EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000077126 (Gene tree)
Gene ID: 445398
Gene Symbol: snrnp70
Alias: U1 small ribonucleoprotein 70kd|snrp70|wu:fc20b04|zgc:136450
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 8708 bases
Position: chr3:31925067-31933774
Accession: ZDB-GENE-040825-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000055278	RRM_1	PF00076.22	2.3e-19	1	1
ENSDARP00000104726	RRM_1	PF00076.22	1e-15	1	1
ENSDARP00000104726	U1snRNP70_N	PF12220.8	2.1e-25	1	1
ENSDARP00000055278	U1snRNP70_N	PF12220.8	3.7e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000127330	-	885	XM_017354005	ENSDARP00000104726	162 (aa)	XP_017209494	E7EY23
ENSDART00000055279	-	2488	-	ENSDARP00000055278	495 (aa)	-	Q6DRE8

Gene Model

Click here to download ENSDARG00000077126's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000077126's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000077126	snrnp70	99	88.820	ENSG00000104852	SNRNP70	99	86.585	Homo_sapiens
ENSDARG00000077126	snrnp70	88	89.437	ENSAPOG00000009322	snrnp70	89	89.437	Acanthochromis_polyacanthus
ENSDARG00000077126	snrnp70	99	88.820	ENSAMEG00000014468	SNRNP70	51	85.268	Ailuropoda_melanoleuca
ENSDARG00000077126	snrnp70	99	95.031	ENSAOCG00000011672	snrnp70	50	84.305	Amphiprion_ocellaris
ENSDARG00000077126	snrnp70	99	95.031	ENSATEG00000008748	snrnp70	50	95.111	Anabas_testudineus
ENSDARG00000077126	snrnp70	99	89.441	ENSACAG00000013276	SNRNP70	51	91.441	Anolis_carolinensis
ENSDARG00000077126	snrnp70	99	88.820	ENSANAG00000036787	SNRNP70	99	86.585	Aotus_nancymaae
ENSDARG00000077126	snrnp70	99	88.125	ENSBTAG00000048800	-	99	86.585	Bos_taurus
ENSDARG00000077126	snrnp70	99	49.383	WBGene00004390	rnp-7	56	51.596	Caenorhabditis_elegans
ENSDARG00000077126	snrnp70	99	88.820	ENSCJAG00000000193	SNRNP70	99	86.585	Callithrix_jacchus
ENSDARG00000077126	snrnp70	99	88.820	ENSCAFG00000003711	SNRNP70	99	86.585	Canis_familiaris
ENSDARG00000077126	snrnp70	99	84.663	ENSCAFG00020025470	SNRNP70	99	82.530	Canis_lupus_dingo
ENSDARG00000077126	snrnp70	99	88.125	ENSCHIG00000018534	-	99	86.585	Capra_hircus
ENSDARG00000077126	snrnp70	65	78.095	ENSTSYG00000032350	-	85	78.095	Carlito_syrichta
ENSDARG00000077126	snrnp70	99	88.820	ENSCPOG00000019589	SNRNP70	51	91.031	Cavia_porcellus
ENSDARG00000077126	snrnp70	99	88.820	ENSCATG00000016149	SNRNP70	51	91.031	Cercocebus_atys
ENSDARG00000077126	snrnp70	99	88.820	ENSCLAG00000007991	SNRNP70	51	91.031	Chinchilla_lanigera
ENSDARG00000077126	snrnp70	99	88.820	ENSCSAG00000002759	SNRNP70	52	90.991	Chlorocebus_sabaeus
ENSDARG00000077126	snrnp70	99	89.441	ENSCPBG00000014841	SNRNP70	51	91.441	Chrysemys_picta_bellii
ENSDARG00000077126	snrnp70	99	65.432	ENSCSAVG00000010109	-	50	69.110	Ciona_savignyi
ENSDARG00000077126	snrnp70	99	88.820	ENSCANG00000036607	SNRNP70	90	91.031	Colobus_angolensis_palliatus
ENSDARG00000077126	snrnp70	99	88.820	ENSCGRG00001020676	Snrnp70	50	91.031	Cricetulus_griseus_chok1gshd
ENSDARG00000077126	snrnp70	99	88.820	ENSCGRG00000018048	Snrnp70	50	91.031	Cricetulus_griseus_crigri
ENSDARG00000077126	snrnp70	99	95.031	ENSCSEG00000011978	snrnp70	99	95.089	Cynoglossus_semilaevis
ENSDARG00000077126	snrnp70	98	94.969	ENSCVAG00000003912	snrnp70	99	94.969	Cyprinodon_variegatus
ENSDARG00000077126	snrnp70	99	88.125	ENSDNOG00000035849	-	99	86.585	Dasypus_novemcinctus
ENSDARG00000077126	snrnp70	99	88.820	ENSDORG00000010228	Snrnp70	50	91.031	Dipodomys_ordii
ENSDARG00000077126	snrnp70	99	88.820	ENSEASG00005004917	SNRNP70	51	91.031	Equus_asinus_asinus
ENSDARG00000077126	snrnp70	99	88.125	ENSECAG00000013936	-	99	86.585	Equus_caballus
ENSDARG00000077126	snrnp70	99	65.217	ENSEEUG00000005666	SNRNP70	51	69.058	Erinaceus_europaeus
ENSDARG00000077126	snrnp70	99	88.820	ENSFCAG00000042603	SNRNP70	53	91.031	Felis_catus
ENSDARG00000077126	snrnp70	99	88.820	ENSFDAG00000013830	SNRNP70	95	90.123	Fukomys_damarensis
ENSDARG00000077126	snrnp70	99	93.168	ENSGMOG00000011492	snrnp70	99	93.363	Gadus_morhua
ENSDARG00000077126	snrnp70	99	93.789	ENSGACG00000000448	snrnp70	70	94.196	Gasterosteus_aculeatus
ENSDARG00000077126	snrnp70	98	72.308	ENSGAGG00000012628	SNRNP70	99	70.256	Gopherus_agassizii
ENSDARG00000077126	snrnp70	99	88.820	ENSGGOG00000008245	SNRNP70	99	86.585	Gorilla_gorilla
ENSDARG00000077126	snrnp70	99	88.125	ENSHGLG00100001651	-	99	86.585	Heterocephalus_glaber_male
ENSDARG00000077126	snrnp70	99	88.125	ENSSTOG00000013988	-	99	86.585	Ictidomys_tridecemlineatus
ENSDARG00000077126	snrnp70	99	88.820	ENSJJAG00000002614	Snrnp70	50	91.031	Jaculus_jaculus
ENSDARG00000077126	snrnp70	99	88.820	ENSLAFG00000028536	SNRNP70	97	91.031	Loxodonta_africana
ENSDARG00000077126	snrnp70	99	88.820	ENSMFAG00000039824	SNRNP70	51	91.031	Macaca_fascicularis
ENSDARG00000077126	snrnp70	99	88.820	ENSMMUG00000004928	SNRNP70	99	86.585	Macaca_mulatta
ENSDARG00000077126	snrnp70	99	88.820	ENSMNEG00000038057	SNRNP70	52	91.031	Macaca_nemestrina
ENSDARG00000077126	snrnp70	99	88.820	ENSMLEG00000030967	SNRNP70	51	91.031	Mandrillus_leucophaeus
ENSDARG00000077126	snrnp70	99	88.820	ENSMAUG00000020970	Snrnp70	50	91.031	Mesocricetus_auratus
ENSDARG00000077126	snrnp70	99	88.820	ENSMICG00000038437	SNRNP70	99	86.585	Microcebus_murinus
ENSDARG00000077126	snrnp70	99	88.820	ENSMOCG00000012825	Snrnp70	50	91.031	Microtus_ochrogaster
ENSDARG00000077126	snrnp70	99	88.820	MGP_CAROLIEiJ_G0029714	Snrnp70	100	88.991	Mus_caroli
ENSDARG00000077126	snrnp70	99	88.820	ENSMUSG00000063511	Snrnp70	100	88.991	Mus_musculus
ENSDARG00000077126	snrnp70	99	88.820	MGP_PahariEiJ_G0012939	Snrnp70	100	88.991	Mus_pahari
ENSDARG00000077126	snrnp70	99	88.820	MGP_SPRETEiJ_G0030812	Snrnp70	100	88.991	Mus_spretus
ENSDARG00000077126	snrnp70	99	88.820	ENSMPUG00000003258	SNRNP70	51	91.031	Mustela_putorius_furo
ENSDARG00000077126	snrnp70	99	88.820	ENSMLUG00000011766	SNRNP70	51	91.031	Myotis_lucifugus
ENSDARG00000077126	snrnp70	99	88.820	ENSNGAG00000021191	Snrnp70	95	90.123	Nannospalax_galili
ENSDARG00000077126	snrnp70	99	95.031	ENSNBRG00000003126	snrnp70	97	95.556	Neolamprologus_brichardi
ENSDARG00000077126	snrnp70	96	88.387	ENSNLEG00000004899	SNRNP70	87	90.783	Nomascus_leucogenys
ENSDARG00000077126	snrnp70	99	95.652	ENSONIG00000007822	snrnp70	53	96.000	Oreochromis_niloticus
ENSDARG00000077126	snrnp70	99	88.820	ENSOANG00000005213	SNRNP70	98	90.179	Ornithorhynchus_anatinus
ENSDARG00000077126	snrnp70	99	88.272	ENSOGAG00000029310	SNRNP70	51	89.286	Otolemur_garnettii
ENSDARG00000077126	snrnp70	99	88.820	ENSPPAG00000035067	SNRNP70	99	86.585	Pan_paniscus
ENSDARG00000077126	snrnp70	99	88.820	ENSPPRG00000005579	SNRNP70	51	91.031	Panthera_pardus
ENSDARG00000077126	snrnp70	99	88.820	ENSPTRG00000011277	SNRNP70	99	86.585	Pan_troglodytes
ENSDARG00000077126	snrnp70	99	88.820	ENSPANG00000004068	SNRNP70	51	91.031	Papio_anubis
ENSDARG00000077126	snrnp70	99	85.093	ENSPKIG00000019992	snrnp70	86	84.568	Paramormyrops_kingsleyae
ENSDARG00000077126	snrnp70	99	88.750	ENSPSIG00000015251	SNRNP70	88	78.125	Pelodiscus_sinensis
ENSDARG00000077126	snrnp70	99	93.789	ENSPMGG00000010153	snrnp70	77	93.789	Periophthalmus_magnuspinnatus
ENSDARG00000077126	snrnp70	99	88.820	ENSPEMG00000019011	Snrnp70	50	91.031	Peromyscus_maniculatus_bairdii
ENSDARG00000077126	snrnp70	99	79.503	ENSPMAG00000008502	snrnp70	97	81.283	Petromyzon_marinus
ENSDARG00000077126	snrnp70	99	88.820	ENSPCIG00000007296	SNRNP70	52	90.991	Phascolarctos_cinereus
ENSDARG00000077126	snrnp70	99	88.820	ENSPPYG00000010234	SNRNP70	51	90.135	Pongo_abelii
ENSDARG00000077126	snrnp70	99	78.261	ENSPCOG00000023103	SNRNP70	79	83.408	Propithecus_coquereli
ENSDARG00000077126	snrnp70	99	80.745	ENSPVAG00000009578	SNRNP70	51	85.202	Pteropus_vampyrus
ENSDARG00000077126	snrnp70	99	88.820	ENSRBIG00000042387	SNRNP70	83	91.031	Rhinopithecus_bieti
ENSDARG00000077126	snrnp70	99	88.820	ENSRROG00000033636	SNRNP70	83	91.031	Rhinopithecus_roxellana
ENSDARG00000077126	snrnp70	99	88.820	ENSSBOG00000020026	SNRNP70	99	86.585	Saimiri_boliviensis_boliviensis
ENSDARG00000077126	snrnp70	99	88.820	ENSSHAG00000002194	SNRNP70	52	90.991	Sarcophilus_harrisii
ENSDARG00000077126	snrnp70	99	89.441	ENSSPUG00000016621	SNRNP70	52	91.441	Sphenodon_punctatus
ENSDARG00000077126	snrnp70	99	88.125	ENSSSCG00000023792	-	99	86.585	Sus_scrofa
ENSDARG00000077126	snrnp70	68	92.727	ENSTNIG00000014186	-	99	92.727	Tetraodon_nigroviridis
ENSDARG00000077126	snrnp70	99	88.820	ENSTTRG00000017099	SNRNP70	51	91.031	Tursiops_truncatus
ENSDARG00000077126	snrnp70	99	88.820	ENSUAMG00000016147	SNRNP70	51	91.031	Ursus_americanus
ENSDARG00000077126	snrnp70	99	88.820	ENSUMAG00000001467	SNRNP70	99	86.585	Ursus_maritimus
ENSDARG00000077126	snrnp70	81	87.023	ENSVPAG00000005959	-	100	78.281	Vicugna_pacos
ENSDARG00000077126	snrnp70	99	88.820	ENSVVUG00000022976	SNRNP70	99	86.585	Vulpes_vulpes
ENSDARG00000077126	snrnp70	99	88.820	ENSXETG00000022919	snrnp70	56	90.991	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	-	IEA	Component
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component
GO:0030619	U1 snRNA binding	-	IEA	Function
GO:0060218	hematopoietic stem cell differentiation	19332767.	IMP	Process