EuRBPDB

Description

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000076815 (Gene tree)
Gene ID: 327515
Gene Symbol: eif3s10
Alias: wu:fi15c03|zgc:77263
Full Name: eukaryotic translation initiation factor 3%2C subunit 10 (theta)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 33634
Position: chr13: 19283936-19317569
Accession: ZDB-GENE-030131-5726
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000141744	-	744	-	-	- (aa)	-	-
ENSDART00000111462	-	4667	XM_005156611	ENSDARP00000102398	1267 (aa)	XP_005156668	Q6PCR7

Gene Model

Click here to download ENSDARG00000076815's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000076815's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000076815	eif3s10	63	38.802	WBGene00001209	egl-45	77	38.371	Caenorhabditis_elegans
ENSDARG00000076815	eif3s10	89	44.464	FBgn0037249	eIF3a	98	45.311	Drosophila_melanogaster
ENSDARG00000076815	eif3s10	92	76.322	ENSG00000107581	EIF3A	100	76.525	Homo_sapiens
ENSDARG00000076815	eif3s10	92	77.380	ENSMUSG00000024991	Eif3a	100	71.923	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001732	formation of cytoplasmic translation initiation complex	21873635.	IBA	Process
GO:0001732	formation of cytoplasmic translation initiation complex	-	ISS	Process
GO:0002188	translation reinitiation	21873635.	IBA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	-	IEA	Function
GO:0003743	translation initiation factor activity	-	ISS	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005852	eukaryotic translation initiation factor 3 complex	-	IEA	Component
GO:0005852	eukaryotic translation initiation factor 3 complex	-	ISS	Component
GO:0006412	translation	-	IEA	Process
GO:0006413	translational initiation	-	IEA	Process
GO:0016282	eukaryotic 43S preinitiation complex	-	IEA	Component
GO:0033290	eukaryotic 48S preinitiation complex	-	IEA	Component
GO:0043614	multi-eIF complex	21873635.	IBA	Component
GO:0071540	eukaryotic translation initiation factor 3 complex, eIF3e	21873635.	IBA	Component
GO:0071541	eukaryotic translation initiation factor 3 complex, eIF3m	21873635.	IBA	Component