EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000079725 (Gene tree)
Gene ID: 568043
Gene Symbol: dhx9
Alias: si:ch211-194i4.1|wu:fe02c10
Full Name: DEAH (Asp-Glu-Ala-His) box helicase 9
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 19349 bases
Position: chr2:35854242-35873590
Accession: ZDB-GENE-070912-171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000118509	dsrm	PF00035.26	9.3e-24	1	2
ENSDARP00000118509	dsrm	PF00035.26	9.3e-24	2	2
ENSDARP00000118509	DEAD	PF00270.29	3.2e-08	1	1
ENSDARP00000118509	HA2	PF04408.23	1.1e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000134918	-	4118	XM_009298644	ENSDARP00000118509	1271 (aa)	XP_009296919	B0S6Z1

Gene Model

Click here to download ENSDARG00000079725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000079725's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000079725	dhx9	59	34.559	ENSDARG00000040326	dhx29	58	33.988
ENSDARG00000079725	dhx9	55	39.823	ENSDARG00000103525	YTHDC2	52	41.509
ENSDARG00000079725	dhx9	59	35.006	ENSDARG00000057660	dhx57	55	47.847
ENSDARG00000079725	dhx9	59	37.703	ENSDARG00000101059	dhx36	77	37.203
ENSDARG00000079725	dhx9	60	33.953	ENSDARG00000077839	dhx30	62	34.159

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000079725	dhx9	97	76.061	ENSG00000135829	DHX9	92	78.867	Homo_sapiens
ENSDARG00000079725	dhx9	92	78.596	ENSAMEG00000002233	DHX9	92	78.778	Ailuropoda_melanoleuca
ENSDARG00000079725	dhx9	95	81.097	ENSACIG00000016431	dhx9	93	82.308	Amphilophus_citrinellus
ENSDARG00000079725	dhx9	83	81.073	ENSAOCG00000010719	dhx9	98	79.212	Amphiprion_ocellaris
ENSDARG00000079725	dhx9	92	82.378	ENSAPEG00000006339	dhx9	90	82.546	Amphiprion_percula
ENSDARG00000079725	dhx9	92	82.188	ENSATEG00000007101	dhx9	100	83.004	Anabas_testudineus
ENSDARG00000079725	dhx9	92	78.505	ENSACAG00000005023	DHX9	93	78.250	Anolis_carolinensis
ENSDARG00000079725	dhx9	96	75.512	ENSANAG00000030279	DHX9	92	79.001	Aotus_nancymaae
ENSDARG00000079725	dhx9	92	82.869	ENSACLG00000022296	dhx9	100	82.879	Astatotilapia_calliptera
ENSDARG00000079725	dhx9	92	78.014	ENSBTAG00000019821	DHX9	93	75.967	Bos_taurus
ENSDARG00000079725	dhx9	99	41.454	WBGene00004355	rha-1	91	42.763	Caenorhabditis_elegans
ENSDARG00000079725	dhx9	95	75.654	ENSCJAG00000004821	DHX9	91	81.733	Callithrix_jacchus
ENSDARG00000079725	dhx9	92	78.608	ENSCAFG00000013205	DHX9	92	78.523	Canis_familiaris
ENSDARG00000079725	dhx9	92	78.608	ENSCAFG00020014886	DHX9	92	78.523	Canis_lupus_dingo
ENSDARG00000079725	dhx9	92	75.871	ENSCHIG00000018643	DHX9	92	76.361	Capra_hircus
ENSDARG00000079725	dhx9	92	78.456	ENSTSYG00000007970	DHX9	100	77.787	Carlito_syrichta
ENSDARG00000079725	dhx9	86	70.480	ENSCAPG00000015604	DHX9	81	72.519	Cavia_aperea
ENSDARG00000079725	dhx9	99	73.550	ENSCPOG00000040669	DHX9	86	77.430	Cavia_porcellus
ENSDARG00000079725	dhx9	85	77.791	ENSCCAG00000022597	DHX9	91	77.804	Cebus_capucinus
ENSDARG00000079725	dhx9	92	79.099	ENSCATG00000027871	DHX9	99	79.523	Cercocebus_atys
ENSDARG00000079725	dhx9	92	78.154	ENSCLAG00000010684	DHX9	85	77.946	Chinchilla_lanigera
ENSDARG00000079725	dhx9	79	82.260	ENSCSAG00000012549	DHX9	90	82.260	Chlorocebus_sabaeus
ENSDARG00000079725	dhx9	91	70.639	ENSCHOG00000012736	DHX9	99	70.553	Choloepus_hoffmanni
ENSDARG00000079725	dhx9	97	78.496	ENSCPBG00000015757	DHX9	93	79.864	Chrysemys_picta_bellii
ENSDARG00000079725	dhx9	95	59.787	ENSCSAVG00000001493	-	100	60.980	Ciona_savignyi
ENSDARG00000079725	dhx9	97	76.141	ENSCANG00000032888	DHX9	92	78.819	Colobus_angolensis_palliatus
ENSDARG00000079725	dhx9	96	76.538	ENSCGRG00001015796	Dhx9	95	77.947	Cricetulus_griseus_chok1gshd
ENSDARG00000079725	dhx9	91	76.541	ENSCSEG00000017621	dhx9	100	76.455	Cynoglossus_semilaevis
ENSDARG00000079725	dhx9	89	82.862	ENSCVAG00000009479	dhx9	93	82.817	Cyprinodon_variegatus
ENSDARG00000079725	dhx9	94	78.290	ENSDNOG00000004038	DHX9	92	78.979	Dasypus_novemcinctus
ENSDARG00000079725	dhx9	94	51.188	FBgn0002774	mle	88	54.788	Drosophila_melanogaster
ENSDARG00000079725	dhx9	87	73.343	ENSETEG00000009729	DHX9	85	73.343	Echinops_telfairi
ENSDARG00000079725	dhx9	83	63.662	ENSEBUG00000015945	-	88	67.641	Eptatretus_burgeri
ENSDARG00000079725	dhx9	92	79.099	ENSECAG00000011933	DHX9	93	79.099	Equus_caballus
ENSDARG00000079725	dhx9	81	80.423	ENSEEUG00000004824	DHX9	81	80.423	Erinaceus_europaeus
ENSDARG00000079725	dhx9	96	81.301	ENSELUG00000010512	dhx9	93	82.323	Esox_lucius
ENSDARG00000079725	dhx9	94	77.833	ENSFCAG00000019306	DHX9	95	76.417	Felis_catus
ENSDARG00000079725	dhx9	96	71.638	ENSFALG00000002992	DHX9	94	74.847	Ficedula_albicollis
ENSDARG00000079725	dhx9	92	77.966	ENSFDAG00000011454	DHX9	100	74.194	Fukomys_damarensis
ENSDARG00000079725	dhx9	97	78.021	ENSGAGG00000024443	DHX9	96	79.088	Gopherus_agassizii
ENSDARG00000079725	dhx9	99	69.275	ENSGGOG00000040887	-	93	62.813	Gorilla_gorilla
ENSDARG00000079725	dhx9	97	76.061	ENSGGOG00000013533	DHX9	92	78.867	Gorilla_gorilla
ENSDARG00000079725	dhx9	92	82.700	ENSHBUG00000004129	dhx9	93	82.730	Haplochromis_burtoni
ENSDARG00000079725	dhx9	92	77.919	ENSHGLG00000005769	DHX9	86	77.834	Heterocephalus_glaber_female
ENSDARG00000079725	dhx9	92	77.919	ENSHGLG00100015628	DHX9	82	77.834	Heterocephalus_glaber_male
ENSDARG00000079725	dhx9	93	77.565	ENSHCOG00000012968	dhx9	93	77.506	Hippocampus_comes
ENSDARG00000079725	dhx9	92	83.887	ENSIPUG00000016675	dhx9	92	83.404	Ictalurus_punctatus
ENSDARG00000079725	dhx9	94	77.657	ENSSTOG00000016288	DHX9	88	78.287	Ictidomys_tridecemlineatus
ENSDARG00000079725	dhx9	92	78.014	ENSJJAG00000003249	Dhx9	89	76.179	Jaculus_jaculus
ENSDARG00000079725	dhx9	93	57.360	ENSLACG00000017767	DHX9	93	59.250	Latimeria_chalumnae
ENSDARG00000079725	dhx9	93	83.459	ENSLOCG00000002158	dhx9	93	83.713	Lepisosteus_oculatus
ENSDARG00000079725	dhx9	97	76.793	ENSLAFG00000022058	DHX9	94	78.796	Loxodonta_africana
ENSDARG00000079725	dhx9	92	79.014	ENSMFAG00000041152	DHX9	99	79.423	Macaca_fascicularis
ENSDARG00000079725	dhx9	92	79.014	ENSMMUG00000005635	DHX9	96	77.011	Macaca_mulatta
ENSDARG00000079725	dhx9	92	79.014	ENSMNEG00000041195	DHX9	96	77.011	Macaca_nemestrina
ENSDARG00000079725	dhx9	92	79.099	ENSMLEG00000039925	DHX9	100	77.436	Mandrillus_leucophaeus
ENSDARG00000079725	dhx9	92	83.731	ENSMAMG00000018644	dhx9	99	83.731	Mastacembelus_armatus
ENSDARG00000079725	dhx9	92	82.869	ENSMZEG00005014167	dhx9	93	82.898	Maylandia_zebra
ENSDARG00000079725	dhx9	96	77.687	ENSMICG00000008285	DHX9	95	79.541	Microcebus_murinus
ENSDARG00000079725	dhx9	89	77.613	ENSMMOG00000001268	dhx9	98	77.720	Mola_mola
ENSDARG00000079725	dhx9	95	77.348	ENSMODG00000006955	DHX9	93	79.609	Monodelphis_domestica
ENSDARG00000079725	dhx9	92	82.879	ENSMALG00000000318	dhx9	100	82.821	Monopterus_albus
ENSDARG00000079725	dhx9	92	78.098	MGP_CAROLIEiJ_G0014709	Dhx9	100	75.236	Mus_caroli
ENSDARG00000079725	dhx9	92	78.202	ENSMUSG00000042699	Dhx9	100	75.236	Mus_musculus
ENSDARG00000079725	dhx9	92	78.098	MGP_SPRETEiJ_G0015516	Dhx9	98	87.500	Mus_spretus
ENSDARG00000079725	dhx9	93	78.836	ENSMPUG00000011544	DHX9	97	78.778	Mustela_putorius_furo
ENSDARG00000079725	dhx9	92	77.759	ENSMLUG00000011163	DHX9	93	76.923	Myotis_lucifugus
ENSDARG00000079725	dhx9	92	78.929	ENSNLEG00000018013	DHX9	92	78.583	Nomascus_leucogenys
ENSDARG00000079725	dhx9	56	88.889	ENSMEUG00000001470	-	60	88.889	Notamacropus_eugenii
ENSDARG00000079725	dhx9	84	78.667	ENSOPRG00000016111	DHX9	93	78.667	Ochotona_princeps
ENSDARG00000079725	dhx9	92	77.026	ENSODEG00000012659	DHX9	87	76.320	Octodon_degus
ENSDARG00000079725	dhx9	92	82.898	ENSONIG00000000293	dhx9	92	82.814	Oreochromis_niloticus
ENSDARG00000079725	dhx9	93	78.475	ENSOCUG00000014651	DHX9	93	78.590	Oryctolagus_cuniculus
ENSDARG00000079725	dhx9	92	80.440	ENSORLG00000007454	dhx9	92	80.271	Oryzias_latipes
ENSDARG00000079725	dhx9	95	78.179	ENSORLG00020015369	dhx9	96	79.798	Oryzias_latipes_hni
ENSDARG00000079725	dhx9	96	79.170	ENSORLG00015000892	dhx9	92	79.832	Oryzias_latipes_hsok
ENSDARG00000079725	dhx9	92	81.525	ENSOMEG00000002437	dhx9	99	81.350	Oryzias_melastigma
ENSDARG00000079725	dhx9	92	78.947	ENSOGAG00000002620	DHX9	93	78.650	Otolemur_garnettii
ENSDARG00000079725	dhx9	92	77.655	ENSOARG00000019089	DHX9	93	75.967	Ovis_aries
ENSDARG00000079725	dhx9	97	76.061	ENSPPAG00000030190	DHX9	99	79.423	Pan_paniscus
ENSDARG00000079725	dhx9	93	78.765	ENSPPRG00000005890	DHX9	92	78.778	Panthera_pardus
ENSDARG00000079725	dhx9	93	78.765	ENSPTIG00000021059	DHX9	92	78.778	Panthera_tigris_altaica
ENSDARG00000079725	dhx9	97	76.061	ENSPTRG00000001759	DHX9	92	78.867	Pan_troglodytes
ENSDARG00000079725	dhx9	92	79.099	ENSPANG00000012826	DHX9	92	79.050	Papio_anubis
ENSDARG00000079725	dhx9	97	78.496	ENSPKIG00000006698	dhx9	93	80.494	Paramormyrops_kingsleyae
ENSDARG00000079725	dhx9	94	78.369	ENSPSIG00000006241	DHX9	92	79.609	Pelodiscus_sinensis
ENSDARG00000079725	dhx9	92	81.532	ENSPMGG00000009280	dhx9	93	81.218	Periophthalmus_magnuspinnatus
ENSDARG00000079725	dhx9	97	77.859	ENSPCIG00000003716	DHX9	98	79.372	Phascolarctos_cinereus
ENSDARG00000079725	dhx9	92	82.877	ENSPFOG00000019152	-	100	82.791	Poecilia_formosa
ENSDARG00000079725	dhx9	92	83.234	ENSPLAG00000001496	dhx9	96	83.234	Poecilia_latipinna
ENSDARG00000079725	dhx9	92	82.776	ENSPMEG00000019991	dhx9	99	82.776	Poecilia_mexicana
ENSDARG00000079725	dhx9	92	82.502	ENSPREG00000019307	dhx9	97	82.502	Poecilia_reticulata
ENSDARG00000079725	dhx9	95	75.981	ENSPPYG00000000431	DHX9	92	78.965	Pongo_abelii
ENSDARG00000079725	dhx9	86	82.031	ENSPCAG00000011042	DHX9	89	76.815	Procavia_capensis
ENSDARG00000079725	dhx9	93	79.001	ENSPCOG00000018029	DHX9	93	79.050	Propithecus_coquereli
ENSDARG00000079725	dhx9	92	78.117	ENSPVAG00000000836	DHX9	92	78.117	Pteropus_vampyrus
ENSDARG00000079725	dhx9	92	81.887	ENSPNYG00000008480	dhx9	93	81.688	Pundamilia_nyererei
ENSDARG00000079725	dhx9	93	83.279	ENSPNAG00000021343	dhx9	93	85.690	Pygocentrus_nattereri
ENSDARG00000079725	dhx9	93	77.655	ENSRNOG00000002735	Dhx9	99	78.032	Rattus_norvegicus
ENSDARG00000079725	dhx9	92	79.014	ENSRBIG00000041202	DHX9	92	78.867	Rhinopithecus_bieti
ENSDARG00000079725	dhx9	92	79.014	ENSRROG00000044740	DHX9	92	78.867	Rhinopithecus_roxellana
ENSDARG00000079725	dhx9	98	72.592	ENSSBOG00000026174	DHX9	92	75.953	Saimiri_boliviensis_boliviensis
ENSDARG00000079725	dhx9	92	79.524	ENSSHAG00000008540	DHX9	97	79.576	Sarcophilus_harrisii
ENSDARG00000079725	dhx9	92	80.475	ENSSFOG00015017378	dhx9	93	80.459	Scleropages_formosus
ENSDARG00000079725	dhx9	91	81.919	ENSSDUG00000017407	dhx9	100	81.834	Seriola_dumerili
ENSDARG00000079725	dhx9	91	81.606	ENSSLDG00000003926	dhx9	99	81.763	Seriola_lalandi_dorsalis
ENSDARG00000079725	dhx9	84	77.828	ENSSARG00000003931	DHX9	92	78.182	Sorex_araneus
ENSDARG00000079725	dhx9	92	79.117	ENSSPUG00000003934	DHX9	92	78.929	Sphenodon_punctatus
ENSDARG00000079725	dhx9	92	80.672	ENSSPAG00000009690	dhx9	91	81.008	Stegastes_partitus
ENSDARG00000079725	dhx9	68	72.101	ENSTGUG00000004038	-	100	71.821	Taeniopygia_guttata
ENSDARG00000079725	dhx9	70	77.354	ENSTBEG00000014052	DHX9	70	77.354	Tupaia_belangeri
ENSDARG00000079725	dhx9	91	76.612	ENSTTRG00000007665	DHX9	99	76.877	Tursiops_truncatus
ENSDARG00000079725	dhx9	92	78.511	ENSUAMG00000012201	DHX9	100	78.036	Ursus_americanus
ENSDARG00000079725	dhx9	92	78.511	ENSUMAG00000016482	DHX9	92	78.693	Ursus_maritimus
ENSDARG00000079725	dhx9	86	76.256	ENSVPAG00000008097	DHX9	86	76.164	Vicugna_pacos
ENSDARG00000079725	dhx9	92	78.608	ENSVVUG00000008915	DHX9	92	78.523	Vulpes_vulpes
ENSDARG00000079725	dhx9	97	76.202	ENSXETG00000012515	dhx9	93	79.001	Xenopus_tropicalis
ENSDARG00000079725	dhx9	92	82.894	ENSXMAG00000011305	dhx9	94	82.894	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004003	ATP-dependent DNA helicase activity	21873635.	IBA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0009615	response to virus	25972544.	IGI	Process
GO:0009615	response to virus	25972544.	IMP	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0034459	ATP-dependent 3'-5' RNA helicase activity	21873635.	IBA	Function
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0050684	regulation of mRNA processing	21873635.	IBA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component