EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000079947 (Gene tree)
Gene ID: 100151531
Gene Symbol: gfi1b
Alias: si:ch211-231o6.2
Full Name: growth factor independent 1B transcription repressor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 16481 bases
Position: chr21:17280309-17296789
Accession: ZDB-GENE-091118-129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000117376	zf-C2H2	PF00096.26	1.3e-27	1	6
ENSDARP00000117376	zf-C2H2	PF00096.26	1.3e-27	2	6
ENSDARP00000117376	zf-C2H2	PF00096.26	1.3e-27	3	6
ENSDARP00000117376	zf-C2H2	PF00096.26	1.3e-27	4	6
ENSDARP00000117376	zf-C2H2	PF00096.26	1.3e-27	5	6
ENSDARP00000117376	zf-C2H2	PF00096.26	1.3e-27	6	6
ENSDARP00000103094	zf-C2H2	PF00096.26	6.8e-25	1	5
ENSDARP00000103094	zf-C2H2	PF00096.26	6.8e-25	2	5
ENSDARP00000103094	zf-C2H2	PF00096.26	6.8e-25	3	5
ENSDARP00000103094	zf-C2H2	PF00096.26	6.8e-25	4	5
ENSDARP00000103094	zf-C2H2	PF00096.26	6.8e-25	5	5
ENSDARP00000145290	zf-C2H2	PF00096.26	6.8e-25	1	5
ENSDARP00000145290	zf-C2H2	PF00096.26	6.8e-25	2	5
ENSDARP00000145290	zf-C2H2	PF00096.26	6.8e-25	3	5
ENSDARP00000145290	zf-C2H2	PF00096.26	6.8e-25	4	5
ENSDARP00000145290	zf-C2H2	PF00096.26	6.8e-25	5	5
ENSDARP00000117376	zf-met	PF12874.7	4.8e-10	1	2
ENSDARP00000117376	zf-met	PF12874.7	4.8e-10	2	2
ENSDARP00000103094	zf-met	PF12874.7	4e-08	1	2
ENSDARP00000103094	zf-met	PF12874.7	4e-08	2	2
ENSDARP00000145290	zf-met	PF12874.7	4e-08	1	2
ENSDARP00000145290	zf-met	PF12874.7	4e-08	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000147993	-	754	-	ENSDARP00000117376	237 (aa)	-	F1QP37
ENSDART00000192180	-	1362	XM_005161133	ENSDARP00000145290	334 (aa)	XP_005161190	E7FBX7
ENSDART00000114877	-	1058	-	ENSDARP00000103094	334 (aa)	-	E7FBX7

Gene Model

Click here to download ENSDARG00000079947's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000079947's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000079947	gfi1b	72	86.550	ENSDARG00000020746	gfi1aa	100	49.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000079947	gfi1b	99	85.232	ENSAPOG00000001296	gfi1b	100	71.006	Acanthochromis_polyacanthus
ENSDARG00000079947	gfi1b	98	82.553	ENSACIG00000002190	gfi1b	100	63.095	Amphilophus_citrinellus
ENSDARG00000079947	gfi1b	99	84.810	ENSAOCG00000021187	gfi1b	100	70.501	Amphiprion_ocellaris
ENSDARG00000079947	gfi1b	99	84.810	ENSAPEG00000016196	gfi1b	100	71.302	Amphiprion_percula
ENSDARG00000079947	gfi1b	99	85.654	ENSATEG00000002534	gfi1b	100	70.588	Anabas_testudineus
ENSDARG00000079947	gfi1b	97	78.448	ENSAPLG00000003373	GFI1B	100	61.449	Anas_platyrhynchos
ENSDARG00000079947	gfi1b	99	82.278	ENSACLG00000027053	gfi1b	100	67.257	Astatotilapia_calliptera
ENSDARG00000079947	gfi1b	99	89.030	ENSAMXG00000037544	GFI1B	100	76.968	Astyanax_mexicanus
ENSDARG00000079947	gfi1b	99	74.262	ENSCAPG00000010404	GFI1B	100	61.128	Cavia_aperea
ENSDARG00000079947	gfi1b	97	78.448	ENSCPBG00000021186	GFI1B	100	60.511	Chrysemys_picta_bellii
ENSDARG00000079947	gfi1b	99	83.613	ENSCSEG00000001315	gfi1b	100	67.742	Cynoglossus_semilaevis
ENSDARG00000079947	gfi1b	99	84.810	ENSCVAG00000017168	gfi1b	100	66.766	Cyprinodon_variegatus
ENSDARG00000079947	gfi1b	97	53.043	ENSEEUG00000012609	-	96	53.043	Erinaceus_europaeus
ENSDARG00000079947	gfi1b	99	89.362	ENSELUG00000016933	gfi1b	100	74.927	Esox_lucius
ENSDARG00000079947	gfi1b	97	70.656	ENSFALG00000001479	GFI1B	100	56.873	Ficedula_albicollis
ENSDARG00000079947	gfi1b	99	84.388	ENSFHEG00000015138	gfi1b	100	68.012	Fundulus_heteroclitus
ENSDARG00000079947	gfi1b	99	82.353	ENSGMOG00000019123	gfi1b	89	82.427	Gadus_morhua
ENSDARG00000079947	gfi1b	97	78.112	ENSGALG00000003478	GFI1B	100	60.983	Gallus_gallus
ENSDARG00000079947	gfi1b	99	83.404	ENSGAFG00000003059	gfi1b	100	83.404	Gambusia_affinis
ENSDARG00000079947	gfi1b	99	82.353	ENSGACG00000018134	gfi1b	100	63.836	Gasterosteus_aculeatus
ENSDARG00000079947	gfi1b	97	78.879	ENSGAGG00000021327	GFI1B	100	62.791	Gopherus_agassizii
ENSDARG00000079947	gfi1b	99	82.278	ENSHBUG00000005451	gfi1b	100	67.257	Haplochromis_burtoni
ENSDARG00000079947	gfi1b	99	85.232	ENSHCOG00000013713	gfi1b	100	69.412	Hippocampus_comes
ENSDARG00000079947	gfi1b	99	86.920	ENSIPUG00000012769	gfi1b	100	75.731	Ictalurus_punctatus
ENSDARG00000079947	gfi1b	99	66.296	ENSJJAG00000016355	Gfi1b	100	55.759	Jaculus_jaculus
ENSDARG00000079947	gfi1b	99	85.232	ENSKMAG00000016047	gfi1b	100	68.035	Kryptolebias_marmoratus
ENSDARG00000079947	gfi1b	99	85.654	ENSLBEG00000020297	gfi1b	99	69.795	Labrus_bergylta
ENSDARG00000079947	gfi1b	99	75.620	ENSLACG00000012207	GFI1B	100	60.641	Latimeria_chalumnae
ENSDARG00000079947	gfi1b	99	86.250	ENSLOCG00000005750	gfi1b	100	68.876	Lepisosteus_oculatus
ENSDARG00000079947	gfi1b	96	75.325	ENSLAFG00000022367	GFI1B	100	60.174	Loxodonta_africana
ENSDARG00000079947	gfi1b	99	86.498	ENSMAMG00000003040	gfi1b	100	71.848	Mastacembelus_armatus
ENSDARG00000079947	gfi1b	99	82.627	ENSMZEG00005015594	gfi1b	99	67.456	Maylandia_zebra
ENSDARG00000079947	gfi1b	97	79.310	ENSMGAG00000006129	GFI1B	100	61.272	Meleagris_gallopavo
ENSDARG00000079947	gfi1b	97	85.345	ENSMMOG00000011764	gfi1b	100	69.795	Mola_mola
ENSDARG00000079947	gfi1b	99	67.407	ENSMODG00000012600	GFI1B	100	55.135	Monodelphis_domestica
ENSDARG00000079947	gfi1b	99	83.544	ENSMALG00000004034	gfi1b	100	69.591	Monopterus_albus
ENSDARG00000079947	gfi1b	99	75.745	ENSNGAG00000003333	Gfi1b	100	59.654	Nannospalax_galili
ENSDARG00000079947	gfi1b	57	67.164	ENSNBRG00000012376	-	99	67.164	Neolamprologus_brichardi
ENSDARG00000079947	gfi1b	99	82.353	ENSNBRG00000012391	gfi1b	100	67.647	Neolamprologus_brichardi
ENSDARG00000079947	gfi1b	99	82.353	ENSONIG00000013011	gfi1b	94	89.385	Oreochromis_niloticus
ENSDARG00000079947	gfi1b	97	78.017	ENSOANG00000014723	GFI1B	100	60.641	Ornithorhynchus_anatinus
ENSDARG00000079947	gfi1b	99	62.025	ENSORLG00000014390	GFI1B	96	58.054	Oryzias_latipes
ENSDARG00000079947	gfi1b	99	81.857	ENSORLG00020003719	GFI1B	100	65.143	Oryzias_latipes_hni
ENSDARG00000079947	gfi1b	99	81.857	ENSORLG00015017142	gfi1b	100	65.714	Oryzias_latipes_hsok
ENSDARG00000079947	gfi1b	99	81.435	ENSOMEG00000015149	GFI1B	100	65.385	Oryzias_melastigma
ENSDARG00000079947	gfi1b	99	75.630	ENSOGAG00000008879	GFI1B	100	60.116	Otolemur_garnettii
ENSDARG00000079947	gfi1b	99	86.076	ENSPKIG00000007643	gfi1b	100	72.647	Paramormyrops_kingsleyae
ENSDARG00000079947	gfi1b	97	79.741	ENSPSIG00000012112	GFI1B	100	61.299	Pelodiscus_sinensis
ENSDARG00000079947	gfi1b	99	79.752	ENSPMGG00000006021	gfi1b	99	64.035	Periophthalmus_magnuspinnatus
ENSDARG00000079947	gfi1b	97	66.038	ENSPCIG00000019724	GFI1B	100	53.619	Phascolarctos_cinereus
ENSDARG00000079947	gfi1b	99	84.388	ENSPFOG00000003460	gfi1b	100	69.477	Poecilia_formosa
ENSDARG00000079947	gfi1b	99	84.388	ENSPLAG00000017181	GFI1B	100	68.391	Poecilia_latipinna
ENSDARG00000079947	gfi1b	99	84.388	ENSPLAG00000021960	GFI1B	100	69.006	Poecilia_latipinna
ENSDARG00000079947	gfi1b	99	84.388	ENSPMEG00000019220	gfi1b	100	69.298	Poecilia_mexicana
ENSDARG00000079947	gfi1b	99	84.388	ENSPMEG00000001556	GFI1B	100	69.298	Poecilia_mexicana
ENSDARG00000079947	gfi1b	99	83.966	ENSPREG00000021718	gfi1b	100	69.006	Poecilia_reticulata
ENSDARG00000079947	gfi1b	99	82.278	ENSPNYG00000018422	gfi1b	100	66.372	Pundamilia_nyererei
ENSDARG00000079947	gfi1b	99	89.030	ENSPNAG00000021118	gfi1b	100	77.015	Pygocentrus_nattereri
ENSDARG00000079947	gfi1b	97	60.526	ENSSHAG00000006462	GFI1B	100	50.266	Sarcophilus_harrisii
ENSDARG00000079947	gfi1b	76	81.768	ENSSFOG00015011566	gfi1b	90	64.789	Scleropages_formosus
ENSDARG00000079947	gfi1b	99	85.593	ENSSMAG00000015181	gfi1b	98	70.674	Scophthalmus_maximus
ENSDARG00000079947	gfi1b	99	85.654	ENSSDUG00000011604	gfi1b	100	69.388	Seriola_dumerili
ENSDARG00000079947	gfi1b	99	86.076	ENSSLDG00000013823	gfi1b	100	70.231	Seriola_lalandi_dorsalis
ENSDARG00000079947	gfi1b	96	62.500	ENSSPUG00000016039	GFI1B	100	52.023	Sphenodon_punctatus
ENSDARG00000079947	gfi1b	99	86.498	ENSSPAG00000022914	gfi1b	100	73.077	Stegastes_partitus
ENSDARG00000079947	gfi1b	52	61.983	ENSTGUG00000015953	-	63	61.983	Taeniopygia_guttata
ENSDARG00000079947	gfi1b	70	95.614	ENSTGUG00000005282	-	99	95.614	Taeniopygia_guttata
ENSDARG00000079947	gfi1b	99	81.435	ENSTRUG00000004525	gfi1b	100	66.471	Takifugu_rubripes
ENSDARG00000079947	gfi1b	99	81.013	ENSTNIG00000003834	gfi1b	100	66.276	Tetraodon_nigroviridis
ENSDARG00000079947	gfi1b	99	52.743	ENSTBEG00000014459	GFI1B	100	44.957	Tupaia_belangeri
ENSDARG00000079947	gfi1b	96	72.727	ENSXETG00000006263	gfi1b	100	57.803	Xenopus_tropicalis
ENSDARG00000079947	gfi1b	99	84.810	ENSXMAG00000027589	gfi1b	100	70.175	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0030099	myeloid cell differentiation	23122293.	IMP	Process
GO:0030218	erythrocyte differentiation	22960038.	IMP	Process
GO:0031490	chromatin DNA binding	21873635.	IBA	Function
GO:0034972	histone H3-R26 methylation	21873635.	IBA	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0060216	definitive hemopoiesis	22960038.	IGI	Process
GO:0060216	definitive hemopoiesis	22960038.	IMP	Process