EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000077244 (Gene tree)
Gene ID: 571274
Gene Symbol: setd1bb
Alias: -
Full Name: SET domain containing 1B%2C b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 12876 bases
Position: chr8:34749288-34762163
Accession: ZDB-GENE-080522-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000102474	RRM_1	PF00076.22	7.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000114080	-	4745	XM_009304111	ENSDARP00000102474	1319 (aa)	XP_009302386	F1QJJ4

Gene Model

Click here to download ENSDARG00000077244's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000077244's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000077244	setd1bb	58	44.746	ENSCANG00000023445	SETD1B	57	32.651	Colobus_angolensis_palliatus
ENSDARG00000077244	setd1bb	75	40.631	ENSIPUG00000003992	-	79	39.774	Ictalurus_punctatus
ENSDARG00000077244	setd1bb	63	45.736	ENSORLG00015004156	setd1ba	60	42.793	Oryzias_latipes_hsok
ENSDARG00000077244	setd1bb	57	55.484	ENSPNAG00000012859	-	90	54.110	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0048188	Set1C/COMPASS complex	-	IEA	Component
GO:0051568	histone H3-K4 methylation	-	IEA	Process