EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000077089 (Gene tree)
Gene ID: 572540
Gene Symbol: blm
Alias: -
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 24901 bases
Position: chr18:26428829-26453729
Accession: ZDB-GENE-070702-5
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000147418	HRDC	PF00570.23	1e-13	1	1
ENSDARP00000098087	HRDC	PF00570.23	1e-13	1	1
ENSDARP00000153051	HRDC	PF00570.23	1e-13	1	1
ENSDARP00000113634	BDHCT	PF08072.11	2.4e-20	1	1
ENSDARP00000147418	BDHCT	PF08072.11	4.2e-20	1	1
ENSDARP00000098087	BDHCT	PF08072.11	4.2e-20	1	1
ENSDARP00000153051	BDHCT	PF08072.11	4.3e-20	1	1
ENSDARP00000113634	DEAD	PF00270.29	2.4e-18	1	1
ENSDARP00000147418	DEAD	PF00270.29	3.9e-18	1	1
ENSDARP00000098087	DEAD	PF00270.29	3.9e-18	1	1
ENSDARP00000153051	DEAD	PF00270.29	4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000110746	-	4823	XM_017352049	ENSDARP00000098087	1420 (aa)	XP_017207538	E7EZY7
ENSDART00000144783	-	412	-	-	- (aa)	-	-
ENSDART00000193226	-	5158	XM_017352050	ENSDARP00000153051	1439 (aa)	XP_017207539	A0A2R8RUE4
ENSDART00000142686	-	2795	-	ENSDARP00000113634	852 (aa)	-	E9QIQ5
ENSDART00000190779	-	5068	-	ENSDARP00000147418	1409 (aa)	-	A0A2R8Q3W6

Gene Model

Click here to download ENSDARG00000077089's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03440	Homologous recombination	KEGG
dre03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000077089's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000077089	blm	56	65.740	ENSG00000197299	BLM	50	74.385	Homo_sapiens
ENSDARG00000077089	blm	100	57.133	ENSAPOG00000017966	blm	99	57.559	Acanthochromis_polyacanthus
ENSDARG00000077089	blm	83	64.943	ENSAMEG00000013843	BLM	84	64.602	Ailuropoda_melanoleuca
ENSDARG00000077089	blm	100	57.375	ENSACIG00000023762	blm	99	56.563	Amphilophus_citrinellus
ENSDARG00000077089	blm	100	58.078	ENSAOCG00000003318	blm	99	57.880	Amphiprion_ocellaris
ENSDARG00000077089	blm	100	58.497	ENSAPEG00000018105	blm	99	58.322	Amphiprion_percula
ENSDARG00000077089	blm	100	59.516	ENSATEG00000006421	blm	100	58.093	Anabas_testudineus
ENSDARG00000077089	blm	83	53.110	ENSAPLG00000006878	BLM	72	63.014	Anas_platyrhynchos
ENSDARG00000077089	blm	76	54.193	ENSACAG00000014275	BLM	84	65.452	Anolis_carolinensis
ENSDARG00000077089	blm	60	66.372	ENSANAG00000038415	BLM	82	73.975	Aotus_nancymaae
ENSDARG00000077089	blm	100	58.611	ENSACLG00000020354	blm	99	58.367	Astatotilapia_calliptera
ENSDARG00000077089	blm	100	66.875	ENSAMXG00000016970	blm	99	66.943	Astyanax_mexicanus
ENSDARG00000077089	blm	53	68.928	ENSBTAG00000020301	BLM	99	50.794	Bos_taurus
ENSDARG00000077089	blm	56	65.992	ENSCJAG00000009803	BLM	50	73.975	Callithrix_jacchus
ENSDARG00000077089	blm	83	64.475	ENSCAFG00000012385	BLM	84	64.349	Canis_familiaris
ENSDARG00000077089	blm	76	73.566	ENSCAFG00020016111	BLM	88	73.566	Canis_lupus_dingo
ENSDARG00000077089	blm	83	65.201	ENSCHIG00000010329	BLM	84	65.278	Capra_hircus
ENSDARG00000077089	blm	99	46.366	ENSTSYG00000012368	BLM	99	46.359	Carlito_syrichta
ENSDARG00000077089	blm	64	71.739	ENSCAPG00000017976	BLM	73	71.739	Cavia_aperea
ENSDARG00000077089	blm	99	46.911	ENSCPOG00000001761	BLM	99	46.780	Cavia_porcellus
ENSDARG00000077089	blm	83	66.498	ENSCCAG00000023069	BLM	82	74.180	Cebus_capucinus
ENSDARG00000077089	blm	53	74.180	ENSCATG00000040609	BLM	82	74.180	Cercocebus_atys
ENSDARG00000077089	blm	58	63.385	ENSCLAG00000012111	BLM	55	65.487	Chinchilla_lanigera
ENSDARG00000077089	blm	83	65.657	ENSCSAG00000017040	BLM	84	65.613	Chlorocebus_sabaeus
ENSDARG00000077089	blm	57	60.185	ENSCHOG00000006255	BLM	92	51.844	Choloepus_hoffmanni
ENSDARG00000077089	blm	91	50.225	ENSCPBG00000025000	BLM	90	63.011	Chrysemys_picta_bellii
ENSDARG00000077089	blm	83	65.316	ENSCGRG00001024897	Blm	84	64.646	Cricetulus_griseus_chok1gshd
ENSDARG00000077089	blm	95	56.550	ENSCSEG00000013483	blm	99	55.782	Cynoglossus_semilaevis
ENSDARG00000077089	blm	100	45.894	ENSCVAG00000017583	blm	86	74.733	Cyprinodon_variegatus
ENSDARG00000077089	blm	60	64.187	ENSDNOG00000010159	BLM	84	64.187	Dasypus_novemcinctus
ENSDARG00000077089	blm	58	63.876	ENSDORG00000011033	Blm	99	54.113	Dipodomys_ordii
ENSDARG00000077089	blm	57	51.724	ENSETEG00000015019	BLM	63	51.012	Echinops_telfairi
ENSDARG00000077089	blm	56	61.568	ENSEASG00005006727	BLM	99	45.114	Equus_asinus_asinus
ENSDARG00000077089	blm	56	65.360	ENSECAG00000011405	BLM	99	46.796	Equus_caballus
ENSDARG00000077089	blm	81	64.106	ENSEEUG00000001434	BLM	73	63.476	Erinaceus_europaeus
ENSDARG00000077089	blm	100	59.227	ENSELUG00000019098	blm	99	59.331	Esox_lucius
ENSDARG00000077089	blm	72	79.512	ENSFCAG00000006087	BLM	83	73.361	Felis_catus
ENSDARG00000077089	blm	78	79.518	ENSFDAG00000012658	BLM	83	79.518	Fukomys_damarensis
ENSDARG00000077089	blm	100	56.305	ENSFHEG00000002553	blm	99	56.814	Fundulus_heteroclitus
ENSDARG00000077089	blm	99	54.502	ENSGMOG00000016431	blm	99	64.686	Gadus_morhua
ENSDARG00000077089	blm	84	52.615	ENSGALG00000008256	BLM	87	66.421	Gallus_gallus
ENSDARG00000077089	blm	100	57.073	ENSGAFG00000001117	blm	99	57.113	Gambusia_affinis
ENSDARG00000077089	blm	100	55.381	ENSGACG00000010863	blm	100	82.197	Gasterosteus_aculeatus
ENSDARG00000077089	blm	65	58.635	ENSGAGG00000005383	BLM	82	74.919	Gopherus_agassizii
ENSDARG00000077089	blm	83	65.613	ENSGGOG00000007710	BLM	82	74.180	Gorilla_gorilla
ENSDARG00000077089	blm	100	57.793	ENSHBUG00000015943	blm	99	58.018	Haplochromis_burtoni
ENSDARG00000077089	blm	60	64.232	ENSHGLG00000013231	BLM	83	64.610	Heterocephalus_glaber_female
ENSDARG00000077089	blm	64	70.161	ENSHCOG00000011455	blm	90	68.531	Hippocampus_comes
ENSDARG00000077089	blm	70	73.276	ENSIPUG00000000529	blm	86	72.629	Ictalurus_punctatus
ENSDARG00000077089	blm	63	65.443	ENSSTOG00000005000	BLM	84	64.810	Ictidomys_tridecemlineatus
ENSDARG00000077089	blm	56	59.241	ENSJJAG00000016322	Blm	73	58.987	Jaculus_jaculus
ENSDARG00000077089	blm	100	57.887	ENSKMAG00000016608	blm	99	57.727	Kryptolebias_marmoratus
ENSDARG00000077089	blm	50	79.315	ENSLBEG00000018729	blm	88	75.328	Labrus_bergylta
ENSDARG00000077089	blm	86	64.781	ENSLACG00000006490	BLM	97	63.791	Latimeria_chalumnae
ENSDARG00000077089	blm	100	54.521	ENSLOCG00000014302	blm	100	54.545	Lepisosteus_oculatus
ENSDARG00000077089	blm	83	65.866	ENSMFAG00000042982	BLM	82	74.180	Macaca_fascicularis
ENSDARG00000077089	blm	53	74.180	ENSMMUG00000019526	BLM	82	74.180	Macaca_mulatta
ENSDARG00000077089	blm	56	65.613	ENSMNEG00000031251	BLM	75	77.049	Macaca_nemestrina
ENSDARG00000077089	blm	62	61.772	ENSMLEG00000032934	BLM	84	61.772	Mandrillus_leucophaeus
ENSDARG00000077089	blm	99	58.787	ENSMAMG00000008726	blm	99	58.548	Mastacembelus_armatus
ENSDARG00000077089	blm	100	58.430	ENSMZEG00005022323	blm	99	58.060	Maylandia_zebra
ENSDARG00000077089	blm	72	79.024	ENSMAUG00000008953	Blm	84	64.943	Mesocricetus_auratus
ENSDARG00000077089	blm	56	65.360	ENSMICG00000034442	BLM	99	46.765	Microcebus_murinus
ENSDARG00000077089	blm	56	66.498	ENSMOCG00000016367	Blm	55	65.613	Microtus_ochrogaster
ENSDARG00000077089	blm	60	73.801	ENSMMOG00000006959	blm	62	73.099	Mola_mola
ENSDARG00000077089	blm	56	65.743	ENSMODG00000019449	BLM	100	45.533	Monodelphis_domestica
ENSDARG00000077089	blm	100	57.653	ENSMALG00000007323	blm	99	57.674	Monopterus_albus
ENSDARG00000077089	blm	72	79.024	MGP_CAROLIEiJ_G0029907	Blm	84	65.443	Mus_caroli
ENSDARG00000077089	blm	72	79.512	ENSMUSG00000030528	Blm	89	61.130	Mus_musculus
ENSDARG00000077089	blm	72	79.512	MGP_PahariEiJ_G0013129	Blm	84	65.823	Mus_pahari
ENSDARG00000077089	blm	74	79.512	MGP_SPRETEiJ_G0031009	Blm	99	46.312	Mus_spretus
ENSDARG00000077089	blm	83	45.814	ENSMPUG00000015657	BLM	99	46.565	Mustela_putorius_furo
ENSDARG00000077089	blm	83	64.070	ENSMLUG00000014697	BLM	84	63.476	Myotis_lucifugus
ENSDARG00000077089	blm	58	63.420	ENSNGAG00000001275	Blm	99	46.662	Nannospalax_galili
ENSDARG00000077089	blm	100	58.221	ENSNBRG00000019702	blm	99	57.859	Neolamprologus_brichardi
ENSDARG00000077089	blm	63	63.085	ENSNLEG00000012087	BLM	82	70.287	Nomascus_leucogenys
ENSDARG00000077089	blm	69	79.641	ENSMEUG00000007253	BLM	90	56.089	Notamacropus_eugenii
ENSDARG00000077089	blm	52	64.993	ENSOPRG00000011667	BLM	81	64.586	Ochotona_princeps
ENSDARG00000077089	blm	56	61.587	ENSODEG00000015373	BLM	75	61.083	Octodon_degus
ENSDARG00000077089	blm	91	69.838	ENSONIG00000015193	blm	99	56.184	Oreochromis_niloticus
ENSDARG00000077089	blm	55	65.605	ENSOANG00000009316	-	100	65.464	Ornithorhynchus_anatinus
ENSDARG00000077089	blm	73	79.412	ENSOCUG00000013969	BLM	87	64.061	Oryctolagus_cuniculus
ENSDARG00000077089	blm	100	58.203	ENSORLG00000008110	blm	99	58.214	Oryzias_latipes
ENSDARG00000077089	blm	100	58.143	ENSORLG00020004812	blm	99	58.424	Oryzias_latipes_hni
ENSDARG00000077089	blm	100	58.435	ENSORLG00015018640	blm	87	81.250	Oryzias_latipes_hsok
ENSDARG00000077089	blm	100	59.386	ENSOMEG00000023545	blm	99	58.897	Oryzias_melastigma
ENSDARG00000077089	blm	56	65.530	ENSPPAG00000032173	BLM	50	74.180	Pan_paniscus
ENSDARG00000077089	blm	73	79.024	ENSPPRG00000002471	BLM	83	73.361	Panthera_pardus
ENSDARG00000077089	blm	56	65.570	ENSPTRG00000007460	BLM	50	73.922	Pan_troglodytes
ENSDARG00000077089	blm	53	74.180	ENSPANG00000018572	BLM	82	74.180	Papio_anubis
ENSDARG00000077089	blm	100	57.221	ENSPKIG00000008954	blm	99	57.172	Paramormyrops_kingsleyae
ENSDARG00000077089	blm	58	78.125	ENSPMGG00000006629	blm	87	78.125	Periophthalmus_magnuspinnatus
ENSDARG00000077089	blm	72	78.537	ENSPEMG00000017348	Blm	89	61.246	Peromyscus_maniculatus_bairdii
ENSDARG00000077089	blm	100	45.765	ENSPCIG00000006609	BLM	59	61.105	Phascolarctos_cinereus
ENSDARG00000077089	blm	88	71.875	ENSPFOG00000005059	blm	99	56.966	Poecilia_formosa
ENSDARG00000077089	blm	79	77.186	ENSPLAG00000017344	blm	99	57.320	Poecilia_latipinna
ENSDARG00000077089	blm	100	55.081	ENSPMEG00000000321	blm	99	56.886	Poecilia_mexicana
ENSDARG00000077089	blm	100	56.777	ENSPREG00000007715	blm	99	57.429	Poecilia_reticulata
ENSDARG00000077089	blm	66	64.349	ENSPPYG00000006784	BLM	88	64.349	Pongo_abelii
ENSDARG00000077089	blm	66	61.207	ENSPCAG00000008960	BLM	69	57.631	Procavia_capensis
ENSDARG00000077089	blm	81	46.999	ENSPCOG00000000439	BLM	99	41.667	Propithecus_coquereli
ENSDARG00000077089	blm	70	76.721	ENSPVAG00000011642	BLM	69	76.721	Pteropus_vampyrus
ENSDARG00000077089	blm	92	71.552	ENSPNYG00000010956	blm	95	70.537	Pundamilia_nyererei
ENSDARG00000077089	blm	100	66.157	ENSPNAG00000011714	blm	99	66.412	Pygocentrus_nattereri
ENSDARG00000077089	blm	73	79.024	ENSRNOG00000011213	Blm	77	65.443	Rattus_norvegicus
ENSDARG00000077089	blm	61	65.195	ENSRBIG00000029656	BLM	76	76.547	Rhinopithecus_bieti
ENSDARG00000077089	blm	56	65.322	ENSRROG00000037871	BLM	82	73.566	Rhinopithecus_roxellana
ENSDARG00000077089	blm	73	80.488	ENSSHAG00000007988	BLM	84	64.268	Sarcophilus_harrisii
ENSDARG00000077089	blm	63	76.923	ENSSFOG00015015462	blm	71	76.923	Scleropages_formosus
ENSDARG00000077089	blm	100	56.747	ENSSMAG00000001120	blm	99	56.585	Scophthalmus_maximus
ENSDARG00000077089	blm	100	58.690	ENSSDUG00000010955	blm	99	58.402	Seriola_dumerili
ENSDARG00000077089	blm	100	58.884	ENSSLDG00000000634	blm	99	58.087	Seriola_lalandi_dorsalis
ENSDARG00000077089	blm	56	59.395	ENSSARG00000006398	BLM	59	58.965	Sorex_araneus
ENSDARG00000077089	blm	76	54.479	ENSSPUG00000000013	BLM	99	50.660	Sphenodon_punctatus
ENSDARG00000077089	blm	89	76.923	ENSSPAG00000013999	blm	99	57.422	Stegastes_partitus
ENSDARG00000077089	blm	80	65.625	ENSSSCG00000001816	BLM	83	64.946	Sus_scrofa
ENSDARG00000077089	blm	57	57.664	ENSTGUG00000009959	-	71	57.799	Taeniopygia_guttata
ENSDARG00000077089	blm	84	67.925	ENSTRUG00000019860	blm	89	71.179	Takifugu_rubripes
ENSDARG00000077089	blm	99	55.103	ENSTNIG00000019246	blm	99	54.696	Tetraodon_nigroviridis
ENSDARG00000077089	blm	56	65.783	ENSTTRG00000016386	BLM	99	44.950	Tursiops_truncatus
ENSDARG00000077089	blm	56	73.361	ENSUMAG00000009105	BLM	96	67.627	Ursus_maritimus
ENSDARG00000077089	blm	59	62.421	ENSVPAG00000000085	BLM	84	61.791	Vicugna_pacos
ENSDARG00000077089	blm	66	80.795	ENSVVUG00000006402	BLM	83	63.501	Vulpes_vulpes
ENSDARG00000077089	blm	89	63.017	ENSXETG00000007847	blm	83	67.000	Xenopus_tropicalis
ENSDARG00000077089	blm	100	55.222	ENSXCOG00000020227	blm	99	55.457	Xiphophorus_couchianus
ENSDARG00000077089	blm	100	57.272	ENSXMAG00000002951	blm	99	57.203	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	21873635.	IBA	Process
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000228	nuclear chromosome	21873635.	IBA	Component
GO:0000400	four-way junction DNA binding	21873635.	IBA	Function
GO:0000403	Y-form DNA binding	21873635.	IBA	Function
GO:0000405	bubble DNA binding	21873635.	IBA	Function
GO:0000712	resolution of meiotic recombination intermediates	21873635.	IBA	Process
GO:0000724	double-strand break repair via homologous recombination	21873635.	IBA	Process
GO:0000731	DNA synthesis involved in DNA repair	21873635.	IBA	Process
GO:0000732	strand displacement	21873635.	IBA	Process
GO:0000781	chromosome, telomeric region	21873635.	IBA	Component
GO:0000800	lateral element	21873635.	IBA	Component
GO:0002039	p53 binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0005524	ATP binding	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005657	replication fork	21873635.	IBA	Component
GO:0005694	chromosome	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006281	DNA repair	21873635.	IBA	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006310	DNA recombination	21873635.	IBA	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0007095	mitotic G2 DNA damage checkpoint	21873635.	IBA	Process
GO:0008026	ATP-dependent helicase activity	-	IEA	Function
GO:0008270	zinc ion binding	21873635.	IBA	Function
GO:0009378	four-way junction helicase activity	21873635.	IBA	Function
GO:0010165	response to X-ray	21873635.	IBA	Process
GO:0010705	meiotic DNA double-strand break processing involved in reciprocal meiotic recombination	21873635.	IBA	Process
GO:0016363	nuclear matrix	21873635.	IBA	Component
GO:0016605	PML body	21873635.	IBA	Component
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	-	IEA	Function
GO:0031297	replication fork processing	21873635.	IBA	Process
GO:0032508	DNA duplex unwinding	21873635.	IBA	Process
GO:0036310	annealing helicase activity	21873635.	IBA	Function
GO:0042803	protein homodimerization activity	21873635.	IBA	Function
GO:0043066	negative regulation of apoptotic process	21873635.	IBA	Process
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	21873635.	IBA	Function
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	-	IEA	Function
GO:0044237	cellular metabolic process	-	IEA	Process
GO:0044806	G-quadruplex DNA unwinding	21873635.	IBA	Process
GO:0045003	double-strand break repair via synthesis-dependent strand annealing	21873635.	IBA	Process
GO:0045120	pronucleus	21873635.	IBA	Component
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045950	negative regulation of mitotic recombination	21873635.	IBA	Process
GO:0045950	negative regulation of mitotic recombination	17483412.	IMP	Process
GO:0046632	alpha-beta T cell differentiation	21873635.	IBA	Process
GO:0046641	positive regulation of alpha-beta T cell proliferation	21873635.	IBA	Process
GO:0051259	protein complex oligomerization	21873635.	IBA	Process
GO:0051260	protein homooligomerization	21873635.	IBA	Process
GO:0051307	meiotic chromosome separation	21873635.	IBA	Process
GO:0051782	negative regulation of cell division	21873635.	IBA	Process
GO:0061749	forked DNA-dependent helicase activity	21873635.	IBA	Function
GO:0061820	telomeric D-loop disassembly	21873635.	IBA	Process
GO:0061821	telomeric D-loop binding	21873635.	IBA	Function
GO:0070244	negative regulation of thymocyte apoptotic process	21873635.	IBA	Process
GO:0071139	resolution of recombination intermediates	21873635.	IBA	Process
GO:0071479	cellular response to ionizing radiation	21873635.	IBA	Process
GO:0072711	cellular response to hydroxyurea	21873635.	IBA	Process
GO:0090329	regulation of DNA-dependent DNA replication	21873635.	IBA	Process
GO:1901291	negative regulation of double-strand break repair via single-strand annealing	21873635.	IBA	Process
GO:1905168	positive regulation of double-strand break repair via homologous recombination	21873635.	IBA	Process
GO:1905773	8-hydroxy-2'-deoxyguanosine DNA binding	21873635.	IBA	Function