EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000076847 (Gene tree)
Gene ID: 560874
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 79215 bases
Position: chr3:34258755-34337969
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000149733	Ago_hook	PF10427.9	2.5e-09	1	1
ENSDARP00000099922	Ago_hook	PF10427.9	1.3e-08	1	1
ENSDARP00000149934	Ago_hook	PF10427.9	1.8e-08	1	1
ENSDARP00000149934	RRM_1	PF00076.22	0.00016	1	1
ENSDARP00000099922	RRM_1	PF00076.22	0.00018	1	1
ENSDARP00000149733	RRM_1	PF00076.22	0.00019	1	1
ENSDARP00000125624	RRM_1	PF00076.22	0.0002	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000181485	-	5034	-	ENSDARP00000149733	1677 (aa)	-	A0A2R8RP64
ENSDART00000113726	-	5028	-	ENSDARP00000099922	1675 (aa)	-	E7F055
ENSDART00000151634	-	12420	XM_005164093	ENSDARP00000125624	1817 (aa)	XP_005164150	I3IRW6
ENSDART00000183255	-	4620	XM_009299600	ENSDARP00000149934	1539 (aa)	XP_009297875	A0A2R8RPF4

Gene Model

Click here to download ENSDARG00000076847's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000076847's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000076847	tnrc6c1	80	40.950	ENSDARG00000079688	tnrc6a	70	40.373
ENSDARG00000076847	tnrc6c1	99	55.054	ENSDARG00000103851	tnrc6c2	99	57.282

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000076847	tnrc6c1	99	54.484	ENSG00000078687	TNRC6C	97	59.292	Homo_sapiens
ENSDARG00000076847	tnrc6c1	97	76.082	ENSAPOG00000019749	tnrc6c1	93	76.136	Acanthochromis_polyacanthus
ENSDARG00000076847	tnrc6c1	96	54.860	ENSAMEG00000013756	TNRC6C	99	51.868	Ailuropoda_melanoleuca
ENSDARG00000076847	tnrc6c1	99	59.988	ENSACIG00000008075	tnrc6c1	99	57.805	Amphilophus_citrinellus
ENSDARG00000076847	tnrc6c1	99	61.818	ENSAOCG00000023968	tnrc6c1	93	75.709	Amphiprion_ocellaris
ENSDARG00000076847	tnrc6c1	99	61.665	ENSAPEG00000009020	tnrc6c1	93	75.709	Amphiprion_percula
ENSDARG00000076847	tnrc6c1	99	54.520	ENSAPLG00000005456	TNRC6C	97	51.662	Anas_platyrhynchos
ENSDARG00000076847	tnrc6c1	99	55.757	ENSACAG00000016198	TNRC6C	98	51.699	Anolis_carolinensis
ENSDARG00000076847	tnrc6c1	99	53.742	ENSANAG00000021554	TNRC6C	100	53.239	Aotus_nancymaae
ENSDARG00000076847	tnrc6c1	99	60.253	ENSACLG00000000424	tnrc6c1	99	58.814	Astatotilapia_calliptera
ENSDARG00000076847	tnrc6c1	84	58.457	ENSBTAG00000018658	TNRC6C	94	55.482	Bos_taurus
ENSDARG00000076847	tnrc6c1	99	53.616	ENSCJAG00000019431	TNRC6C	100	53.011	Callithrix_jacchus
ENSDARG00000076847	tnrc6c1	96	55.456	ENSCAFG00000005224	TNRC6C	99	64.367	Canis_familiaris
ENSDARG00000076847	tnrc6c1	96	55.134	ENSCAFG00020006661	TNRC6C	97	52.844	Canis_lupus_dingo
ENSDARG00000076847	tnrc6c1	96	54.844	ENSCHIG00000026004	TNRC6C	98	51.158	Capra_hircus
ENSDARG00000076847	tnrc6c1	96	55.609	ENSTSYG00000005403	TNRC6C	94	55.918	Carlito_syrichta
ENSDARG00000076847	tnrc6c1	81	55.564	ENSCAPG00000007307	TNRC6C	97	49.496	Cavia_aperea
ENSDARG00000076847	tnrc6c1	81	60.331	ENSCPOG00000000467	TNRC6C	100	53.277	Cavia_porcellus
ENSDARG00000076847	tnrc6c1	99	54.252	ENSCCAG00000030524	TNRC6C	100	54.190	Cebus_capucinus
ENSDARG00000076847	tnrc6c1	99	54.313	ENSCATG00000033135	TNRC6C	100	54.252	Cercocebus_atys
ENSDARG00000076847	tnrc6c1	99	53.523	ENSCLAG00000011139	TNRC6C	99	52.756	Chinchilla_lanigera
ENSDARG00000076847	tnrc6c1	99	54.226	ENSCSAG00000005167	TNRC6C	99	50.616	Chlorocebus_sabaeus
ENSDARG00000076847	tnrc6c1	68	69.565	ENSCHOG00000000088	TNRC6C	73	70.872	Choloepus_hoffmanni
ENSDARG00000076847	tnrc6c1	99	54.205	ENSCPBG00000027960	TNRC6C	99	53.497	Chrysemys_picta_bellii
ENSDARG00000076847	tnrc6c1	99	54.323	ENSCANG00000041771	TNRC6C	100	54.432	Colobus_angolensis_palliatus
ENSDARG00000076847	tnrc6c1	99	51.805	ENSCGRG00001022686	Tnrc6c	99	51.561	Cricetulus_griseus_chok1gshd
ENSDARG00000076847	tnrc6c1	99	52.231	ENSCGRG00000018041	Tnrc6c	99	51.769	Cricetulus_griseus_crigri
ENSDARG00000076847	tnrc6c1	100	57.981	ENSCSEG00000012744	tnrc6c1	95	72.955	Cynoglossus_semilaevis
ENSDARG00000076847	tnrc6c1	96	55.191	ENSDNOG00000003247	TNRC6C	99	50.296	Dasypus_novemcinctus
ENSDARG00000076847	tnrc6c1	96	52.861	ENSDORG00000004558	Tnrc6c	100	51.862	Dipodomys_ordii
ENSDARG00000076847	tnrc6c1	84	58.446	ENSETEG00000005527	TNRC6C	80	59.144	Echinops_telfairi
ENSDARG00000076847	tnrc6c1	96	54.404	ENSEASG00005004799	TNRC6C	94	55.306	Equus_asinus_asinus
ENSDARG00000076847	tnrc6c1	96	55.170	ENSECAG00000012486	TNRC6C	99	52.465	Equus_caballus
ENSDARG00000076847	tnrc6c1	92	59.982	ENSEEUG00000010008	TNRC6C	96	60.827	Erinaceus_europaeus
ENSDARG00000076847	tnrc6c1	96	54.303	ENSFCAG00000028358	TNRC6C	99	50.735	Felis_catus
ENSDARG00000076847	tnrc6c1	96	55.901	ENSFALG00000000848	TNRC6C	94	55.338	Ficedula_albicollis
ENSDARG00000076847	tnrc6c1	99	53.596	ENSFDAG00000010368	TNRC6C	99	52.769	Fukomys_damarensis
ENSDARG00000076847	tnrc6c1	100	59.790	ENSFHEG00000002936	tnrc6c1	93	72.841	Fundulus_heteroclitus
ENSDARG00000076847	tnrc6c1	99	55.385	ENSGALG00000001725	TNRC6C	99	52.883	Gallus_gallus
ENSDARG00000076847	tnrc6c1	100	59.508	ENSGAFG00000019019	tnrc6c1	94	69.348	Gambusia_affinis
ENSDARG00000076847	tnrc6c1	100	60.031	ENSGACG00000012320	tnrc6c1	98	59.139	Gasterosteus_aculeatus
ENSDARG00000076847	tnrc6c1	99	55.268	ENSGAGG00000022043	TNRC6C	99	53.683	Gopherus_agassizii
ENSDARG00000076847	tnrc6c1	99	54.313	ENSGGOG00000011304	TNRC6C	100	54.221	Gorilla_gorilla
ENSDARG00000076847	tnrc6c1	96	74.347	ENSHBUG00000010846	tnrc6c1	94	74.461	Haplochromis_burtoni
ENSDARG00000076847	tnrc6c1	99	53.212	ENSHGLG00000004809	TNRC6C	99	52.187	Heterocephalus_glaber_female
ENSDARG00000076847	tnrc6c1	99	52.838	ENSHGLG00100012597	TNRC6C	99	51.857	Heterocephalus_glaber_male
ENSDARG00000076847	tnrc6c1	99	75.927	ENSIPUG00000000818	tnrc6c1	99	75.931	Ictalurus_punctatus
ENSDARG00000076847	tnrc6c1	84	59.065	ENSSTOG00000009101	TNRC6C	99	53.545	Ictidomys_tridecemlineatus
ENSDARG00000076847	tnrc6c1	84	58.222	ENSJJAG00000017055	Tnrc6c	99	51.805	Jaculus_jaculus
ENSDARG00000076847	tnrc6c1	99	59.755	ENSKMAG00000021023	tnrc6c1	100	59.543	Kryptolebias_marmoratus
ENSDARG00000076847	tnrc6c1	99	51.308	ENSLACG00000015283	TNRC6C	99	50.572	Latimeria_chalumnae
ENSDARG00000076847	tnrc6c1	96	81.787	ENSLOCG00000013377	tnrc6c1	93	81.443	Lepisosteus_oculatus
ENSDARG00000076847	tnrc6c1	99	52.724	ENSLAFG00000011122	TNRC6C	99	51.268	Loxodonta_africana
ENSDARG00000076847	tnrc6c1	99	54.313	ENSMFAG00000043943	TNRC6C	100	54.252	Macaca_fascicularis
ENSDARG00000076847	tnrc6c1	99	54.339	ENSMMUG00000011924	TNRC6C	100	53.492	Macaca_mulatta
ENSDARG00000076847	tnrc6c1	99	54.094	ENSMNEG00000030405	TNRC6C	100	53.492	Macaca_nemestrina
ENSDARG00000076847	tnrc6c1	99	54.313	ENSMLEG00000033436	TNRC6C	100	54.252	Mandrillus_leucophaeus
ENSDARG00000076847	tnrc6c1	96	73.576	ENSMAMG00000023613	tnrc6c1	93	73.750	Mastacembelus_armatus
ENSDARG00000076847	tnrc6c1	96	74.347	ENSMZEG00005010920	tnrc6c1	91	74.461	Maylandia_zebra
ENSDARG00000076847	tnrc6c1	90	74.340	ENSMGAG00000003906	TNRC6C	90	73.180	Meleagris_gallopavo
ENSDARG00000076847	tnrc6c1	96	54.513	ENSMAUG00000021618	Tnrc6c	94	54.403	Mesocricetus_auratus
ENSDARG00000076847	tnrc6c1	99	54.016	ENSMICG00000003952	TNRC6C	100	54.628	Microcebus_murinus
ENSDARG00000076847	tnrc6c1	99	51.850	ENSMOCG00000015879	Tnrc6c	100	51.830	Microtus_ochrogaster
ENSDARG00000076847	tnrc6c1	99	60.520	ENSMMOG00000005203	tnrc6c1	99	61.925	Mola_mola
ENSDARG00000076847	tnrc6c1	96	56.067	ENSMODG00000001785	TNRC6C	99	51.978	Monodelphis_domestica
ENSDARG00000076847	tnrc6c1	99	52.787	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	52.026	Mus_caroli
ENSDARG00000076847	tnrc6c1	99	52.617	ENSMUSG00000025571	Tnrc6c	100	51.947	Mus_musculus
ENSDARG00000076847	tnrc6c1	99	52.988	MGP_PahariEiJ_G0018593	Tnrc6c	99	52.834	Mus_pahari
ENSDARG00000076847	tnrc6c1	99	52.446	MGP_SPRETEiJ_G0018309	Tnrc6c	100	51.929	Mus_spretus
ENSDARG00000076847	tnrc6c1	96	54.638	ENSMPUG00000013348	TNRC6C	97	50.321	Mustela_putorius_furo
ENSDARG00000076847	tnrc6c1	99	49.196	ENSMLUG00000014431	TNRC6C	96	50.471	Myotis_lucifugus
ENSDARG00000076847	tnrc6c1	99	51.900	ENSNGAG00000012203	Tnrc6c	100	52.324	Nannospalax_galili
ENSDARG00000076847	tnrc6c1	99	61.145	ENSNBRG00000005344	tnrc6c1	99	61.382	Neolamprologus_brichardi
ENSDARG00000076847	tnrc6c1	99	53.508	ENSNLEG00000000047	TNRC6C	97	50.026	Nomascus_leucogenys
ENSDARG00000076847	tnrc6c1	93	62.761	ENSMEUG00000005104	TNRC6C	94	69.581	Notamacropus_eugenii
ENSDARG00000076847	tnrc6c1	99	53.193	ENSODEG00000012499	TNRC6C	94	55.340	Octodon_degus
ENSDARG00000076847	tnrc6c1	99	60.749	ENSONIG00000002210	tnrc6c1	99	61.984	Oreochromis_niloticus
ENSDARG00000076847	tnrc6c1	72	80.000	ENSOANG00000009758	-	72	57.592	Ornithorhynchus_anatinus
ENSDARG00000076847	tnrc6c1	57	62.957	ENSOCUG00000006122	TNRC6C	96	63.030	Oryctolagus_cuniculus
ENSDARG00000076847	tnrc6c1	99	57.252	ENSORLG00000009837	tnrc6c1	100	78.755	Oryzias_latipes
ENSDARG00000076847	tnrc6c1	99	58.792	ENSORLG00020016510	tnrc6c1	94	73.273	Oryzias_latipes_hni
ENSDARG00000076847	tnrc6c1	76	53.338	ENSORLG00015000171	tnrc6c1	90	69.173	Oryzias_latipes_hsok
ENSDARG00000076847	tnrc6c1	94	61.294	ENSOMEG00000000357	tnrc6c1	93	74.405	Oryzias_melastigma
ENSDARG00000076847	tnrc6c1	84	58.375	ENSOGAG00000007197	TNRC6C	100	53.265	Otolemur_garnettii
ENSDARG00000076847	tnrc6c1	91	52.542	ENSOARG00000006041	TNRC6C	97	48.322	Ovis_aries
ENSDARG00000076847	tnrc6c1	99	54.514	ENSPPAG00000027160	TNRC6C	100	54.478	Pan_paniscus
ENSDARG00000076847	tnrc6c1	96	54.421	ENSPPRG00000018881	TNRC6C	99	50.637	Panthera_pardus
ENSDARG00000076847	tnrc6c1	84	62.752	ENSPTIG00000008791	TNRC6C	86	60.642	Panthera_tigris_altaica
ENSDARG00000076847	tnrc6c1	99	54.571	ENSPTRG00000009699	TNRC6C	100	54.535	Pan_troglodytes
ENSDARG00000076847	tnrc6c1	99	54.094	ENSPANG00000019994	TNRC6C	100	53.439	Papio_anubis
ENSDARG00000076847	tnrc6c1	99	64.774	ENSPKIG00000005428	tnrc6c1	100	65.281	Paramormyrops_kingsleyae
ENSDARG00000076847	tnrc6c1	96	55.822	ENSPSIG00000018069	TNRC6C	99	53.624	Pelodiscus_sinensis
ENSDARG00000076847	tnrc6c1	84	69.313	ENSPMGG00000022911	tnrc6c1	95	77.551	Periophthalmus_magnuspinnatus
ENSDARG00000076847	tnrc6c1	99	52.771	ENSPEMG00000009785	Tnrc6c	99	51.553	Peromyscus_maniculatus_bairdii
ENSDARG00000076847	tnrc6c1	100	60.526	ENSPFOG00000012560	tnrc6c1	99	63.525	Poecilia_formosa
ENSDARG00000076847	tnrc6c1	99	60.098	ENSPLAG00000021055	tnrc6c1	100	60.671	Poecilia_latipinna
ENSDARG00000076847	tnrc6c1	99	54.484	ENSPPYG00000008679	TNRC6C	97	51.207	Pongo_abelii
ENSDARG00000076847	tnrc6c1	81	70.175	ENSPCAG00000012510	TNRC6C	89	71.202	Procavia_capensis
ENSDARG00000076847	tnrc6c1	96	55.595	ENSPCOG00000021451	TNRC6C	94	56.341	Propithecus_coquereli
ENSDARG00000076847	tnrc6c1	76	72.269	ENSPVAG00000002008	TNRC6C	95	71.429	Pteropus_vampyrus
ENSDARG00000076847	tnrc6c1	99	60.693	ENSPNYG00000014477	tnrc6c1	94	74.041	Pundamilia_nyererei
ENSDARG00000076847	tnrc6c1	81	60.360	ENSRNOG00000022395	Tnrc6c	98	52.644	Rattus_norvegicus
ENSDARG00000076847	tnrc6c1	99	54.370	ENSRBIG00000027777	TNRC6C	100	54.365	Rhinopithecus_bieti
ENSDARG00000076847	tnrc6c1	99	54.370	ENSRROG00000042912	TNRC6C	100	54.308	Rhinopithecus_roxellana
ENSDARG00000076847	tnrc6c1	99	53.916	ENSSBOG00000023981	TNRC6C	100	53.912	Saimiri_boliviensis_boliviensis
ENSDARG00000076847	tnrc6c1	59	70.732	ENSSHAG00000018330	-	100	70.732	Sarcophilus_harrisii
ENSDARG00000076847	tnrc6c1	91	61.670	ENSSFOG00015004735	-	100	69.211	Scleropages_formosus
ENSDARG00000076847	tnrc6c1	98	67.318	ENSSFOG00015006475	tnrc6c1	92	79.200	Scleropages_formosus
ENSDARG00000076847	tnrc6c1	100	59.344	ENSSMAG00000012761	tnrc6c1	94	72.665	Scophthalmus_maximus
ENSDARG00000076847	tnrc6c1	99	61.251	ENSSDUG00000002366	tnrc6c1	92	74.344	Seriola_dumerili
ENSDARG00000076847	tnrc6c1	99	59.187	ENSSLDG00000025613	tnrc6c1	94	74.116	Seriola_lalandi_dorsalis
ENSDARG00000076847	tnrc6c1	71	71.667	ENSSARG00000006816	TNRC6C	91	70.833	Sorex_araneus
ENSDARG00000076847	tnrc6c1	78	80.556	ENSSPUG00000007341	TNRC6C	93	67.308	Sphenodon_punctatus
ENSDARG00000076847	tnrc6c1	98	61.862	ENSSPAG00000014977	tnrc6c1	92	75.291	Stegastes_partitus
ENSDARG00000076847	tnrc6c1	93	60.906	ENSSSCG00000034373	TNRC6C	100	70.365	Sus_scrofa
ENSDARG00000076847	tnrc6c1	99	54.452	ENSTGUG00000007733	TNRC6C	99	53.537	Taeniopygia_guttata
ENSDARG00000076847	tnrc6c1	99	60.593	ENSTRUG00000011685	tnrc6c1	91	73.394	Takifugu_rubripes
ENSDARG00000076847	tnrc6c1	100	58.619	ENSTNIG00000005273	tnrc6c1	100	69.890	Tetraodon_nigroviridis
ENSDARG00000076847	tnrc6c1	67	59.333	ENSTBEG00000005046	TNRC6C	91	67.293	Tupaia_belangeri
ENSDARG00000076847	tnrc6c1	96	54.475	ENSTTRG00000010828	TNRC6C	99	53.446	Tursiops_truncatus
ENSDARG00000076847	tnrc6c1	96	53.493	ENSUMAG00000013614	TNRC6C	98	51.116	Ursus_maritimus
ENSDARG00000076847	tnrc6c1	57	53.297	ENSVPAG00000006765	-	99	55.519	Vicugna_pacos
ENSDARG00000076847	tnrc6c1	96	54.671	ENSVVUG00000015268	TNRC6C	94	55.441	Vulpes_vulpes
ENSDARG00000076847	tnrc6c1	96	53.800	ENSXETG00000019470	tnrc6c	94	53.966	Xenopus_tropicalis
ENSDARG00000076847	tnrc6c1	100	59.730	ENSXMAG00000025971	tnrc6c1	99	61.237	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0035068	micro-ribonucleoprotein complex	21873635.	IBA	Component
GO:0035195	gene silencing by miRNA	21873635.	IBA	Process
GO:0035278	miRNA mediated inhibition of translation	-	IEA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process