EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000077732 (Gene tree)
Gene ID: 560127
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 11525 bases
Position: chr3:59880317-59891841
Accession: ZDB-GENE-070928-29
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000103201	RRM_1	PF00076.22	2.8e-13	1	1
ENSDARP00000139993	RRM_1	PF00076.22	2.9e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000166922	-	2937	-	ENSDARP00000139993	291 (aa)	-	A0A0R4IU36
ENSDART00000108647	-	2457	-	ENSDARP00000103201	280 (aa)	-	F1Q9D1

Gene Model

Click here to download ENSDARG00000077732's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG
dre03015	mRNA surveillance pathway	KEGG
dre03040	Spliceosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000077732's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000077732	alyref	100	54.737	ENSAPOG00000000183	-	100	54.225	Acanthochromis_polyacanthus
ENSDARG00000077732	alyref	100	51.361	ENSACIG00000020351	-	100	53.220	Amphilophus_citrinellus
ENSDARG00000077732	alyref	99	72.857	ENSACIG00000006351	alyref	98	77.580	Amphilophus_citrinellus
ENSDARG00000077732	alyref	100	55.282	ENSAOCG00000019305	-	100	54.930	Amphiprion_ocellaris
ENSDARG00000077732	alyref	100	76.241	ENSAOCG00000014012	alyref	100	82.270	Amphiprion_ocellaris
ENSDARG00000077732	alyref	100	76.241	ENSAPEG00000014603	alyref	100	82.270	Amphiprion_percula
ENSDARG00000077732	alyref	100	54.577	ENSAPEG00000013527	-	100	54.577	Amphiprion_percula
ENSDARG00000077732	alyref	100	56.643	ENSATEG00000000382	-	100	55.634	Anabas_testudineus
ENSDARG00000077732	alyref	100	70.629	ENSATEG00000004307	alyref	100	78.322	Anabas_testudineus
ENSDARG00000077732	alyref	100	56.794	ENSACLG00000010184	-	100	57.292	Astatotilapia_calliptera
ENSDARG00000077732	alyref	100	73.498	ENSACLG00000008432	alyref	100	77.739	Astatotilapia_calliptera
ENSDARG00000077732	alyref	100	77.739	ENSAMXG00000007359	alyref	100	79.505	Astyanax_mexicanus
ENSDARG00000077732	alyref	99	45.139	ENSCING00000013568	-	99	43.345	Ciona_intestinalis
ENSDARG00000077732	alyref	99	43.110	ENSCSAVG00000003324	-	99	42.808	Ciona_savignyi
ENSDARG00000077732	alyref	100	75.265	ENSCSEG00000017800	alyref	100	77.739	Cynoglossus_semilaevis
ENSDARG00000077732	alyref	100	47.163	ENSCVAG00000007789	-	100	46.154	Cyprinodon_variegatus
ENSDARG00000077732	alyref	100	75.000	ENSCVAG00000014869	alyref	100	77.580	Cyprinodon_variegatus
ENSDARG00000077732	alyref	98	43.750	FBgn0010774	Ref1	65	45.312	Drosophila_melanogaster
ENSDARG00000077732	alyref	70	48.768	ENSEBUG00000006305	alyref	100	40.702	Eptatretus_burgeri
ENSDARG00000077732	alyref	99	52.708	ENSEBUG00000008253	alyref	95	51.601	Eptatretus_burgeri
ENSDARG00000077732	alyref	100	67.596	ENSELUG00000008849	-	100	66.202	Esox_lucius
ENSDARG00000077732	alyref	100	77.143	ENSELUG00000017178	alyref	100	75.887	Esox_lucius
ENSDARG00000077732	alyref	57	79.245	ENSFALG00000011923	-	94	80.645	Ficedula_albicollis
ENSDARG00000077732	alyref	100	76.786	ENSFHEG00000019426	alyref	100	78.648	Fundulus_heteroclitus
ENSDARG00000077732	alyref	100	48.592	ENSFHEG00000004698	-	100	47.535	Fundulus_heteroclitus
ENSDARG00000077732	alyref	68	58.883	ENSGMOG00000013122	-	100	57.868	Gadus_morhua
ENSDARG00000077732	alyref	100	67.616	ENSGMOG00000009882	alyref	100	66.548	Gadus_morhua
ENSDARG00000077732	alyref	100	76.071	ENSGAFG00000006014	alyref	100	77.143	Gambusia_affinis
ENSDARG00000077732	alyref	100	47.163	ENSGAFG00000007573	-	100	45.455	Gambusia_affinis
ENSDARG00000077732	alyref	100	73.498	ENSHBUG00000020196	alyref	100	77.739	Haplochromis_burtoni
ENSDARG00000077732	alyref	100	56.747	ENSHBUG00000001454	-	100	56.897	Haplochromis_burtoni
ENSDARG00000077732	alyref	98	49.640	ENSHCOG00000012825	-	96	45.455	Hippocampus_comes
ENSDARG00000077732	alyref	100	80.714	ENSIPUG00000009469	alyref	100	80.783	Ictalurus_punctatus
ENSDARG00000077732	alyref	72	64.216	ENSSTOG00000016570	-	98	65.366	Ictidomys_tridecemlineatus
ENSDARG00000077732	alyref	100	76.868	ENSKMAG00000008912	alyref	100	81.979	Kryptolebias_marmoratus
ENSDARG00000077732	alyref	100	52.650	ENSKMAG00000006462	-	100	52.448	Kryptolebias_marmoratus
ENSDARG00000077732	alyref	99	48.057	ENSLBEG00000012930	-	100	45.833	Labrus_bergylta
ENSDARG00000077732	alyref	100	47.492	ENSLBEG00000005387	-	100	46.006	Labrus_bergylta
ENSDARG00000077732	alyref	100	75.714	ENSLBEG00000023118	alyref	91	76.512	Labrus_bergylta
ENSDARG00000077732	alyref	76	75.229	ENSLOCG00000013879	alyref	89	75.566	Lepisosteus_oculatus
ENSDARG00000077732	alyref	100	50.352	ENSMAMG00000005464	-	100	50.352	Mastacembelus_armatus
ENSDARG00000077732	alyref	100	72.792	ENSMAMG00000003034	alyref	100	78.521	Mastacembelus_armatus
ENSDARG00000077732	alyref	100	73.498	ENSMZEG00005008639	alyref	100	77.739	Maylandia_zebra
ENSDARG00000077732	alyref	100	56.446	ENSMZEG00005012096	-	100	56.944	Maylandia_zebra
ENSDARG00000077732	alyref	99	47.312	ENSMMOG00000007032	-	98	45.993	Mola_mola
ENSDARG00000077732	alyref	99	76.895	ENSMMOG00000012458	alyref	96	79.496	Mola_mola
ENSDARG00000077732	alyref	100	50.338	ENSMALG00000006054	-	100	49.485	Monopterus_albus
ENSDARG00000077732	alyref	100	58.333	ENSMLUG00000014372	-	100	58.007	Myotis_lucifugus
ENSDARG00000077732	alyref	98	54.448	ENSMLUG00000009247	-	98	52.265	Myotis_lucifugus
ENSDARG00000077732	alyref	98	55.714	ENSMLUG00000028605	-	98	55.245	Myotis_lucifugus
ENSDARG00000077732	alyref	98	55.596	ENSMLUG00000022178	-	98	54.545	Myotis_lucifugus
ENSDARG00000077732	alyref	98	55.986	ENSMLUG00000022467	-	98	52.431	Myotis_lucifugus
ENSDARG00000077732	alyref	100	57.491	ENSMLUG00000006521	-	100	56.897	Myotis_lucifugus
ENSDARG00000077732	alyref	100	56.401	ENSMLUG00000004098	-	100	55.172	Myotis_lucifugus
ENSDARG00000077732	alyref	98	56.318	ENSMLUG00000030671	-	99	55.872	Myotis_lucifugus
ENSDARG00000077732	alyref	100	63.571	ENSNGAG00000022014	-	100	59.929	Nannospalax_galili
ENSDARG00000077732	alyref	100	57.544	ENSNBRG00000017460	-	100	58.042	Neolamprologus_brichardi
ENSDARG00000077732	alyref	100	73.498	ENSNBRG00000001747	alyref	100	78.092	Neolamprologus_brichardi
ENSDARG00000077732	alyref	100	75.524	ENSONIG00000019434	alyref	100	80.769	Oreochromis_niloticus
ENSDARG00000077732	alyref	100	56.890	ENSONIG00000003296	-	100	57.394	Oreochromis_niloticus
ENSDARG00000077732	alyref	99	42.378	ENSORLG00000001620	-	60	46.725	Oryzias_latipes
ENSDARG00000077732	alyref	99	49.481	ENSORLG00020015673	-	99	47.535	Oryzias_latipes_hni
ENSDARG00000077732	alyref	100	78.571	ENSORLG00020011942	alyref	100	78.571	Oryzias_latipes_hni
ENSDARG00000077732	alyref	99	48.110	ENSORLG00015015143	-	99	47.203	Oryzias_latipes_hsok
ENSDARG00000077732	alyref	100	78.214	ENSORLG00015022664	alyref	100	78.571	Oryzias_latipes_hsok
ENSDARG00000077732	alyref	100	77.143	ENSOMEG00000019176	alyref	100	77.857	Oryzias_melastigma
ENSDARG00000077732	alyref	99	50.357	ENSOMEG00000007158	-	98	49.643	Oryzias_melastigma
ENSDARG00000077732	alyref	69	74.742	ENSPPAG00000036403	-	75	73.333	Pan_paniscus
ENSDARG00000077732	alyref	100	75.000	ENSPKIG00000007070	alyref	100	74.021	Paramormyrops_kingsleyae
ENSDARG00000077732	alyref	99	71.886	ENSPKIG00000006233	-	80	69.751	Paramormyrops_kingsleyae
ENSDARG00000077732	alyref	99	73.381	ENSPMGG00000016600	alyref	90	77.698	Periophthalmus_magnuspinnatus
ENSDARG00000077732	alyref	73	47.549	ENSPMGG00000012994	-	70	57.937	Periophthalmus_magnuspinnatus
ENSDARG00000077732	alyref	100	62.143	ENSPEMG00000016628	-	77	76.166	Peromyscus_maniculatus_bairdii
ENSDARG00000077732	alyref	100	46.643	ENSPFOG00000017094	-	100	45.455	Poecilia_formosa
ENSDARG00000077732	alyref	100	77.857	ENSPFOG00000022825	alyref	99	77.857	Poecilia_formosa
ENSDARG00000077732	alyref	100	46.643	ENSPLAG00000014380	-	100	45.455	Poecilia_latipinna
ENSDARG00000077732	alyref	100	77.500	ENSPLAG00000006948	alyref	100	77.857	Poecilia_latipinna
ENSDARG00000077732	alyref	100	77.857	ENSPMEG00000003547	alyref	100	77.857	Poecilia_mexicana
ENSDARG00000077732	alyref	100	46.643	ENSPMEG00000023039	-	100	45.455	Poecilia_mexicana
ENSDARG00000077732	alyref	100	77.143	ENSPREG00000015795	alyref	100	78.214	Poecilia_reticulata
ENSDARG00000077732	alyref	100	48.214	ENSPREG00000003649	-	100	46.479	Poecilia_reticulata
ENSDARG00000077732	alyref	100	73.498	ENSPNYG00000017498	alyref	100	77.739	Pundamilia_nyererei
ENSDARG00000077732	alyref	99	54.610	ENSPNYG00000002879	-	98	55.477	Pundamilia_nyererei
ENSDARG00000077732	alyref	100	80.851	ENSPNAG00000002531	alyref	100	80.851	Pygocentrus_nattereri
ENSDARG00000077732	alyref	71	76.500	ENSSBOG00000030924	-	87	75.000	Saimiri_boliviensis_boliviensis
ENSDARG00000077732	alyref	99	57.651	ENSSHAG00000000609	-	99	51.916	Sarcophilus_harrisii
ENSDARG00000077732	alyref	99	54.577	ENSSHAG00000012866	-	78	58.257	Sarcophilus_harrisii
ENSDARG00000077732	alyref	76	82.629	ENSSFOG00015003923	alyref	73	79.812	Scleropages_formosus
ENSDARG00000077732	alyref	68	79.167	ENSSFOG00015003678	alyref	83	78.125	Scleropages_formosus
ENSDARG00000077732	alyref	100	73.310	ENSSMAG00000009283	alyref	100	76.678	Scophthalmus_maximus
ENSDARG00000077732	alyref	100	50.342	ENSSMAG00000011169	-	100	52.885	Scophthalmus_maximus
ENSDARG00000077732	alyref	100	75.177	ENSSDUG00000016158	alyref	100	81.206	Seriola_dumerili
ENSDARG00000077732	alyref	100	72.438	ENSSLDG00000017803	alyref	100	79.859	Seriola_lalandi_dorsalis
ENSDARG00000077732	alyref	99	55.674	ENSSPAG00000017028	-	96	54.839	Stegastes_partitus
ENSDARG00000077732	alyref	100	50.171	ENSTRUG00000003051	-	100	45.541	Takifugu_rubripes
ENSDARG00000077732	alyref	100	69.718	ENSTNIG00000011595	alyref	100	68.310	Tetraodon_nigroviridis
ENSDARG00000077732	alyref	100	50.530	ENSTNIG00000014136	-	100	46.996	Tetraodon_nigroviridis
ENSDARG00000077732	alyref	69	75.773	ENSVVUG00000000272	-	82	76.804	Vulpes_vulpes
ENSDARG00000077732	alyref	99	75.090	ENSXCOG00000018047	alyref	99	76.071	Xiphophorus_couchianus
ENSDARG00000077732	alyref	100	47.872	ENSXMAG00000018086	-	100	46.127	Xiphophorus_maculatus
ENSDARG00000077732	alyref	99	75.090	ENSXMAG00000012218	alyref	99	76.071	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function