EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000077536 (Gene tree)
Gene ID: 799690
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 23260 bases
Position: chr8:31030613-31053872
Accession: ZDB-GENE-081105-64
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000098660	ResIII	PF04851.15	1.2e-26	1	2
ENSDARP00000098660	ResIII	PF04851.15	1.2e-26	2	2
ENSDARP00000098660	DEAD	PF00270.29	4.4e-53	1	2
ENSDARP00000098660	DEAD	PF00270.29	4.4e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143385	-	768	-	-	- (aa)	-	-
ENSDART00000109885	-	7669	-	ENSDARP00000098660	2134 (aa)	-	B0S754

Gene Model

Click here to download ENSDARG00000077536's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000077536's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000077536	snrnp200	94	41.864	ENSDARG00000086678	ascc3	97	54.704

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000077536	snrnp200	99	90.356	ENSG00000144028	SNRNP200	99	91.652	Homo_sapiens
ENSDARG00000077536	snrnp200	99	94.499	ENSAPOG00000010223	snrnp200	100	94.476	Acanthochromis_polyacanthus
ENSDARG00000077536	snrnp200	99	90.403	ENSAMEG00000008996	SNRNP200	100	90.403	Ailuropoda_melanoleuca
ENSDARG00000077536	snrnp200	97	94.427	ENSACIG00000001764	snrnp200	98	94.477	Amphilophus_citrinellus
ENSDARG00000077536	snrnp200	99	94.358	ENSAOCG00000024593	snrnp200	100	94.335	Amphiprion_ocellaris
ENSDARG00000077536	snrnp200	97	93.998	ENSAPEG00000012554	snrnp200	100	93.998	Amphiprion_percula
ENSDARG00000077536	snrnp200	99	94.452	ENSATEG00000022522	snrnp200	100	94.429	Anabas_testudineus
ENSDARG00000077536	snrnp200	99	90.288	ENSAPLG00000004313	SNRNP200	100	90.288	Anas_platyrhynchos
ENSDARG00000077536	snrnp200	99	89.523	ENSACAG00000000434	SNRNP200	100	89.523	Anolis_carolinensis
ENSDARG00000077536	snrnp200	99	86.381	ENSANAG00000036625	SNRNP200	100	86.334	Aotus_nancymaae
ENSDARG00000077536	snrnp200	99	94.405	ENSACLG00000011188	snrnp200	100	94.382	Astatotilapia_calliptera
ENSDARG00000077536	snrnp200	99	95.908	ENSAMXG00000005684	snrnp200	100	95.878	Astyanax_mexicanus
ENSDARG00000077536	snrnp200	99	90.169	ENSBTAG00000000848	SNRNP200	100	90.169	Bos_taurus
ENSDARG00000077536	snrnp200	99	90.356	ENSCJAG00000007514	SNRNP200	100	90.356	Callithrix_jacchus
ENSDARG00000077536	snrnp200	99	89.641	ENSCAFG00020019979	SNRNP200	100	91.540	Canis_lupus_dingo
ENSDARG00000077536	snrnp200	99	90.122	ENSCHIG00000020611	SNRNP200	100	90.122	Capra_hircus
ENSDARG00000077536	snrnp200	99	90.403	ENSTSYG00000010467	SNRNP200	100	90.403	Carlito_syrichta
ENSDARG00000077536	snrnp200	99	89.892	ENSCAPG00000017234	SNRNP200	99	89.892	Cavia_aperea
ENSDARG00000077536	snrnp200	99	90.215	ENSCPOG00000006776	SNRNP200	100	90.215	Cavia_porcellus
ENSDARG00000077536	snrnp200	99	90.356	ENSCCAG00000033962	SNRNP200	100	90.356	Cebus_capucinus
ENSDARG00000077536	snrnp200	99	90.356	ENSCATG00000015790	SNRNP200	100	90.356	Cercocebus_atys
ENSDARG00000077536	snrnp200	99	90.169	ENSCLAG00000004116	SNRNP200	100	90.169	Chinchilla_lanigera
ENSDARG00000077536	snrnp200	99	90.356	ENSCSAG00000017369	SNRNP200	100	90.356	Chlorocebus_sabaeus
ENSDARG00000077536	snrnp200	73	93.701	ENSCHOG00000012981	-	58	93.701	Choloepus_hoffmanni
ENSDARG00000077536	snrnp200	99	90.369	ENSCPBG00000022571	SNRNP200	100	90.369	Chrysemys_picta_bellii
ENSDARG00000077536	snrnp200	99	75.899	ENSCING00000005082	-	99	76.004	Ciona_intestinalis
ENSDARG00000077536	snrnp200	94	90.045	ENSCANG00000033932	SNRNP200	100	90.045	Colobus_angolensis_palliatus
ENSDARG00000077536	snrnp200	99	90.356	ENSCGRG00001022610	Snrnp200	100	90.356	Cricetulus_griseus_chok1gshd
ENSDARG00000077536	snrnp200	99	89.855	ENSCGRG00000016472	Snrnp200	100	89.855	Cricetulus_griseus_crigri
ENSDARG00000077536	snrnp200	99	93.580	ENSCSEG00000016399	snrnp200	100	93.580	Cynoglossus_semilaevis
ENSDARG00000077536	snrnp200	100	89.232	ENSCVAG00000017631	snrnp200	100	89.232	Cyprinodon_variegatus
ENSDARG00000077536	snrnp200	99	88.998	ENSDNOG00000011227	SNRNP200	100	88.998	Dasypus_novemcinctus
ENSDARG00000077536	snrnp200	99	87.850	ENSDORG00000005861	Snrnp200	100	87.850	Dipodomys_ordii
ENSDARG00000077536	snrnp200	100	73.777	FBgn0263599	l(3)72Ab	100	73.777	Drosophila_melanogaster
ENSDARG00000077536	snrnp200	95	89.578	ENSETEG00000000162	SNRNP200	74	89.578	Echinops_telfairi
ENSDARG00000077536	snrnp200	83	80.179	ENSEBUG00000016524	snrnp200	95	80.179	Eptatretus_burgeri
ENSDARG00000077536	snrnp200	99	89.324	ENSEASG00005001884	SNRNP200	100	89.231	Equus_asinus_asinus
ENSDARG00000077536	snrnp200	99	90.403	ENSECAG00000019675	SNRNP200	100	90.403	Equus_caballus
ENSDARG00000077536	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSDARG00000077536	snrnp200	99	94.972	ENSELUG00000018948	snrnp200	100	94.946	Esox_lucius
ENSDARG00000077536	snrnp200	99	90.449	ENSFCAG00000010699	SNRNP200	100	90.449	Felis_catus
ENSDARG00000077536	snrnp200	93	86.607	ENSFALG00000001368	-	94	86.607	Ficedula_albicollis
ENSDARG00000077536	snrnp200	99	90.169	ENSFDAG00000004683	SNRNP200	100	90.169	Fukomys_damarensis
ENSDARG00000077536	snrnp200	100	91.713	ENSFHEG00000003786	snrnp200	100	91.713	Fundulus_heteroclitus
ENSDARG00000077536	snrnp200	100	93.645	ENSGMOG00000004881	snrnp200	99	93.645	Gadus_morhua
ENSDARG00000077536	snrnp200	100	91.526	ENSGAFG00000010807	snrnp200	100	91.526	Gambusia_affinis
ENSDARG00000077536	snrnp200	100	93.788	ENSGACG00000011474	snrnp200	99	93.835	Gasterosteus_aculeatus
ENSDARG00000077536	snrnp200	95	92.771	ENSGAGG00000016069	SNRNP200	99	90.283	Gopherus_agassizii
ENSDARG00000077536	snrnp200	99	90.356	ENSGGOG00000005174	SNRNP200	100	90.356	Gorilla_gorilla
ENSDARG00000077536	snrnp200	97	91.934	ENSHBUG00000011322	snrnp200	99	91.876	Haplochromis_burtoni
ENSDARG00000077536	snrnp200	99	90.215	ENSHGLG00000006654	SNRNP200	100	90.215	Heterocephalus_glaber_female
ENSDARG00000077536	snrnp200	99	90.215	ENSHGLG00100018594	SNRNP200	100	90.215	Heterocephalus_glaber_male
ENSDARG00000077536	snrnp200	99	90.403	ENSSTOG00000016351	SNRNP200	100	90.403	Ictidomys_tridecemlineatus
ENSDARG00000077536	snrnp200	99	90.169	ENSJJAG00000023659	Snrnp200	100	90.169	Jaculus_jaculus
ENSDARG00000077536	snrnp200	100	91.694	ENSKMAG00000003665	snrnp200	100	91.694	Kryptolebias_marmoratus
ENSDARG00000077536	snrnp200	100	94.616	ENSLBEG00000021585	snrnp200	100	94.616	Labrus_bergylta
ENSDARG00000077536	snrnp200	82	91.461	ENSLACG00000000226	SNRNP200	100	91.461	Latimeria_chalumnae
ENSDARG00000077536	snrnp200	100	93.826	ENSLOCG00000015198	snrnp200	100	93.826	Lepisosteus_oculatus
ENSDARG00000077536	snrnp200	99	90.122	ENSLAFG00000015626	SNRNP200	100	90.122	Loxodonta_africana
ENSDARG00000077536	snrnp200	99	90.309	ENSMFAG00000040174	SNRNP200	100	90.309	Macaca_fascicularis
ENSDARG00000077536	snrnp200	99	90.309	ENSMMUG00000023261	SNRNP200	100	90.309	Macaca_mulatta
ENSDARG00000077536	snrnp200	99	90.262	ENSMNEG00000032398	SNRNP200	100	90.262	Macaca_nemestrina
ENSDARG00000077536	snrnp200	99	90.356	ENSMLEG00000019083	SNRNP200	100	90.356	Mandrillus_leucophaeus
ENSDARG00000077536	snrnp200	100	93.964	ENSMAMG00000007851	snrnp200	100	93.917	Mastacembelus_armatus
ENSDARG00000077536	snrnp200	97	91.934	ENSMZEG00005010787	snrnp200	99	91.876	Maylandia_zebra
ENSDARG00000077536	snrnp200	97	89.840	ENSMGAG00000001831	SNRNP200	99	89.864	Meleagris_gallopavo
ENSDARG00000077536	snrnp200	99	90.403	ENSMAUG00000011825	Snrnp200	100	90.403	Mesocricetus_auratus
ENSDARG00000077536	snrnp200	99	90.309	ENSMICG00000004710	SNRNP200	100	90.309	Microcebus_murinus
ENSDARG00000077536	snrnp200	99	88.665	ENSMOCG00000011814	Snrnp200	100	88.665	Microtus_ochrogaster
ENSDARG00000077536	snrnp200	99	92.568	ENSMMOG00000014167	snrnp200	100	92.553	Mola_mola
ENSDARG00000077536	snrnp200	99	90.215	ENSMODG00000008475	SNRNP200	100	90.215	Monodelphis_domestica
ENSDARG00000077536	snrnp200	99	94.311	ENSMALG00000001973	snrnp200	100	94.288	Monopterus_albus
ENSDARG00000077536	snrnp200	99	90.262	MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.262	Mus_caroli
ENSDARG00000077536	snrnp200	99	90.309	ENSMUSG00000003660	Snrnp200	100	90.309	Mus_musculus
ENSDARG00000077536	snrnp200	99	90.309	MGP_PahariEiJ_G0025695	Snrnp200	100	90.309	Mus_pahari
ENSDARG00000077536	snrnp200	99	90.309	MGP_SPRETEiJ_G0025170	Snrnp200	100	91.989	Mus_spretus
ENSDARG00000077536	snrnp200	99	90.449	ENSMPUG00000008949	SNRNP200	100	90.449	Mustela_putorius_furo
ENSDARG00000077536	snrnp200	99	89.902	ENSMLUG00000010493	SNRNP200	100	89.902	Myotis_lucifugus
ENSDARG00000077536	snrnp200	99	87.079	ENSMLUG00000027511	-	100	87.079	Myotis_lucifugus
ENSDARG00000077536	snrnp200	99	90.356	ENSNGAG00000021993	Snrnp200	100	90.356	Nannospalax_galili
ENSDARG00000077536	snrnp200	90	94.544	ENSNBRG00000017960	snrnp200	98	94.599	Neolamprologus_brichardi
ENSDARG00000077536	snrnp200	99	86.093	ENSNLEG00000000025	SNRNP200	100	86.099	Nomascus_leucogenys
ENSDARG00000077536	snrnp200	99	93.056	ENSMEUG00000010532	SNRNP200	79	93.056	Notamacropus_eugenii
ENSDARG00000077536	snrnp200	96	89.202	ENSOPRG00000015464	SNRNP200	100	87.032	Ochotona_princeps
ENSDARG00000077536	snrnp200	99	90.122	ENSODEG00000008366	SNRNP200	100	90.122	Octodon_degus
ENSDARG00000077536	snrnp200	99	94.264	ENSONIG00000010714	snrnp200	100	94.242	Oreochromis_niloticus
ENSDARG00000077536	snrnp200	99	90.309	ENSOCUG00000009864	SNRNP200	100	90.309	Oryctolagus_cuniculus
ENSDARG00000077536	snrnp200	99	93.252	ENSORLG00000012286	snrnp200	100	93.272	Oryzias_latipes
ENSDARG00000077536	snrnp200	99	93.205	ENSORLG00020004648	snrnp200	100	93.205	Oryzias_latipes_hni
ENSDARG00000077536	snrnp200	99	93.205	ENSORLG00015019114	snrnp200	100	93.205	Oryzias_latipes_hsok
ENSDARG00000077536	snrnp200	99	93.653	ENSOMEG00000011834	snrnp200	100	93.633	Oryzias_melastigma
ENSDARG00000077536	snrnp200	99	90.403	ENSOGAG00000006879	SNRNP200	100	90.403	Otolemur_garnettii
ENSDARG00000077536	snrnp200	99	89.378	ENSOARG00000013949	SNRNP200	100	89.378	Ovis_aries
ENSDARG00000077536	snrnp200	99	90.356	ENSPPAG00000041559	SNRNP200	100	90.356	Pan_paniscus
ENSDARG00000077536	snrnp200	99	90.449	ENSPPRG00000004435	SNRNP200	100	90.449	Panthera_pardus
ENSDARG00000077536	snrnp200	99	90.028	ENSPTIG00000006380	SNRNP200	100	90.028	Panthera_tigris_altaica
ENSDARG00000077536	snrnp200	99	90.356	ENSPTRG00000012230	SNRNP200	100	90.356	Pan_troglodytes
ENSDARG00000077536	snrnp200	99	90.309	ENSPANG00000006017	SNRNP200	100	90.309	Papio_anubis
ENSDARG00000077536	snrnp200	100	94.431	ENSPKIG00000014762	snrnp200	100	94.431	Paramormyrops_kingsleyae
ENSDARG00000077536	snrnp200	99	89.378	ENSPSIG00000008580	SNRNP200	100	89.378	Pelodiscus_sinensis
ENSDARG00000077536	snrnp200	99	90.215	ENSPCIG00000023050	SNRNP200	100	90.215	Phascolarctos_cinereus
ENSDARG00000077536	snrnp200	100	94.057	ENSPFOG00000015110	snrnp200	100	94.057	Poecilia_formosa
ENSDARG00000077536	snrnp200	97	94.279	ENSPLAG00000006711	snrnp200	99	94.279	Poecilia_latipinna
ENSDARG00000077536	snrnp200	97	94.169	ENSPMEG00000021166	snrnp200	99	94.169	Poecilia_mexicana
ENSDARG00000077536	snrnp200	100	94.382	ENSPREG00000008875	snrnp200	100	94.382	Poecilia_reticulata
ENSDARG00000077536	snrnp200	99	90.356	ENSPPYG00000012068	SNRNP200	100	90.356	Pongo_abelii
ENSDARG00000077536	snrnp200	95	94.231	ENSPCAG00000008536	SNRNP200	83	94.231	Procavia_capensis
ENSDARG00000077536	snrnp200	99	90.356	ENSPCOG00000024608	SNRNP200	100	90.356	Propithecus_coquereli
ENSDARG00000077536	snrnp200	96	90.583	ENSPVAG00000005860	SNRNP200	92	90.583	Pteropus_vampyrus
ENSDARG00000077536	snrnp200	99	89.733	ENSPNYG00000017476	snrnp200	100	89.636	Pundamilia_nyererei
ENSDARG00000077536	snrnp200	100	90.918	ENSPNAG00000010998	snrnp200	100	90.918	Pygocentrus_nattereri
ENSDARG00000077536	snrnp200	99	90.403	ENSRNOG00000012157	Snrnp200	100	90.403	Rattus_norvegicus
ENSDARG00000077536	snrnp200	99	90.356	ENSRBIG00000044690	-	100	90.356	Rhinopithecus_bieti
ENSDARG00000077536	snrnp200	99	90.356	ENSRROG00000037952	-	100	90.356	Rhinopithecus_roxellana
ENSDARG00000077536	snrnp200	99	90.356	ENSSBOG00000035471	SNRNP200	100	90.356	Saimiri_boliviensis_boliviensis
ENSDARG00000077536	snrnp200	97	90.034	ENSSHAG00000000758	SNRNP200	99	90.058	Sarcophilus_harrisii
ENSDARG00000077536	snrnp200	99	94.314	ENSSFOG00015018826	snrnp200	100	94.291	Scleropages_formosus
ENSDARG00000077536	snrnp200	99	94.452	ENSSMAG00000005463	snrnp200	100	94.429	Scophthalmus_maximus
ENSDARG00000077536	snrnp200	99	94.640	ENSSDUG00000021410	snrnp200	100	94.616	Seriola_dumerili
ENSDARG00000077536	snrnp200	99	94.546	ENSSLDG00000010884	snrnp200	100	94.522	Seriola_lalandi_dorsalis
ENSDARG00000077536	snrnp200	95	87.668	ENSSARG00000010728	SNRNP200	96	87.634	Sorex_araneus
ENSDARG00000077536	snrnp200	99	90.169	ENSSPUG00000003726	-	100	90.169	Sphenodon_punctatus
ENSDARG00000077536	snrnp200	99	94.640	ENSSPAG00000001842	snrnp200	100	94.616	Stegastes_partitus
ENSDARG00000077536	snrnp200	99	90.356	ENSSSCG00000008127	SNRNP200	100	90.356	Sus_scrofa
ENSDARG00000077536	snrnp200	99	81.656	ENSTGUG00000014475	-	100	81.656	Taeniopygia_guttata
ENSDARG00000077536	snrnp200	99	93.888	ENSTRUG00000001307	snrnp200	100	93.867	Takifugu_rubripes
ENSDARG00000077536	snrnp200	99	89.001	ENSTNIG00000004320	snrnp200	100	81.720	Tetraodon_nigroviridis
ENSDARG00000077536	snrnp200	82	93.897	ENSTBEG00000003329	-	67	93.897	Tupaia_belangeri
ENSDARG00000077536	snrnp200	99	90.215	ENSTTRG00000004983	SNRNP200	100	90.215	Tursiops_truncatus
ENSDARG00000077536	snrnp200	75	82.849	ENSUAMG00000008395	-	95	83.043	Ursus_americanus
ENSDARG00000077536	snrnp200	99	90.449	ENSUMAG00000012385	SNRNP200	100	90.449	Ursus_maritimus
ENSDARG00000077536	snrnp200	87	96.429	ENSVPAG00000006434	SNRNP200	66	96.429	Vicugna_pacos
ENSDARG00000077536	snrnp200	99	90.238	ENSVVUG00000026247	SNRNP200	100	90.238	Vulpes_vulpes
ENSDARG00000077536	snrnp200	99	89.383	ENSXETG00000001243	snrnp200	100	89.383	Xenopus_tropicalis
ENSDARG00000077536	snrnp200	97	94.373	ENSXMAG00000002058	snrnp200	98	94.373	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000388	spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0008026	ATP-dependent helicase activity	21873635.	IBA	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component