EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000079575 (Gene tree)
Gene ID: 570215
Gene Symbol: aff3
Alias: id:ibd5053|si:dkey-19j7.2
Full Name: AF4/FMR2 family%2C member 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 16262 bases
Position: chr9:21490822-21507083
Accession: ZDB-GENE-030219-193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000113026	AF-4	PF05110.13	4e-129	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000137922	-	4342	XM_009304671	ENSDARP00000113026	1193 (aa)	XP_009302946	F1RA06
ENSDART00000131634	-	540	-	ENSDARP00000123194	180 (aa)	-	F1QE59

Gene Model

Click here to download ENSDARG00000079575's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000079575's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000079575	aff3	90	57.584	ENSAMXG00000005439	aff3	99	57.364	Astyanax_mexicanus
ENSDARG00000079575	aff3	67	57.905	ENSELUG00000020087	aff3	74	51.931	Esox_lucius
ENSDARG00000079575	aff3	99	58.780	ENSIPUG00000004129	aff3	98	58.416	Ictalurus_punctatus
ENSDARG00000079575	aff3	60	47.139	ENSPKIG00000011220	aff3	78	48.028	Paramormyrops_kingsleyae
ENSDARG00000079575	aff3	94	58.304	ENSPNAG00000001361	aff3	96	58.033	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003690	double-stranded DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008023	transcription elongation factor complex	21873635.	IBA	Component
GO:0032783	ELL-EAF complex	21873635.	IBA	Component