUG00000008707	GAR1	69	86.992	Sphenodon_punctatus
ENSDARG00000076526	gar1	52	88.793	ENSSSCG00000009137	GAR1	53	91.589	Sus_scrofa
ENSDARG00000076526	gar1	50	90.265	ENSUMAG00000000776	GAR1	52	91.589	Ursus_maritimus
ENSDARG00000076526	gar1	50	90.265	ENSVVUG00000017612	GAR1	55	91.589	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000454	snoRNA guided rRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005697	telomerase holoenzyme complex	-	ISS	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0006364	rRNA processing	22299032.	IMP	Process
GO:0007004	telomere maintenance via telomerase	-	ISS	Process
GO:0031429	box H/ACA snoRNP complex	21873635.	IBA	Component
GO:0031429	box H/ACA snoRNP complex	-	IEA	Component
GO:0034513	box H/ACA snoRNA binding	21873635.	IBA	Function
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0060216	definitive hemopoiesis	22299032.	IGI	Process
GO:0060216	definitive hemopoiesis	22299032.	IMP	Process