EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000078256 (Gene tree)
Gene ID: 100534921
Gene Symbol: ovol1b
Alias: si:dkey-17e16.13
Full Name: ovo-like zinc finger 1b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6357 bases
Position: chr21:25625026-25631382
Accession: ZDB-GENE-091204-357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000113006	zf-C2H2	PF00096.26	1.2e-16	1	3
ENSDARP00000113006	zf-C2H2	PF00096.26	1.2e-16	2	3
ENSDARP00000113006	zf-C2H2	PF00096.26	1.2e-16	3	3
ENSDARP00000113006	zf-met	PF12874.7	5.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000134678	-	976	XM_003200839	ENSDARP00000113006	285 (aa)	XP_003200887	E9QH99

Gene Model

Click here to download ENSDARG00000078256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000078256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000078256	ovol1b	90	52.669	ENSDARG00000076472	ovol1a	87	52.669

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000078256	ovol1b	90	53.546	ENSAMXG00000011046	ovol1a	94	50.649	Astyanax_mexicanus
ENSDARG00000078256	ovol1b	99	52.941	ENSAMXG00000041879	ovol1b	96	52.941	Astyanax_mexicanus
ENSDARG00000078256	ovol1b	90	50.671	ENSELUG00000000343	ovol1a	94	48.589	Esox_lucius
ENSDARG00000078256	ovol1b	90	51.148	ENSFHEG00000002773	-	96	48.225	Fundulus_heteroclitus
ENSDARG00000078256	ovol1b	86	49.593	ENSGACG00000018794	ovol1a	95	47.059	Gasterosteus_aculeatus
ENSDARG00000078256	ovol1b	99	48.137	ENSHCOG00000015860	ovol1a	96	48.137	Hippocampus_comes
ENSDARG00000078256	ovol1b	86	50.694	ENSKMAG00000002605	-	96	48.338	Kryptolebias_marmoratus
ENSDARG00000078256	ovol1b	90	50.331	ENSMAMG00000009768	ovol1a	96	47.198	Mastacembelus_armatus
ENSDARG00000078256	ovol1b	99	46.866	ENSMALG00000008421	ovol1a	96	46.866	Monopterus_albus
ENSDARG00000078256	ovol1b	98	56.140	ENSPKIG00000024718	ovol1a	95	55.405	Paramormyrops_kingsleyae
ENSDARG00000078256	ovol1b	99	46.291	ENSPFOG00000008841	-	96	46.884	Poecilia_formosa
ENSDARG00000078256	ovol1b	99	51.792	ENSPNAG00000020630	ovol1a	96	51.792	Pygocentrus_nattereri
ENSDARG00000078256	ovol1b	94	51.825	ENSPNAG00000016198	ovol1b	97	51.825	Pygocentrus_nattereri
ENSDARG00000078256	ovol1b	90	48.208	ENSSDUG00000009846	ovol1a	90	46.177	Seriola_dumerili
ENSDARG00000078256	ovol1b	55	55.882	ENSXCOG00000006461	-	67	55.882	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0009913	epidermal cell differentiation	21873635.	IBA	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function