EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDARG00000078324 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-263k4.2
Alias: -
Full Name: si:ch211-263k4.2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 61429 bases
Position: chr8:48480529-48541957
Accession: ZDB-GENE-081104-207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	1	9
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	2	9
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	3	9
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	4	9
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	5	9
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	6	9
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	7	9
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	8	9
ENSDARP00000107731	zf-C2H2	PF00096.26	2e-46	9	9
ENSDARP00000154637	zf-C2H2	PF00096.26	1.4e-25	1	5
ENSDARP00000154637	zf-C2H2	PF00096.26	1.4e-25	2	5
ENSDARP00000154637	zf-C2H2	PF00096.26	1.4e-25	3	5
ENSDARP00000154637	zf-C2H2	PF00096.26	1.4e-25	4	5
ENSDARP00000154637	zf-C2H2	PF00096.26	1.4e-25	5	5
ENSDARP00000080488	zf-C2H2	PF00096.26	2.9e-24	1	4
ENSDARP00000080488	zf-C2H2	PF00096.26	2.9e-24	2	4
ENSDARP00000080488	zf-C2H2	PF00096.26	2.9e-24	3	4
ENSDARP00000080488	zf-C2H2	PF00096.26	2.9e-24	4	4
ENSDARP00000154637	zf-met	PF12874.7	3.2e-07	1	1
ENSDARP00000107731	zf-met	PF12874.7	0.00012	1	1
ENSDARP00000154637	zf-C2H2_jaz	PF12171.8	1.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000122737	-	2783	XM_021478495	ENSDARP00000107731	927 (aa)	XP_021334170	B8A5T9
ENSDART00000186631	-	645	-	ENSDARP00000154637	214 (aa)	-	A0A2R8QHN2
ENSDART00000086053	-	2727	-	ENSDARP00000080488	908 (aa)	-	F1Q833

Gene Model

Click here to download ENSDARG00000078324's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000078324's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000078324	si:ch211-263k4.2	100	89.270	ENSAMXG00000014024	si:ch211-263k4.2	78	89.270	Astyanax_mexicanus
ENSDARG00000078324	si:ch211-263k4.2	85	88.136	ENSCSAVG00000004543	-	99	86.047	Ciona_savignyi
ENSDARG00000078324	si:ch211-263k4.2	100	87.876	ENSIPUG00000020607	prdm16	82	87.768	Ictalurus_punctatus
ENSDARG00000078324	si:ch211-263k4.2	100	80.790	ENSLOCG00000005336	si:ch211-263k4.2	90	77.656	Lepisosteus_oculatus
ENSDARG00000078324	si:ch211-263k4.2	100	78.953	ENSPKIG00000013811	si:ch211-263k4.2	78	79.082	Paramormyrops_kingsleyae
ENSDARG00000078324	si:ch211-263k4.2	100	89.914	ENSPNAG00000027070	si:ch211-263k4.2	78	89.914	Pygocentrus_nattereri
ENSDARG00000078324	si:ch211-263k4.2	100	73.611	ENSSFOG00015010518	si:ch211-263k4.2	77	72.222	Scleropages_formosus