EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000079717 (Gene tree)
Gene ID: 334496
Gene Symbol: rbm12b
Alias: fi89g10|si:ch211-193p21.4|wu:fi89g10|zgc:56148
Full Name: RNA binding motif protein 12B
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5240 bases
Position: chr16:16232621-16237860
Accession: ZDB-GENE-030131-6428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000097607	RRM_1	PF00076.22	4e-21	1	2
ENSDARP00000097607	RRM_1	PF00076.22	4e-21	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000111912	-	2718	-	ENSDARP00000097607	685 (aa)	-	E7F6E2
ENSDART00000168747	-	2617	-	ENSDARP00000135687	315 (aa)	-	A0A0R4INU6

Gene Model

Click here to download ENSDARG00000079717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000079717's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000079717	rbm12b	65	38.384	ENSDARG00000053021	grsf1	67	38.384
ENSDARG00000079717	rbm12b	84	57.500	ENSDARG00000100636	rbm12	79	57.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000079717	rbm12b	82	41.558	ENSG00000183808	RBM12B	98	78.750	Homo_sapiens
ENSDARG00000079717	rbm12b	100	43.732	ENSAPOG00000013963	rbm12b	100	43.143	Acanthochromis_polyacanthus
ENSDARG00000079717	rbm12b	81	42.857	ENSAMEG00000007134	RBM12B	68	42.857	Ailuropoda_melanoleuca
ENSDARG00000079717	rbm12b	98	46.488	ENSACIG00000014943	rbm12b	94	69.444	Amphilophus_citrinellus
ENSDARG00000079717	rbm12b	100	43.590	ENSAOCG00000024270	rbm12b	100	43.062	Amphiprion_ocellaris
ENSDARG00000079717	rbm12b	99	48.864	ENSAPEG00000022079	rbm12b	96	49.407	Amphiprion_percula
ENSDARG00000079717	rbm12b	100	45.559	ENSATEG00000004578	rbm12b	97	45.259	Anabas_testudineus
ENSDARG00000079717	rbm12b	58	52.500	ENSATEG00000001886	zgc:153215	77	47.312	Anabas_testudineus
ENSDARG00000079717	rbm12b	100	38.889	ENSAPLG00000002020	RBM12B	100	39.112	Anas_platyrhynchos
ENSDARG00000079717	rbm12b	81	44.156	ENSACAG00000003463	RBM12B	57	44.156	Anolis_carolinensis
ENSDARG00000079717	rbm12b	91	40.472	ENSANAG00000034015	RBM12B	76	39.053	Aotus_nancymaae
ENSDARG00000079717	rbm12b	91	44.033	ENSACLG00000005578	rbm12b	100	44.033	Astatotilapia_calliptera
ENSDARG00000079717	rbm12b	100	43.058	ENSACLG00000005575	rbm12b	98	42.194	Astatotilapia_calliptera
ENSDARG00000079717	rbm12b	69	55.952	ENSAMXG00000020853	zgc:153215	73	55.952	Astyanax_mexicanus
ENSDARG00000079717	rbm12b	100	53.913	ENSAMXG00000041973	rbm12b	100	53.478	Astyanax_mexicanus
ENSDARG00000079717	rbm12b	82	41.558	ENSBTAG00000013408	RBM12B	67	41.558	Bos_taurus
ENSDARG00000079717	rbm12b	81	40.711	ENSCAFG00000009109	RBM12B	59	40.260	Canis_familiaris
ENSDARG00000079717	rbm12b	81	40.711	ENSCAFG00020012203	RBM12B	67	40.260	Canis_lupus_dingo
ENSDARG00000079717	rbm12b	74	39.887	ENSCHIG00000006790	RBM12B	71	39.469	Capra_hircus
ENSDARG00000079717	rbm12b	81	41.558	ENSTSYG00000012515	RBM12B	59	41.558	Carlito_syrichta
ENSDARG00000079717	rbm12b	81	42.857	ENSCAPG00000003543	RBM12B	61	42.857	Cavia_aperea
ENSDARG00000079717	rbm12b	81	42.857	ENSCPOG00000007815	RBM12B	61	42.857	Cavia_porcellus
ENSDARG00000079717	rbm12b	82	41.558	ENSCATG00000030769	RBM12B	68	41.558	Cercocebus_atys
ENSDARG00000079717	rbm12b	81	42.857	ENSCLAG00000017617	RBM12B	61	42.857	Chinchilla_lanigera
ENSDARG00000079717	rbm12b	81	41.558	ENSCSAG00000018559	RBM12B	58	41.558	Chlorocebus_sabaeus
ENSDARG00000079717	rbm12b	79	40.837	ENSCHOG00000008934	RBM12B	59	39.683	Choloepus_hoffmanni
ENSDARG00000079717	rbm12b	100	37.155	ENSCPBG00000003061	RBM12B	100	35.912	Chrysemys_picta_bellii
ENSDARG00000079717	rbm12b	82	41.558	ENSCANG00000030379	RBM12B	68	41.558	Colobus_angolensis_palliatus
ENSDARG00000079717	rbm12b	90	39.761	ENSCGRG00001008710	-	71	38.076	Cricetulus_griseus_chok1gshd
ENSDARG00000079717	rbm12b	99	42.817	ENSCSEG00000004610	rbm12b	97	42.143	Cynoglossus_semilaevis
ENSDARG00000079717	rbm12b	83	63.529	ENSCVAG00000011047	rbm12b	89	60.870	Cyprinodon_variegatus
ENSDARG00000079717	rbm12b	81	41.558	ENSDNOG00000041608	RBM12B	58	41.558	Dasypus_novemcinctus
ENSDARG00000079717	rbm12b	82	44.156	ENSDORG00000024034	-	61	44.156	Dipodomys_ordii
ENSDARG00000079717	rbm12b	72	40.784	ENSETEG00000013005	-	67	39.173	Echinops_telfairi
ENSDARG00000079717	rbm12b	82	41.558	ENSEASG00005016297	RBM12B	68	41.558	Equus_asinus_asinus
ENSDARG00000079717	rbm12b	81	41.558	ENSECAG00000017870	RBM12B	58	41.558	Equus_caballus
ENSDARG00000079717	rbm12b	69	34.496	ENSELUG00000009039	zgc:153215	97	34.118	Esox_lucius
ENSDARG00000079717	rbm12b	82	40.260	ENSFCAG00000029274	RBM12B	69	40.260	Felis_catus
ENSDARG00000079717	rbm12b	100	36.565	ENSFALG00000014893	RBM12B	100	36.115	Ficedula_albicollis
ENSDARG00000079717	rbm12b	81	42.857	ENSFDAG00000005576	RBM12B	59	42.857	Fukomys_damarensis
ENSDARG00000079717	rbm12b	84	56.989	ENSFHEG00000016425	rbm12b	89	56.989	Fundulus_heteroclitus
ENSDARG00000079717	rbm12b	99	45.520	ENSGMOG00000013467	rbm12b	99	45.415	Gadus_morhua
ENSDARG00000079717	rbm12b	100	38.683	ENSGALG00000035129	RBM12B	87	43.820	Gallus_gallus
ENSDARG00000079717	rbm12b	100	42.676	ENSGAFG00000007224	rbm12b	100	42.373	Gambusia_affinis
ENSDARG00000079717	rbm12b	100	44.239	ENSGACG00000008682	rbm12b	99	43.652	Gasterosteus_aculeatus
ENSDARG00000079717	rbm12b	100	36.653	ENSGAGG00000009774	RBM12B	100	35.408	Gopherus_agassizii
ENSDARG00000079717	rbm12b	82	41.558	ENSGGOG00000011909	RBM12B	67	41.558	Gorilla_gorilla
ENSDARG00000079717	rbm12b	100	42.897	ENSHBUG00000016227	rbm12b	100	41.890	Haplochromis_burtoni
ENSDARG00000079717	rbm12b	81	42.857	ENSHGLG00000009063	RBM12B	60	42.857	Heterocephalus_glaber_female
ENSDARG00000079717	rbm12b	81	42.857	ENSHGLG00100021324	RBM12B	60	42.857	Heterocephalus_glaber_male
ENSDARG00000079717	rbm12b	83	61.053	ENSHCOG00000014952	rbm12b	100	61.053	Hippocampus_comes
ENSDARG00000079717	rbm12b	100	55.072	ENSIPUG00000001167	RBM12B	97	54.638	Ictalurus_punctatus
ENSDARG00000079717	rbm12b	82	42.857	ENSSTOG00000027445	RBM12B	70	42.857	Ictidomys_tridecemlineatus
ENSDARG00000079717	rbm12b	81	40.519	ENSJJAG00000004165	-	66	40.260	Jaculus_jaculus
ENSDARG00000079717	rbm12b	69	30.561	ENSKMAG00000004958	zgc:153215	98	30.353	Kryptolebias_marmoratus
ENSDARG00000079717	rbm12b	84	65.476	ENSKMAG00000013704	rbm12b	96	40.278	Kryptolebias_marmoratus
ENSDARG00000079717	rbm12b	84	65.476	ENSKMAG00000013715	rbm12b	99	40.664	Kryptolebias_marmoratus
ENSDARG00000079717	rbm12b	71	41.935	ENSLACG00000007177	RBM12B	100	37.586	Latimeria_chalumnae
ENSDARG00000079717	rbm12b	99	48.506	ENSLOCG00000018344	rbm12b	99	48.580	Lepisosteus_oculatus
ENSDARG00000079717	rbm12b	82	40.000	ENSLAFG00000029949	RBM12B	72	40.000	Loxodonta_africana
ENSDARG00000079717	rbm12b	82	41.558	ENSMFAG00000045430	RBM12B	68	41.558	Macaca_fascicularis
ENSDARG00000079717	rbm12b	82	41.558	ENSMMUG00000005558	RBM12B	66	41.558	Macaca_mulatta
ENSDARG00000079717	rbm12b	82	41.558	ENSMNEG00000041292	RBM12B	68	41.558	Macaca_nemestrina
ENSDARG00000079717	rbm12b	82	41.558	ENSMLEG00000037288	RBM12B	66	41.558	Mandrillus_leucophaeus
ENSDARG00000079717	rbm12b	82	67.073	ENSMAMG00000011998	rbm12b	100	44.317	Mastacembelus_armatus
ENSDARG00000079717	rbm12b	100	42.777	ENSMZEG00005015005	rbm12b	100	42.053	Maylandia_zebra
ENSDARG00000079717	rbm12b	100	40.533	ENSMZEG00005014845	rbm12b	99	39.972	Maylandia_zebra
ENSDARG00000079717	rbm12b	71	43.021	ENSMGAG00000011985	RBM12B	99	42.885	Meleagris_gallopavo
ENSDARG00000079717	rbm12b	81	46.753	ENSMAUG00000021752	-	69	46.753	Mesocricetus_auratus
ENSDARG00000079717	rbm12b	82	41.558	ENSMICG00000036969	RBM12B	69	41.558	Microcebus_murinus
ENSDARG00000079717	rbm12b	81	46.753	ENSMOCG00000005603	-	72	46.753	Microtus_ochrogaster
ENSDARG00000079717	rbm12b	99	41.379	ENSMMOG00000002404	rbm12b	94	40.981	Mola_mola
ENSDARG00000079717	rbm12b	100	37.250	ENSMODG00000007436	RBM12B	98	37.250	Monodelphis_domestica
ENSDARG00000079717	rbm12b	69	31.250	ENSMALG00000001222	zgc:153215	98	30.271	Monopterus_albus
ENSDARG00000079717	rbm12b	100	45.351	ENSMALG00000012059	rbm12b	100	45.050	Monopterus_albus
ENSDARG00000079717	rbm12b	91	40.927	ENSMUSG00000046667	Rbm12b1	100	39.676	Mus_musculus
ENSDARG00000079717	rbm12b	82	40.726	ENSMUSG00000052137	Rbm12b2	69	39.474	Mus_musculus
ENSDARG00000079717	rbm12b	82	40.726	MGP_SPRETEiJ_G0026765	-	63	39.394	Mus_spretus
ENSDARG00000079717	rbm12b	82	40.726	MGP_SPRETEiJ_G0026766	-	69	39.474	Mus_spretus
ENSDARG00000079717	rbm12b	81	41.558	ENSMPUG00000018637	RBM12B	59	41.558	Mustela_putorius_furo
ENSDARG00000079717	rbm12b	81	41.026	ENSMLUG00000002359	RBM12B	59	40.260	Myotis_lucifugus
ENSDARG00000079717	rbm12b	81	41.558	ENSNGAG00000002801	-	61	41.558	Nannospalax_galili
ENSDARG00000079717	rbm12b	100	43.338	ENSNBRG00000015057	rbm12b	100	42.335	Neolamprologus_brichardi
ENSDARG00000079717	rbm12b	82	41.558	ENSNLEG00000032050	RBM12B	67	41.558	Nomascus_leucogenys
ENSDARG00000079717	rbm12b	81	42.857	ENSODEG00000019204	RBM12B	61	42.857	Octodon_degus
ENSDARG00000079717	rbm12b	100	40.594	ENSONIG00000020612	rbm12b	100	40.453	Oreochromis_niloticus
ENSDARG00000079717	rbm12b	100	34.987	ENSOANG00000015735	-	97	36.749	Ornithorhynchus_anatinus
ENSDARG00000079717	rbm12b	90	41.093	ENSOCUG00000010353	RBM12B	67	41.558	Oryctolagus_cuniculus
ENSDARG00000079717	rbm12b	100	43.040	ENSORLG00000008228	rbm12b	97	40.673	Oryzias_latipes
ENSDARG00000079717	rbm12b	100	42.351	ENSORLG00020013619	rbm12b	97	41.880	Oryzias_latipes_hni
ENSDARG00000079717	rbm12b	100	42.898	ENSORLG00015019999	rbm12b	97	41.880	Oryzias_latipes_hsok
ENSDARG00000079717	rbm12b	100	43.404	ENSOMEG00000022523	rbm12b	97	42.695	Oryzias_melastigma
ENSDARG00000079717	rbm12b	82	40.755	ENSOGAG00000002979	RBM12B	59	39.726	Otolemur_garnettii
ENSDARG00000079717	rbm12b	82	40.430	ENSPTIG00000020071	RBM12B	69	40.260	Panthera_tigris_altaica
ENSDARG00000079717	rbm12b	82	41.558	ENSPTRG00000020420	RBM12B	66	41.558	Pan_troglodytes
ENSDARG00000079717	rbm12b	82	41.558	ENSPANG00000035535	RBM12B	66	41.558	Papio_anubis
ENSDARG00000079717	rbm12b	84	59.375	ENSPKIG00000018719	rbm12b	88	59.375	Paramormyrops_kingsleyae
ENSDARG00000079717	rbm12b	100	36.842	ENSPSIG00000001348	RBM12B	100	35.457	Pelodiscus_sinensis
ENSDARG00000079717	rbm12b	63	42.486	ENSPMGG00000012348	-	95	44.828	Periophthalmus_magnuspinnatus
ENSDARG00000079717	rbm12b	82	42.697	ENSPEMG00000008279	-	69	42.697	Peromyscus_maniculatus_bairdii
ENSDARG00000079717	rbm12b	70	41.860	ENSPCIG00000008556	RBM12B	67	42.524	Phascolarctos_cinereus
ENSDARG00000079717	rbm12b	100	43.228	ENSPFOG00000020937	rbm12b	97	41.877	Poecilia_formosa
ENSDARG00000079717	rbm12b	62	55.814	ENSPFOG00000017451	zgc:153215	70	55.814	Poecilia_formosa
ENSDARG00000079717	rbm12b	100	42.716	ENSPLAG00000018782	rbm12b	100	42.120	Poecilia_latipinna
ENSDARG00000079717	rbm12b	100	42.008	ENSPMEG00000011418	rbm12b	100	41.841	Poecilia_mexicana
ENSDARG00000079717	rbm12b	100	42.877	ENSPREG00000020770	rbm12b	100	42.281	Poecilia_reticulata
ENSDARG00000079717	rbm12b	81	41.558	ENSPPYG00000018745	RBM12B	58	41.558	Pongo_abelii
ENSDARG00000079717	rbm12b	82	42.857	ENSPCOG00000023546	RBM12B	67	42.857	Propithecus_coquereli
ENSDARG00000079717	rbm12b	81	41.558	ENSPVAG00000011803	RBM12B	63	41.558	Pteropus_vampyrus
ENSDARG00000079717	rbm12b	100	42.797	ENSPNYG00000016696	rbm12b	100	42.553	Pundamilia_nyererei
ENSDARG00000079717	rbm12b	100	54.649	ENSPNAG00000008126	rbm12b	97	54.454	Pygocentrus_nattereri
ENSDARG00000079717	rbm12b	59	52.809	ENSPNAG00000025628	zgc:153215	76	52.809	Pygocentrus_nattereri
ENSDARG00000079717	rbm12b	70	41.317	ENSRNOG00000055292	LOC679087	65	40.121	Rattus_norvegicus
ENSDARG00000079717	rbm12b	81	44.000	ENSRNOG00000016330	Rbm12b	67	44.000	Rattus_norvegicus
ENSDARG00000079717	rbm12b	82	41.558	ENSRBIG00000035046	RBM12B	66	41.558	Rhinopithecus_bieti
ENSDARG00000079717	rbm12b	82	41.558	ENSRROG00000023660	RBM12B	70	41.558	Rhinopithecus_roxellana
ENSDARG00000079717	rbm12b	82	41.558	ENSSBOG00000027592	RBM12B	65	41.558	Saimiri_boliviensis_boliviensis
ENSDARG00000079717	rbm12b	70	42.346	ENSSHAG00000015335	RBM12B	67	42.346	Sarcophilus_harrisii
ENSDARG00000079717	rbm12b	69	32.996	ENSSFOG00015009427	zgc:153215	99	31.984	Scleropages_formosus
ENSDARG00000079717	rbm12b	100	49.430	ENSSFOG00015001584	rbm12b	100	49.290	Scleropages_formosus
ENSDARG00000079717	rbm12b	100	43.020	ENSSMAG00000019708	rbm12b	100	43.062	Scophthalmus_maximus
ENSDARG00000079717	rbm12b	100	45.125	ENSSDUG00000006856	rbm12b	100	44.972	Seriola_dumerili
ENSDARG00000079717	rbm12b	100	45.265	ENSSLDG00000016156	rbm12b	100	45.112	Seriola_lalandi_dorsalis
ENSDARG00000079717	rbm12b	69	53.750	ENSSLDG00000013581	zgc:153215	76	48.352	Seriola_lalandi_dorsalis
ENSDARG00000079717	rbm12b	71	39.072	ENSSARG00000011845	-	67	39.029	Sorex_araneus
ENSDARG00000079717	rbm12b	71	39.771	ENSSPUG00000016954	RBM12B	92	38.241	Sphenodon_punctatus
ENSDARG00000079717	rbm12b	99	45.690	ENSSPAG00000006774	rbm12b	99	45.546	Stegastes_partitus
ENSDARG00000079717	rbm12b	81	42.667	ENSSSCG00000006110	RBM12B	59	42.667	Sus_scrofa
ENSDARG00000079717	rbm12b	69	41.247	ENSTGUG00000011860	RBM12B	96	41.046	Taeniopygia_guttata
ENSDARG00000079717	rbm12b	100	41.917	ENSTRUG00000013738	rbm12b	100	41.954	Takifugu_rubripes
ENSDARG00000079717	rbm12b	71	39.729	ENSTBEG00000000449	RBM12B	64	38.641	Tupaia_belangeri
ENSDARG00000079717	rbm12b	81	41.558	ENSUAMG00000023639	RBM12B	65	41.558	Ursus_americanus
ENSDARG00000079717	rbm12b	81	41.558	ENSUMAG00000016008	RBM12B	63	41.558	Ursus_maritimus
ENSDARG00000079717	rbm12b	81	40.990	ENSVVUG00000002694	RBM12B	67	40.260	Vulpes_vulpes
ENSDARG00000079717	rbm12b	70	36.735	ENSXETG00000014696	rbm12b	68	35.714	Xenopus_tropicalis
ENSDARG00000079717	rbm12b	100	33.241	ENSXETG00000014694	rbm12b	100	35.234	Xenopus_tropicalis
ENSDARG00000079717	rbm12b	100	43.601	ENSXMAG00000014213	rbm12b	100	43.441	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component