EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000077093 (Gene tree)
Gene ID: 567501
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD-associated factor 4a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 19318 bases
Position: chr10:25697636-25716953
Accession: ZDB-GENE-030131-9003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000107896	RRM_1	PF00076.22	1e-06	1	1
ENSDARP00000117610	RRM_1	PF00076.22	1.1e-06	1	1
ENSDARP00000146530	RRM_1	PF00076.22	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000181678	-	3468	-	ENSDARP00000146530	1056 (aa)	-	E9QEN4
ENSDART00000125665	-	7153	XM_690795	ENSDARP00000107896	1070 (aa)	XP_695887	E7F4U8
ENSDART00000140483	-	3968	-	ENSDARP00000117610	1056 (aa)	-	E9QEN4

Gene Model

Click here to download ENSDARG00000077093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000077093's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000077093	scaf4a	79	44.888	ENSAPOG00000019615	scaf4b	99	46.136	Acanthochromis_polyacanthus
ENSDARG00000077093	scaf4a	79	56.455	ENSAPOG00000002946	scaf4a	84	57.362	Acanthochromis_polyacanthus
ENSDARG00000077093	scaf4a	79	46.597	ENSAOCG00000010433	scaf4b	99	47.514	Amphiprion_ocellaris
ENSDARG00000077093	scaf4a	79	57.174	ENSAOCG00000000615	scaf4a	83	57.684	Amphiprion_ocellaris
ENSDARG00000077093	scaf4a	100	50.685	ENSAPEG00000021229	scaf4a	84	57.480	Amphiprion_percula
ENSDARG00000077093	scaf4a	79	46.597	ENSAPEG00000010913	scaf4b	99	47.514	Amphiprion_percula
ENSDARG00000077093	scaf4a	50	68.817	ENSACAG00000002569	SCAF4	76	54.115	Anolis_carolinensis
ENSDARG00000077093	scaf4a	87	69.215	ENSAMXG00000008585	scaf4a	98	70.901	Astyanax_mexicanus
ENSDARG00000077093	scaf4a	56	57.273	ENSCJAG00000008993	SCAF4	88	57.213	Callithrix_jacchus
ENSDARG00000077093	scaf4a	56	60.498	ENSCAFG00000008863	SCAF4	89	50.145	Canis_familiaris
ENSDARG00000077093	scaf4a	56	60.440	ENSCAFG00020026019	SCAF4	85	54.595	Canis_lupus_dingo
ENSDARG00000077093	scaf4a	56	60.606	ENSCHIG00000008385	SCAF4	79	54.158	Capra_hircus
ENSDARG00000077093	scaf4a	56	61.075	ENSCCAG00000033727	SCAF4	78	52.799	Cebus_capucinus
ENSDARG00000077093	scaf4a	98	52.051	ENSCSEG00000019549	scaf4a	83	53.830	Cynoglossus_semilaevis
ENSDARG00000077093	scaf4a	56	60.337	ENSEASG00005007756	SCAF4	79	53.921	Equus_asinus_asinus
ENSDARG00000077093	scaf4a	56	60.337	ENSECAG00000014248	SCAF4	79	53.921	Equus_caballus
ENSDARG00000077093	scaf4a	66	58.411	ENSFHEG00000017866	scaf4a	64	55.597	Fundulus_heteroclitus
ENSDARG00000077093	scaf4a	59	56.973	ENSGALG00000033965	SCAF4	89	51.300	Gallus_gallus
ENSDARG00000077093	scaf4a	67	57.592	ENSGAFG00000019460	scaf4a	87	55.893	Gambusia_affinis
ENSDARG00000077093	scaf4a	70	56.218	ENSGACG00000020580	scaf4a	82	56.218	Gasterosteus_aculeatus
ENSDARG00000077093	scaf4a	78	55.973	ENSLBEG00000014675	scaf4a	83	55.638	Labrus_bergylta
ENSDARG00000077093	scaf4a	52	53.209	ENSLOCG00000009162	scaf4a	89	60.829	Lepisosteus_oculatus
ENSDARG00000077093	scaf4a	54	69.159	ENSLAFG00000010710	SCAF4	72	55.774	Loxodonta_africana
ENSDARG00000077093	scaf4a	73	44.855	ENSMAMG00000013223	scaf4a	78	51.363	Mastacembelus_armatus
ENSDARG00000077093	scaf4a	99	51.668	ENSMZEG00005024349	scaf4a	85	56.199	Maylandia_zebra
ENSDARG00000077093	scaf4a	58	56.541	ENSMGAG00000014515	SCAF4	89	50.959	Meleagris_gallopavo
ENSDARG00000077093	scaf4a	69	57.649	ENSORLG00000004384	scaf4a	86	51.801	Oryzias_latipes
ENSDARG00000077093	scaf4a	69	56.107	ENSORLG00000003420	scaf4b	99	42.021	Oryzias_latipes
ENSDARG00000077093	scaf4a	69	55.720	ENSORLG00020013853	scaf4b	82	50.168	Oryzias_latipes_hni
ENSDARG00000077093	scaf4a	94	49.344	ENSORLG00020011857	scaf4a	86	49.903	Oryzias_latipes_hni
ENSDARG00000077093	scaf4a	94	51.053	ENSORLG00015017880	scaf4a	86	52.750	Oryzias_latipes_hsok
ENSDARG00000077093	scaf4a	69	59.085	ENSOMEG00000014482	scaf4a	66	58.831	Oryzias_melastigma
ENSDARG00000077093	scaf4a	53	60.912	ENSOGAG00000014653	SCAF4	72	57.093	Otolemur_garnettii
ENSDARG00000077093	scaf4a	56	59.385	ENSOARG00000013894	SCAF4	78	53.312	Ovis_aries
ENSDARG00000077093	scaf4a	54	54.441	ENSPPAG00000028535	SCAF4	72	57.317	Pan_paniscus
ENSDARG00000077093	scaf4a	56	59.783	ENSPPRG00000000635	SCAF4	89	49.904	Panthera_pardus
ENSDARG00000077093	scaf4a	54	54.441	ENSPTRG00000013848	SCAF4	72	57.317	Pan_troglodytes
ENSDARG00000077093	scaf4a	100	47.133	ENSPMGG00000016741	scaf4a	75	50.409	Periophthalmus_magnuspinnatus
ENSDARG00000077093	scaf4a	83	54.083	ENSPFOG00000017156	scaf4a	96	53.063	Poecilia_formosa
ENSDARG00000077093	scaf4a	60	54.198	ENSPFOG00000003261	scaf4b	51	58.019	Poecilia_formosa
ENSDARG00000077093	scaf4a	67	57.592	ENSPLAG00000001972	scaf4a	96	56.501	Poecilia_latipinna
ENSDARG00000077093	scaf4a	56	61.307	ENSPNAG00000015199	-	60	60.804	Pygocentrus_nattereri
ENSDARG00000077093	scaf4a	83	74.102	ENSPNAG00000016892	scaf4a	87	74.837	Pygocentrus_nattereri
ENSDARG00000077093	scaf4a	60	59.199	ENSSFOG00015006338	scaf4a	85	57.927	Scleropages_formosus
ENSDARG00000077093	scaf4a	98	48.690	ENSSMAG00000017901	scaf4a	84	53.671	Scophthalmus_maximus
ENSDARG00000077093	scaf4a	79	47.541	ENSSMAG00000003738	scaf4b	99	45.276	Scophthalmus_maximus
ENSDARG00000077093	scaf4a	79	56.774	ENSSDUG00000012918	scaf4a	84	56.754	Seriola_dumerili
ENSDARG00000077093	scaf4a	79	56.941	ENSSLDG00000021671	scaf4a	83	56.566	Seriola_lalandi_dorsalis
ENSDARG00000077093	scaf4a	56	59.789	ENSSSCG00000021023	SCAF4	79	53.433	Sus_scrofa
ENSDARG00000077093	scaf4a	64	56.738	ENSTRUG00000009536	-	63	61.735	Takifugu_rubripes
ENSDARG00000077093	scaf4a	56	59.282	ENSTTRG00000010963	SCAF4	79	53.536	Tursiops_truncatus
ENSDARG00000077093	scaf4a	56	60.796	ENSUAMG00000008860	SCAF4	88	50.245	Ursus_americanus
ENSDARG00000077093	scaf4a	56	60.345	ENSVVUG00000002953	SCAF4	79	53.159	Vulpes_vulpes
ENSDARG00000077093	scaf4a	62	53.677	ENSXETG00000007351	scaf4	71	59.195	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function